BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50750.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485421 jgi|Araly1|485421|fgenesh2_kg.5__1413__AT3G50750.1 1434 0.0
> Ahg485421 jgi|Araly1|485421|fgenesh2_kg.5__1413__AT3G50750.1
Length=1200
Score = 1434 bits (776), Expect = 0.0
Identities = 1036/1154 (90%), Gaps = 47/1154 (4%)
Strand=Plus/Plus
Query 1 CATATAAATACGAAACTTT-CTCTATTAAAATTATTTAACTTTTGCCTCTCTTTTCTCCT 59
||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 CATATAAATACGAAA-TTTCCTCCATTAAAATTATTTAACTTTTGCCTCTTTTTTCTCCT 59
Query 60 CGTGAAGGAAAATTCTTTAGTCATTTTTTCTCTCCTCGAGAATTACGcaaacacaacaaa 119
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 60 CTTGAAGGAAAATTCTTTAGTC-TTTTTTCTCTCCTCGAGAATTACGCAAACACAAAAAA 118
Query 120 -aacccagacattgaaaag-taaaaaacaaaaacagaga--aaGTGGGA-GATAG-AAGA 173
||| || | | ||||||| ||||||| ||||||||||| || || | ||| | | |
Sbjct 119 TAACTCA-AAACTGAAAAGTTAAAAAA-AAAAACAGAGAGGGAGAGGAATGATGGCATCA 176
Query 174 TGACGGCATCAGGAGGAGGATCAACGGCGGCGACGGGGAGGATGCCGACGTGgaaggaaa 233
|| || | || |||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 177 GGA-GG-AGGAGAAGGAGGATCAACGGCGGCGACGGGGAGGATGCCGACGTGGAAAGAGA 234
Query 234 gagagaacaacaagaa-gagagaaagaagaagaagagCAATAGCAGCTAAAATCTTCACC 292
||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 235 GAGAGAACAACAA-AAGGAGAGAAAGAAGAAGAAGAGCAATAGCAGCTAAAATATTCACC 293
Query 293 GGACTTAGATCTCAAGGCAATTATAAACTTCCTAAACACTGTGACAACAATGAAGTCCTC 352
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 294 GGACTTAGATCTCAGGGCAATTATAAACTCCCTAAACACTGTGACAACAATGAAGTCCTT 353
Query 353 AAAGCTCTTTGTCTTGAAGCTGGTTGGATCGTTCATGAAGATGGCACCACTTATCGAAAG 412
||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 354 AAAGCACTTTGTCTCGAAGCTGGTTGGGTCGTTCACGAAGATGGCACCACTTATCGAAAG 413
Query 413 GGTTCTCGACCAACAGAAACAACAGTGCCGTGTTCGTCAATCCAACTTAGTCCACAATCA 472
|||||||||||||||||| ||||| | |||||||||||| |||||||| |||||||||
Sbjct 414 GGTTCTCGACCAACAGAAGCAACACCGTTGTGTTCGTCAATTCAACTTAGCCCACAATCA 473
Query 473 TCGGCCTTTCAAAGCCCAATTCCTTCGTATCAAGCTAGCCCTTCATCGTCATCTTACCCA 532
||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct 474 TCGGCCTTTCAAAGCCCAATTCCGTCGTACCAAGCTAGCCCATCATCGTCGTCTTACCCA 533
Query 533 AGTCCGACCC-----G---------------G-TTTGACCCGAATCAATCCTCGACTTAT 571
|||||||||| | | |||||||||||||||||||||||||||
Sbjct 534 AGTCCGACCCGATTTGATCACATTCCAAACCGATTTGACCCGAATCAATCCTCGACTTAT 593
Query 572 CTCATTCCCTATCTCCAAAACCTAGCTTCGTCTGGAAACCTCGCTCCTCTACGAATTTCC 631
|||||||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 594 CTCATTCCTTATCTACAAAACCTTGCTTCATCAGGAAACCTCGCTCCTCTACGAATTTCC 653
Query 632 AATAGTGCCCCTGTTACACCGCCGATTTCTTCACCTAGAAGATCAAATCCGAGACTTCCG 691
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 654 AATAGTGCCCCTGTTACACCGCCGATTTCTTCACCTAGAGGGTCAAATCCGAGACTTTCG 713
Query 692 AGATGGCAAAGCAGTAATTTCCCAGTCTCAGCTCCGTCAAGCCCAACACGGCGTCTCCAT 751
||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 714 AGATGGCAAAGTAGTAATTTTCCAGTCTCGGCTCCGTCAAGCCCAACGCGGCGTCTCCAC 773
Query 752 CACTACACATCGATTCCAGAATGCGATGAATCGGATGTTTCGACGGTTGATTCTTGTCGA 811
||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 774 CACTATACATCGATTCCAGAATGCGATGAATCGGATATTTCGACGGTTGATTCGTGTCGA 833
Query 812 TGGGGAAATTTCCAATCGGTTAACGTTTCTCAGACATGTCCTCCGTCGCCGACATTTAAC 871
||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 834 TGGGGAAATTTCCAACCGGGTAACGTTTCTCAGACATGTCCTCCGTCGCCGACTTTTAAC 893
Query 872 CTGGTCGGAAAAAGCGTTAGCTCCGTCGGAG-TAGATGTGTCGGTGAAGCCGTGGGAAGG 930
|| |||||||||||||||| | || |||| | || |||||||||||||||||||||||
Sbjct 894 CTCGTCGGAAAAAGCGTTAACGGCGGGGGAGGT-GACGTGTCGGTGAAGCCGTGGGAAGG 952
Query 931 TGAGAAGATTCACGATGTTGGTATCGATGACTTGGAGCTGACGCTAGGTCACAACACCAA 990
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 953 TGAGAAGATTCACGATGTTGGTATCGATGACTTGGAGCTGACGTTAGGTAACAACACCAA 1012
Query 991 AGGACGCGGCTAGGTTAATATCGTGGTTT-AACTATTTAGTCGGGTCCGGTACGAGATT- 1048
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||
Sbjct 1013 AGGACGCGGCTAGGTTAATATCGTAGTTTTAACTATTTAGTCGGGTCCGGTACGGGATTT 1072
Query 1049 GGTTCCGGTTAAATCGTAGCTAATAGATTGGTCTT--T----GTCTTCATGACTATTTTG 1102
|||||||||| || |||||||||||| |||||||| | |||||||||||||||| |
Sbjct 1073 GGTTCCGGTTTAACCGTAGCTAATAGGTTGGTCTTGGTCTTAGTCTTCATGACTATTT-G 1131
Query 1103 TACAGTCATTATCA 1116
||||||||||||||
Sbjct 1132 TACAGTCATTATCA 1145
Score = 65.8 bits (35), Expect = 8e-10
Identities = 38/39 (97%), Gaps = 1/39 (3%)
Strand=Plus/Plus
Query 1156 ttttATATGTAATGGTGGATAATGAAAAATGCAAGTGTG 1194
|||| ||||||||||||||||||||||||||||||||||
Sbjct 1163 TTTT-TATGTAATGGTGGATAATGAAAAATGCAAGTGTG 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5