BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50720.1 Length=1134 Score E Sequences producing significant alignments: (Bits) Value Ahg323632 jgi|Araly1|323632|fgenesh1_pm.C_scaffold_5001176 1480 0.0 > Ahg323632 jgi|Araly1|323632|fgenesh1_pm.C_scaffold_5001176 Length=1128 Score = 1480 bits (801), Expect = 0.0 Identities = 1028/1138 (90%), Gaps = 14/1138 (1%) Strand=Plus/Plus Query 1 ATGGCCATTTCTCCGACGATGATGCTTAATGCGAACTACCCTTTTTTCATGTCAGCGTTT 60 ||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1 ATGGCCATTGCCCCGACGATGATGCTTTATCCGAACTACCCTTTTTTCATGTCAGCGTTT 60 Query 61 GGCTCAGATGACAATAATGATGAGTCTGATAACCAGTTCGATTTCAATATCAGCAGAGAG 120 |||||||||||| |||||| |||| | |||| ||||||||||||||||||| |||| Sbjct 61 GGCTCAGATGAC---AATGAT---TCTGGTGACCATTTCGATTTCAATATCAGCAAAGAG 114 Query 121 TTGCTTCTCAACCCTAAAGACATCATGAGGGGAGAGATGATTGGAGAAGGAGGCAACTCC 180 |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 115 TTGCTTCTCAACCCTAAAAACATCATGCTGGGAGAGATGATTGGAGAAGGAGGCAACTCC 174 Query 181 ATCGTTTACAAAGGCCGACTCAAAAACATTGTTCCTGTGGCGGTGAAGATAGTGCAGCCG 240 ||||| |||||||||| | ||||| || | | ||||||||||||||||||||||||||| Sbjct 175 ATCGTCTACAAAGGCCTATTCAAAGGCACTATGCCTGTGGCGGTGAAGATAGTGCAGCCG 234 Query 241 GGTAAAACATCTGCTGTAAGCATTCAGGACAAACAACAGTTTCAAAAGGAGGTTCTGGTA 300 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 235 AGTAAAACATCTGCTGTAAGCATTCAACACAAACAACAGTTTCAAAAGGAGGTTCTGCTA 294 Query 301 CTATCCTCGATGAAACATGAAAACATTGTCAGGTTTGTTGGAGCTTGCATAGAGCCACAA 360 |||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| Sbjct 295 CTATCCTCGATGAAACATCTCAACATTGTGAGGTTTCTTGGAGCTTGCATAGAGCCACAA 354 Query 361 TTGATGATAGTTACCGAACTCGTAAGAGGTGGTACTCTTCAGAGGTTCATGTTGAACTCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 TTGATGATAGTTACCGAACTCGTAAGAGGTGGTACTCTTCAGAGGTTCATGTTGAACTCT 414 Query 421 CGCCCGAGTCCTCTTGATCTCAAGGTGTCACTAAGCTTTGCTTTGGACATTTCTCGAGCC 480 || ||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| Sbjct 415 CGTCCGAGTCCTCTAGATCTAAAGACGTCACTAACCTTTGCTTTGGACATTTCTCGAGCC 474 Query 481 ATGGAGTATTTGCACTCAAAAGGCATCATTCACCGTGACCTAAATCCAAGGAATGTTTTG 540 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 ATGGAGTTTTTGCACTCAAAAGGCATCATTCACCGTGACCTAAATCCAAGGAATGTTTTG 534 Query 541 GTAACTGGTGATATGAAACATGTGAAGTTGGCTGATTTTGGACTTGCAAGAGAAAAGACT 600 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 535 GTAACTGGTGATATGCATCATGTGAAGTTGGCTGATTTTGGACTTGCAAGAGAAAAGACT 594 Query 601 CTTGGTGGCATGACTTGTGAGGCGGGCACGTACCGTTGGATGGCTCCAGAGGTATGCAGC 660 | ||||||||||||||||||||||| || || || ||||||||||| |||||||||||| Sbjct 595 GTAGGTGGCATGACTTGTGAGGCGGGAACATATCGATGGATGGCTCCTGAGGTATGCAGC 654 Query 661 CGTGAGCCACTCCGAATTGGGGAGAAAAAACACTACGACCAGAAAATCGATGTGTATAGC 720 ||||||||||||| ||||||||||||||||||||||||||| || || || || |||||| Sbjct 655 CGTGAGCCACTCCTAATTGGGGAGAAAAAACACTACGACCACAAGATAGACGTTTATAGC 714 Query 721 TTCGCACTGATTTTCTGGTCCTTGCTCACAAACAAAACACCTTTC-AGTGAGATACCTAG 779 |||||| ||||||||||||| |||||||| ||| | ||||| ||| | || ||| | | Sbjct 715 TTCGCATTGATTTTCTGGTCGTTGCTCACTAACCAGACACCATTCTA-TGGGATGGATGG 773 Query 780 CATTTCTATTCCCTATTTTGTGAACCAGGGCAAGAGACCAAGCCTA-TCGAATATTCCTG 838 ||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| Sbjct 774 TATTTCTATTCCCTATTTTGTGAACCAGGGCATGAGACCAAGCCTAATT-AATATTCCTG 832 Query 839 ATGAGGTCGTCCCCATATTAGAAT-GTTGTTGGGCAGCGGACTCAAAGACTCGTCTCGAA 897 |||||||||| || || || |||| || | ||||| | |||||||||| |||||| ||| Sbjct 833 ATGAGGTCGTACCAATTTTGGAATCGT-GCTGGGCCGAAGACTCAAAGAATCGTCTTGAA 891 Query 898 TTCAAAGATATTACAATCTCACT-GGAAAGCTTGCTAAAAAGATTCTGCTCAGAGAGAAG 956 |||||||| ||||| |||| || ||||||||||||||||||| ||||| ||||||| || Sbjct 892 TTCAAAGAGATTACTATCTT-CTTGGAAAGCTTGCTAAAAAGACTCTGCCCAGAGAGTAG 950 Query 957 TAATAATGAGATAACGATCACCGAAGATGAAGCTTATGATGATGAGATAGAGGAATTGGA 1016 |||| |||| |||||| | || || ||||| ||||||||||||||||||||||||||||| Sbjct 951 TAATGATGATATAACGGTAACAGACGATGAGGCTTATGATGATGAGATAGAGGAATTGGA 1010 Query 1017 GACCACTTGGCTGCTTCCAAAGCGCTATATCAAGCTGAAGAAACCTAAGAAGATCAAGCA 1076 |||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| | Sbjct 1011 GACCACTTGGCTGCTTGGAAAGCGCTATATCAAGCTGAACAAACCTAAGAAGAAGAAGGA 1070 Query 1077 GAACGTGATGAAGAAGATACTTCCTTTCTTCAAGAAGTTCATTTCTTCAAAGTGGTGA 1134 ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1071 GAAAGTGATGAAGAGGATACTTCCTTTCTTCAAGAAGTTCTTTTCTTCAAAGTGGTGA 1128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42278314953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5