BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50720.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323632 jgi|Araly1|323632|fgenesh1_pm.C_scaffold_5001176 1480 0.0
> Ahg323632 jgi|Araly1|323632|fgenesh1_pm.C_scaffold_5001176
Length=1128
Score = 1480 bits (801), Expect = 0.0
Identities = 1028/1138 (90%), Gaps = 14/1138 (1%)
Strand=Plus/Plus
Query 1 ATGGCCATTTCTCCGACGATGATGCTTAATGCGAACTACCCTTTTTTCATGTCAGCGTTT 60
||||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 ATGGCCATTGCCCCGACGATGATGCTTTATCCGAACTACCCTTTTTTCATGTCAGCGTTT 60
Query 61 GGCTCAGATGACAATAATGATGAGTCTGATAACCAGTTCGATTTCAATATCAGCAGAGAG 120
|||||||||||| |||||| |||| | |||| ||||||||||||||||||| ||||
Sbjct 61 GGCTCAGATGAC---AATGAT---TCTGGTGACCATTTCGATTTCAATATCAGCAAAGAG 114
Query 121 TTGCTTCTCAACCCTAAAGACATCATGAGGGGAGAGATGATTGGAGAAGGAGGCAACTCC 180
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 115 TTGCTTCTCAACCCTAAAAACATCATGCTGGGAGAGATGATTGGAGAAGGAGGCAACTCC 174
Query 181 ATCGTTTACAAAGGCCGACTCAAAAACATTGTTCCTGTGGCGGTGAAGATAGTGCAGCCG 240
||||| |||||||||| | ||||| || | | |||||||||||||||||||||||||||
Sbjct 175 ATCGTCTACAAAGGCCTATTCAAAGGCACTATGCCTGTGGCGGTGAAGATAGTGCAGCCG 234
Query 241 GGTAAAACATCTGCTGTAAGCATTCAGGACAAACAACAGTTTCAAAAGGAGGTTCTGGTA 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 235 AGTAAAACATCTGCTGTAAGCATTCAACACAAACAACAGTTTCAAAAGGAGGTTCTGCTA 294
Query 301 CTATCCTCGATGAAACATGAAAACATTGTCAGGTTTGTTGGAGCTTGCATAGAGCCACAA 360
|||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 295 CTATCCTCGATGAAACATCTCAACATTGTGAGGTTTCTTGGAGCTTGCATAGAGCCACAA 354
Query 361 TTGATGATAGTTACCGAACTCGTAAGAGGTGGTACTCTTCAGAGGTTCATGTTGAACTCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTGATGATAGTTACCGAACTCGTAAGAGGTGGTACTCTTCAGAGGTTCATGTTGAACTCT 414
Query 421 CGCCCGAGTCCTCTTGATCTCAAGGTGTCACTAAGCTTTGCTTTGGACATTTCTCGAGCC 480
|| ||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 415 CGTCCGAGTCCTCTAGATCTAAAGACGTCACTAACCTTTGCTTTGGACATTTCTCGAGCC 474
Query 481 ATGGAGTATTTGCACTCAAAAGGCATCATTCACCGTGACCTAAATCCAAGGAATGTTTTG 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATGGAGTTTTTGCACTCAAAAGGCATCATTCACCGTGACCTAAATCCAAGGAATGTTTTG 534
Query 541 GTAACTGGTGATATGAAACATGTGAAGTTGGCTGATTTTGGACTTGCAAGAGAAAAGACT 600
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GTAACTGGTGATATGCATCATGTGAAGTTGGCTGATTTTGGACTTGCAAGAGAAAAGACT 594
Query 601 CTTGGTGGCATGACTTGTGAGGCGGGCACGTACCGTTGGATGGCTCCAGAGGTATGCAGC 660
| ||||||||||||||||||||||| || || || ||||||||||| ||||||||||||
Sbjct 595 GTAGGTGGCATGACTTGTGAGGCGGGAACATATCGATGGATGGCTCCTGAGGTATGCAGC 654
Query 661 CGTGAGCCACTCCGAATTGGGGAGAAAAAACACTACGACCAGAAAATCGATGTGTATAGC 720
||||||||||||| ||||||||||||||||||||||||||| || || || || ||||||
Sbjct 655 CGTGAGCCACTCCTAATTGGGGAGAAAAAACACTACGACCACAAGATAGACGTTTATAGC 714
Query 721 TTCGCACTGATTTTCTGGTCCTTGCTCACAAACAAAACACCTTTC-AGTGAGATACCTAG 779
|||||| ||||||||||||| |||||||| ||| | ||||| ||| | || ||| | |
Sbjct 715 TTCGCATTGATTTTCTGGTCGTTGCTCACTAACCAGACACCATTCTA-TGGGATGGATGG 773
Query 780 CATTTCTATTCCCTATTTTGTGAACCAGGGCAAGAGACCAAGCCTA-TCGAATATTCCTG 838
||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 774 TATTTCTATTCCCTATTTTGTGAACCAGGGCATGAGACCAAGCCTAATT-AATATTCCTG 832
Query 839 ATGAGGTCGTCCCCATATTAGAAT-GTTGTTGGGCAGCGGACTCAAAGACTCGTCTCGAA 897
|||||||||| || || || |||| || | ||||| | |||||||||| |||||| |||
Sbjct 833 ATGAGGTCGTACCAATTTTGGAATCGT-GCTGGGCCGAAGACTCAAAGAATCGTCTTGAA 891
Query 898 TTCAAAGATATTACAATCTCACT-GGAAAGCTTGCTAAAAAGATTCTGCTCAGAGAGAAG 956
|||||||| ||||| |||| || ||||||||||||||||||| ||||| ||||||| ||
Sbjct 892 TTCAAAGAGATTACTATCTT-CTTGGAAAGCTTGCTAAAAAGACTCTGCCCAGAGAGTAG 950
Query 957 TAATAATGAGATAACGATCACCGAAGATGAAGCTTATGATGATGAGATAGAGGAATTGGA 1016
|||| |||| |||||| | || || ||||| |||||||||||||||||||||||||||||
Sbjct 951 TAATGATGATATAACGGTAACAGACGATGAGGCTTATGATGATGAGATAGAGGAATTGGA 1010
Query 1017 GACCACTTGGCTGCTTCCAAAGCGCTATATCAAGCTGAAGAAACCTAAGAAGATCAAGCA 1076
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 1011 GACCACTTGGCTGCTTGGAAAGCGCTATATCAAGCTGAACAAACCTAAGAAGAAGAAGGA 1070
Query 1077 GAACGTGATGAAGAAGATACTTCCTTTCTTCAAGAAGTTCATTTCTTCAAAGTGGTGA 1134
||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1071 GAAAGTGATGAAGAGGATACTTCCTTTCTTCAAGAAGTTCTTTTCTTCAAAGTGGTGA 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5