BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50751.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937916 jgi|Araly1|937916|scaffold_502107.1 145 1e-34
> Ahg937916 jgi|Araly1|937916|scaffold_502107.1
Length=773
Score = 145 bits (78), Expect = 1e-34
Identities = 85/88 (97%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 1 ATGGGAATCATGTATATGTTACGTACCAGAGATTTGTGTGCCCTGGTGTGTGTGCCACAC 60
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 102 ATGGGAATCATG--TATGTTACGTACCAGAGATATGTGTGCCCTGGTGTGTGTGCCACAC 159
Query 61 ACGTGCGACACAGAAACCTCGAGCCGGA 88
||||||||||||||||||||||||||||
Sbjct 160 ACGTGCGACACAGAAACCTCGAGCCGGA 187
Score = 137 bits (74), Expect = 2e-32
Identities = 89/95 (94%), Gaps = 6/95 (6%)
Strand=Plus/Plus
Query 61 ACGTGCGACACAGAAACCTCGAGCCGGACCGGAGCTATGGGACCCATTAAGCCTTCGAGC 120
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 222 ACGTGCGACACAGAAACCTCGA----G-CCGGAGCTATGGGACCCATTAAGCCTTCGAGC 276
Query 121 CCTACAATGCACGTGACTGTGGGGATCAAAAATTT 155
||||||||||||||||||||||||||||||| |||
Sbjct 277 CCTACAATGCACGTGACTGTGGGGATCAAAA-TTT 310
Score = 52.8 bits (28), Expect = 8e-07
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 61 ACGTGCGACACAGAAACCTCGAGCCGGA 88
||||||||||||||||||||||||||||
Sbjct 191 ACGTGCGACACAGAAACCTCGAGCCGGA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 5995556977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5