BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50740.1
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485420 jgi|Araly1|485420|fgenesh2_kg.5__1412__AT3G50740.1 2364 0.0
> Ahg485420 jgi|Araly1|485420|fgenesh2_kg.5__1412__AT3G50740.1
Length=1608
Score = 2364 bits (1280), Expect = 0.0
Identities = 1505/1615 (93%), Gaps = 9/1615 (1%)
Strand=Plus/Plus
Query 21 acaacaacaacaaaaaaaaaaaaaaaaaaGGCCAACGTTCAGT-GATCTAGGCTATGAAG 79
||||||||||| || || ||||| ||||| | |||| |||| | |||||||||||||||
Sbjct 1 ACAACAACAAC-AACAACAAAAACAAAAA-GACAACATTCA-TCTATCTAGGCTATGAAG 57
Query 80 ATTACAAAACCACATGTGGCCATGTTCGCTAGCCCCGGAATGGGCCACATCATCCCGGTG 139
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 58 ATTACAAAACCACATGCCGCCATGTTCGCTAGCCCCGGAATGGGCCACATCATTCCGGTG 117
Query 140 ATCGAGCTCGGAAAACGCTTAGCTGGTTCCCACGGCTTCGATGTCACCATTTTCGTCCTT 199
|||||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||
Sbjct 118 ATCGAGCTCGGAAAACGCTTAGCTGGATCTCACGGCTTCCACGTCACCATTTTCGTCCTT 177
Query 200 GAAACCGACGCAGCCTCAGCTCAATCTCAATTCCTTAACTCACCAGGCTGCGACGCGGCC 259
|||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 178 GAAACCGACGCAGCTTCCGCTCAATCTCAGTTCCTAAACTCACCAGGCTGCGACGCGGCC 237
Query 260 CTTGTTGATATCGTTGGCCTCCCAACGCCCGATATCTCCGGTTTAGTCGACCCATCAGCC 319
||||||||| | |||||||||||||| || |||||| ||||||||||||| |||||||||
Sbjct 238 CTTGTTGATGTTGTTGGCCTCCCAACTCCGGATATCACCGGTTTAGTCGATCCATCAGCC 297
Query 320 TTTTTTGGGATCAAGCTCTTGGTCATGATGCGTGAGACCATTCCTACCATCCGGTCAAAG 379
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 298 TTTTTTGGGATCAAGCTCTTGGTCATGATGCGTGAGACCATTCCTACCCTTCGATCAAAG 357
Query 380 ATAGAGGAGATGCAACACAAACCAACGGCTCTGATCGTAGACTTGTTTGGTTTGGACGCG 439
|| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 358 ATCGCTGAGATGCAACACAAACCAACGGCTTTGATCGTAGACTTGTTTGGTTTGGACGCG 417
Query 440 ATACCGCTCGGTGGTGAGTTCAACATGTTGACTTATATCTTCATCGCTTCAAACGCACGT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATACCGCTCGGTGGTGAGTTCAACATGTTGACTTATATCTTCATCGCTTCAAACGCACGT 477
Query 500 TTTCTCGCGGTGGCTTTGTTTTTCCCAACGTTGGACAAAGACATGGAAGAAGAGCACATA 559
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTTCTCGCGGTGGCTTTGTATTTCCCAACGTTGGACAAAGACATGGAAGAAGAGCACACG 537
Query 560 ATCAAGAAGCAACCTATGGTTATGCCTGGATGTGAACCGGTTCGGTTTGAAGATACACTT 619
||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 ATCAAGAAGAAACCTATGATTATGCCTGGATGTGAACCGGTTCGGTTTGAGGATACACTT 597
Query 620 GAAACATTCCTTGACCCAAACAGCCAACTCTACCGGGAATTTGTTCCTTTCGGTTCGGTT 679
||||||||||||||||| |||||||| || |||| ||||||||||||||||||||| |||
Sbjct 598 GAAACATTCCTTGACCCGAACAGCCAGCTGTACCAGGAATTTGTTCCTTTCGGTTCAGTT 657
Query 680 TTCCCAACGTG-TGATGGTATTATTGTGAATACATGGGATGATATGGAGCCCAAAACTTT 738
||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 658 TTCCCAACG-GCTGATGGTATTATTGTGAATACTTGGGATGATATGGAGCCCAAAACTTT 716
Query 739 GAAATCTCTTCAAGACCCAAAGCTCTTGGGTCGAATTGCTGGTGTACCGGTTTATCCAAT 798
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 717 GAAATCTCTTCAAGACCCAAAGCTCTTGGGTCGGATTGCTGGTGTACCGGTCTATCCAAT 776
Query 799 TGGTCCTTTGTCTAGACCGGTTGATCCATCTAAAACTAATCATCCGGTTTTGGATTGGTT 858
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGGTCCTTTGTCCAGACCGGTTGATCCATCTAAAACTAATCATCCGGTTTTGGATTGGTT 836
Query 859 AAACAAACAGCCGGACGAGTCGGTACTTTACATTTCATTTGGAAGCGGTGGCTCTCTCTC 918
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 837 AAACAAACAACCGGACGAGTCGGTACTTTACATTTCATTTGGAAGCGGCGGTTCTCTCTC 896
Query 919 GGCTAAACAACTAACCGAATTGGCTTGGGGACTTGAGATGAGTCAGCAACGGTTCGTTTG 978
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 GGCTAAACAGTTAACCGAATTGGCTTGGGGGCTTGAGATGAGTCAGCAACGGTTCGTTTG 956
Query 979 GGTGGTTCGACCCCCGGTGGACGGTTCAGCTTGCAGTGCATATTTATCCGCTAACAGTGG 1038
|||||| ||||| || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 GGTGGTCCGACCGCCAGTTGACGGTTCAGCTTGCAGTGCATATTTCTCCGCTAACAGTGG 1016
Query 1039 TAAAATACGAGACGGTACACCTGATTATCTCCCGGAAGGTTTTGTTAGCCGGACTCATGA 1098
| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 1017 TGAAATACGAGACGGTACACCGGATTATCTACCGGAAGGTTTCGTTAGCCGGACTCATGA 1076
Query 1099 GAGAGGCTTTATGGTCTCTTCTTGGGCTCCCCAAGCGGAGATCTTGGCCCACCAAGCCGT 1158
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1077 GAGAGGCTTCGTGGTCTCTTCTTGGGCTCCCCAAGCAGAGATCTTGGCCCACCAAGCCGT 1136
Query 1159 AGGTGGGTTTCTAACTCACTGCGGTTGGAATTCGATTCTCGAGAGCGTCGTTGGTGGCGT 1218
||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1137 TGGTGGGTTTCTGACTCACTGCGGTTGGAATTCGATCCTCGAGAGCGTCGTTAGTGGCGT 1196
Query 1219 TCCGATGATCGCGTGGCCACTTTTTGCGGAGCAGATGATGAACGCGACACTCCTCAACGA 1278
||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||| |||||||
Sbjct 1197 TCCGATGATTGCGTGGCCGCTTTTCGCGGATCAGATGATGAACGCGACTCTCATCAACGA 1256
Query 1279 AGAGCTTGGCGTTGCCGTCCGCTCTAAGAAACTACCGTCGGAGGGAGTGATTACGAGGGC 1338
|||||||||| |||| ||||| ||||| ||||| ||||| |||||||||||| |||||
Sbjct 1257 AGAGCTTGGCATTGCTGTCCGATCTAAAAAACTTCCGTCCGAGGGAGTGATTTGGAGGGA 1316
Query 1339 GGAGATCGAGGCGTTGGTGAGAAAGATCATGGTGGAGGAGGAAGGTGCTGAGATGAGAAA 1398
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1317 AGAGATCGAGGCGTTGGTTAGAAAGATCATGGTGGAGGAGGAAGGTGTTGAGATGAGAAA 1376
Query 1399 GAAGATAAAGAAGCTGAAAGAGACCGCTGCCGAATCGCTGAGTTGCGACGGTGGAGTGGC 1458
|||| |||||||||||||||| || || || || ||||||||||||||||||||||| ||
Sbjct 1377 GAAGGTAAAGAAGCTGAAAGACACGGCGGCGGAGTCGCTGAGTTGCGACGGTGGAGTAGC 1436
Query 1459 GCATGAATCGTTGTCAAGAATCGCCGACGAGAGCGAGCATCTTTTGGAGCGTGTCAGGTG 1518
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1437 GCACGAATCGTTGTCAAGAATCGCCGACGAGAGCAAGCATCTTTTGGAGCGTGTCAGGTG 1496
Query 1519 CATGGCACGTGGTGCCTAGGAACGCTTACCGTTTATAGTATGTTACTTATAAACTGCGTG 1578
||||||||||||||||||||||| ||||||||| | ||||| ||||| ||||||||||||
Sbjct 1497 CATGGCACGTGGTGCCTAGGAACACTTACCGTTAAAAGTATTTTACTAATAAACTGCGTG 1556
Query 1579 TCGTTTTACCCTTTTGGGTATCTTGTATTATATAGTTTCCGAGTCTTGGTTGCCA 1633
||||||||||||||| | |||||||||||||| |||||||||||||| ||||||
Sbjct 1557 TCGTTTTACCCTTTTCG-TATCTTGTATTATA--GTTTCCGAGTCTTGCTTGCCA 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64677236010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5