BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50730.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348178 jgi|Araly1|348178|fgenesh1_pg.C_scaffold_5001570 1371 0.0
> Ahg348178 jgi|Araly1|348178|fgenesh1_pg.C_scaffold_5001570
Length=1110
Score = 1371 bits (742), Expect = 0.0
Identities = 992/1110 (89%), Gaps = 28/1110 (3%)
Strand=Plus/Plus
Query 8 CTCGAATGATTTTCAGAAACTATCCTTCTCACAATGAGTCCGACGACGAGCCATTCCATT 67
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 8 CTCGAATGATTTTCAGAAACTATCCTTCTTACAATGAGTCCGACGTCGAGCCATTCGATT 67
Query 68 TCAGTATCAGCAGAGAATTGCTTCT-CGACCGAAACGATGTCGTAGTGGGAGAGATGATT 126
|||||||||||| |||||||||||| | |||||| ||||||| |||||||||||||||||
Sbjct 68 TCAGTATCAGCAAAGAATTGCTTCTAC-ACCGAAGCGATGTCCTAGTGGGAGAGATGATT 126
Query 127 GGAGAAGGAGCTTACTCCATCGTCTACAAAGGATTGCTAAGAAACCAATTTCCCGTGGCG 186
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 127 GGAGAAGGAGCCTACTCCATCGTCTACAAAGGATTGCTAAGAAACCGATTTCCCGTGGCG 186
Query 187 GTGAAGATCATGGATCCGAGTACAACTTCCGCTGTAACCAAAGCGCACaaaaaaaCGTTT 246
|||||||| ||||| |||||| || ||| |||||| |||||||| | |||||| ||||
Sbjct 187 GTGAAGATAATGGAGCCGAGT--AA-TTCTTCTGTAAACAAAGCGCGCGAAAAAATGTTT 243
Query 247 CAAAAGGAAGTTCTGTTACTATCCAAGATGAAACATGACAACATTGTGAAGTTTGTTGGA 306
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 CAAAAGGAAGTTCTATTACTATCCAAGATGAAACATGACAACATCGTGAAGTTTGTTGGA 303
Query 307 GCTTGCATAGAACCACAATTGATTATAGTTACCGAACTCGTTGAAGGCGGCACTCTACAG 366
||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 304 GCTTGCATAGAGCCAGAATTGATGATAGTGACCGAACTCGTTGAAGGCGGCACTCTTCAG 363
Query 367 AGGTTCATG-C--ACTCTCGTCCGGG-TCCTCTTGACCTAAAGATGTCACTAAGCTTTGC 422
||||||||| | |||||||| |||| ||||||||| ||||| ||| |||||||||||||
Sbjct 364 AGGTTCATGACAAACTCTCGT-CGGGATCCTCTTGATCTAAACATGGCACTAAGCTTTGC 422
Query 423 TTTGGATATTTCACGAGCCATGGAGTTTGTGCACTCAAATGGCATCATTCACCGTGATTT 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TTTGGATATTTCTCGAGCCATGGAGTTTGTGCACTCAAATGGCATCATTCACCGTGATTT 482
Query 483 AAATCCAAGGAATTTGTTGGTAACCGGTGATCTGAAACATGTGAAATTGGCTGACTTTGG 542
||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 483 AAATCCAAGGAATTTGTTGGTGACCGGTGATCTGAAACATGTAAAACTGGCTGACTTTGG 542
Query 543 AATTGCAAGAGAAGAAACTAGAGGTGGCATGACCTGTGAGGCTGGCACCTCTAAATGGAT 602
|||||||||||| || ||||||||||||||||||| |||| ||| || | || |||||
Sbjct 543 AATTGCAAGAGAGGAGACTAGAGGTGGCATGACCTCCGAGGTTGGGACGTATAGGTGGAT 602
Query 603 GGCTCCTGAGGTAGTGTATAGCCCTGAGCCGCTGAGAGTTGGGGAGAAGAAGGAATATGA 662
||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 603 GGCTCCTGAGGTA-TGTA--GCCGTGAGCCGCTGAGAGTTGGGGAGAAGAAGGAATATGA 659
Query 663 CCATAAGGCTGATATTTACAGCTTTGCCATAGTATTATGGCAGCTGGTTACGAACGAAGA 722
||||||||| || | |||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 660 CCATAAGGCGGACGTATACAGCTTTGCCATAGTATTATGGGAGCTGGTTACAAACAAAGA 719
Query 723 ACCATTCCCT-GACGTGCCTAATAGCCTCTTTGTTCCCTATCTTGTTAGCCAAGGT---- 777
||||||| || | |||| || ||||||| |||||||||||||||||||| |||||
Sbjct 720 ACCATTCGCTAG-CGTGATTAGTAGCCTCGTTGTTCCCTATCTTGTTAGC-AAGGTGGGT 777
Query 778 CGGAGACCAA-TACTT-ACGAAGACTCCCGACGTGTTTGTCCCAATCGTTGAATCATGTT 835
||||| |||| | || | ||| | ||| || | | |||| || ||| ||| ||| ||||
Sbjct 778 CGGAGGCCAAGT-CTGGA-GAATATTCCGGATGAGATTGTGCCTATCATTGGATCTTGTT 835
Query 836 GGGCACAAGACCCGGATGCGCGTCCGGAATTTAAAGAGATTTCGGTTATGCTGACAAACT 895
|||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 836 GGGCACAAGACCCGGATGCGCGTCCGGAGTTTAAAGAGATTTCGGTTTTACTGACAAACT 895
Query 896 TGCTAAGAAGAATGAGCTCAGACAGTAGCATTGGCACAACACTACCGGATGGGGAAGC-T 954
|||||||||| |||||||| ||||||| |||| ||||||||||||||||| ||| || |
Sbjct 896 TGCTAAGAAGTCTGAGCTCAAACAGTAGTATTGACACAACACTACCGGATGAGGA-GCCT 954
Query 955 TATGAAGGTGAGATGGAGGAATCAGAGAACTC-TCCTCTTCTTCAAGAGCATTTTTGCAA 1013
||||| | |||||||||||| || |||| | | |||||| ||||||||| | ||||||
Sbjct 955 TATGACGATGAGATGGAGGATTCGGAGACC-CGTCCTCTGCTTCAAGAGTACCGTTGCAA 1013
Query 1014 GGTGAAGAAACCTAAGGagaagaagaagaagaagaaACTGGTGAAGATGAGATTTCCTTT 1073
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1014 GGTGAAGAAACCTAAGGAGAAGAAGAAGAAGAAGAAAGTGATGAAGATGAGACTTCCTTT 1073
Query 1074 CTTTAAGAAGTTCAAGGTTTGGTTGTACAA 1103
|| |||||||||||||| ||||||||||||
Sbjct 1074 CTCTAAGAAGTTCAAGGCTTGGTTGTACAA 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5