BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50760.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937924 jgi|Araly1|937924|scaffold_502115.1 1712 0.0
Ahg472152 jgi|Araly1|472152|fgenesh2_kg.1__2106__AT1G19300.1 300 2e-80
> Ahg937924 jgi|Araly1|937924|scaffold_502115.1
Length=1066
Score = 1712 bits (927), Expect = 0.0
Identities = 1014/1056 (96%), Gaps = 6/1056 (1%)
Strand=Plus/Plus
Query 1 CACAAAAATATGCACTCGAAG-T-TTATATTATATCTCAGCATCCTCGCCGTATTCACCG 58
|||||||||||||||||| || | || |||||| ||||| |||||||||||| |||||||
Sbjct 12 CACAAAAATATGCACTCG-AGCTGTT-TATTATCTCTCACCATCCTCGCCGTCTTCACCG 69
Query 59 TCTCTTTCGCCGGCGGCGAGAGATTCAAAGAAGCTCCAAAGTTCTTCAACTCCCCGGAGT 118
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TCTCTTTCGCTGGCGGCGAGAGATTCAAAGAAGCTCCAAAGTTCTTCAACTCCCCGGAGT 129
Query 119 GTCTAACCATCGAAAACGATGAAGATTTCGTTTGTTCAGACAAAGCCATCCACGTGGCAA 178
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 130 GTCTAACCATCGAAAACGACGACGATTTCGTTTGTTCAGACAAAGCCATCCACGTGGCAA 189
Query 179 TGACCTTAGACACAGCTTACCTCCGTGGCTCAATGGCCGTGATTCTCTCCGTCCTCCAAC 238
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 190 TGACCTTAGACGCAGCTTACCTGCGTGGCTCAATGGCCGTGATTTTCTCCGTCCTCCAAC 249
Query 239 ACTCTTCTTGTCCTCAAAACATTGTTTTCCACTTCGTCACTTCAAAACAAAGCCACCGAC 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 250 ACTCTTCTTGTCCTCAAAACATTGTTTTCCACTTCGTCACTTCAAAACAAACCCACCGAC 309
Query 299 TCCAAAACTACGTCGTTGCTTCTTTTCCCTACTTGAAATTCCGAATTTACCCTTACGACG 358
| ||||||||||||||| ||||||| ||||||||||||||||| || |||||||||||||
Sbjct 310 TACAAAACTACGTCGTTTCTTCTTTCCCCTACTTGAAATTCCGGATATACCCTTACGACG 369
Query 359 TAGCCGCCATCTCCGGCCTCATCTCAACCTCCATCCGCTCCGCGCTAGACTCTCCGCTAA 418
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 370 TAGCCGCCATCTCCGGCCTTATCTCAACCTCCATCCGCTCAGCCCTAGACTCTCCGCTAA 429
Query 419 ACTACGCAAGAAACTACCTCGCCGACATTCTTCCCACGTGCCTCTCACGTGTCGTATACC 478
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 430 ACTACGCAAGAAACTACCTCGCCGACATTCTCCCCACATGCCTCTCACGTGTCGTATACC 489
Query 479 TAGACTCAGATCTCATACTCGTCGATGACATCTCCAAGCTCTTCTCCACTCACATCCCTA 538
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 490 TAGACTCAGATCTCATACTCGTCGACGACATCTCCAAGCTCTTCTCCACTCACATCCCTA 549
Query 539 CCGACGTCGTTTTAGCCGCGCCTGAGTACTGCAACGCAAACTTCACGACTTACTTTACTC 598
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 550 GCGACGTCGTTTTAGCCGCGCCTGAGTACTGCAACGCAAACTTCACCACTTACTTTACTC 609
Query 599 CGACGTTTTGGTCAAACCCTTCTCTCTCCATCACACTATCCCTCAACCGCCGTGC-TACA 657
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| | | ||
Sbjct 610 CGACGTTTTGGTCAAACCCTTCTCTTTCCATCACACTCTCCATCAACCGCCGT-CGTCCA 668
Query 658 CCGTGTTACTTCAACACCGGAGTGATGGTCATCGAGTTAAAGAAATGGCGAGAAGGAGAT 717
||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 669 CCGTGTTACTTCAACACCGGAGTGATGGTTATCGAGCTAAAGAAATGGCGCGAAGGAGAT 728
Query 718 TACACGAGGAAGATCATAGAGTGGATGGAGTTACAAAAACGGATAAGAATCTACGAGTTA 777
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TATACGAGGAAGATCATAGAGTGGATGGAGTTACAAAAACGGATAAGAATCTACGAGTTA 788
Query 778 GGCTCTTTACCACCGTTTTTACTTGTCTTCGCCGGAAACATAGCTCCGGTAGATCACCGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GGCTCTTTACCACCGTTTTTACTTGTCTTCGCCGGAAACATAGCTCCGGTAGATCACCGG 848
Query 838 TGGAACCAACACGGTTTAGGAGGAGATAATTTTAGAGGACTGTGTCGAGATTTGCATCCA 897
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 849 TGGAACCAACATGGTTTAGGAGGAGACAATTTCAGAGGACTGTGTCGAGATTTGCATCCA 908
Query 898 GGTCCAGTGAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGGTAAGGTTAGATGAT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 909 GGTCCAGTGAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGGTAAGGTTAGACGAT 968
Query 958 GGTCGACCTTGCCCGCTTGATGCACTTTGGGTTCCATATGATTTGTTAGAGTCACGGTTC 1017
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GGTCGACCTTGCCCGCTCGATGCACTTTGGGTTCCATATGATTTGTTAGAGTCACGGTTC 1028
Query 1018 GACCTTATCGAGAGTTAAATTTTAGATGTTAGTTTT 1053
||||||||||||||||||||||||||||||||||||
Sbjct 1029 GACCTTATCGAGAGTTAAATTTTAGATGTTAGTTTT 1064
> Ahg472152 jgi|Araly1|472152|fgenesh2_kg.1__2106__AT1G19300.1
Length=1437
Score = 300 bits (162), Expect = 2e-80
Identities = 642/865 (74%), Gaps = 67/865 (8%)
Strand=Plus/Plus
Query 167 TCCACGTGGCAATGAC-CTTAGACACAGCTTACCTCCGTGGCTCAATGGCCG-TGATTCT 224
|||||||||| ||||| | | ||| | || ||| | || || ||| | |||| | ||||
Sbjct 342 TCCACGTGGCGATGACAC-TCGACGCCGCCTACATTCGCGGTTCAGTCGCCGCCG-TTCT 399
Query 225 CTCCGTCCTCCAACACTCTTCTTGTCCTCAAAACATTGTTTTCCACTTCGTCACTTCAAA 284
|||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||
Sbjct 400 CTCCGTCCTCCAACACTCTTCTTGCCCTGAAAACATTGTTTTCCACTTCGTCGCCTCTGC 459
Query 285 A-CAAAGCC-AC-CGACT-CCAAAA-CTACGTCGT-TGCTTCT-TTTCCCT-AC-TTGAA 335
| ||| || || || || | | | | | | || || ||||||| || ||||
Sbjct 460 TTCC--GCCGACGCGTCTTCCTTACGCGCCACCATCTCCTCCTCTTTCCCTTACCTTGAT 517
Query 336 ATTC-C-GAATTTACC-CTTACGACGTAGCCGCCATCTC-CGGCCTCATCTCAACCTCCA 391
||| | | | ||| ||| | |||| || || |||| || ||| ||||| |||| |
Sbjct 518 -TTCACCG--TCTACGTCTT-CAACGTCTCCTCCGTCTCTCG-CCTTATCTCCTCCTCTA 572
Query 392 TCCGCTCCGCGCTAGACTCTCCGCTAAACTACGCAAGAAACTACCTCGCCGA-CATTCTT 450
|||||||||| ||||||| ||| ||||||||||||||| ||||||||| || | | ||
Sbjct 573 TCCGCTCCGCACTAGACTGTCCTTTAAACTACGCAAGAAGCTACCTCGCTGATC-TCCT- 630
Query 451 CCCACG-TGCCTCTCAC-GTGTCGTATACCTAGACTCAGATCTCATACTCGTCGATGACA 508
||| | ||| || | | | ||||| ||||||||||| ||||| || |||||||| ||||
Sbjct 631 CCCTCCATGCGTC-CGCCGCGTCGTCTACCTAGACTCCGATCTAATCCTCGTCGACGACA 689
Query 509 TCTCCAAGCTCTTCTCCACTCACATCCCTACCGACG-T-C-GTTTTAGCCGCGCCTGAGT 565
|| | || ||| | |||| | ||| | ||| | | | || | |||||||| || |
Sbjct 690 TCGCAAAACTCGCCGCCAC--AGATCTCGGCCGT-GATTCAGTCCTCGCCGCGCCGGAAT 746
Query 566 ACTGCAACGCAAACTTCACGACTTACTTTAC-TCCGACGTTTTGGTCAAACCCTTCTCTC 624
|||||||||| || ||||| | ||||| || || || || |||||||| || |||||
Sbjct 747 ACTGCAACGCCAATTTCACTTCATACTTCACATCA-ACCTTCTGGTCAAATCCGACTCTC 805
Query 625 TCCATCACACTATCCCTCAACCGCCGTGCTACACCGTGTTACTTCAACACCGGAGTGATG 684
|| | || || || | | | | ||| || ||||||||||||||||| |||
Sbjct 806 TCTTTAAC-CT-TCGC-CGATAGAAAAGCT------TGCTACTTCAACACCGGAGTCATG 856
Query 685 GTCATCGAGT-TAAAGAAATGGCGAGAAGGAGATTACACGAGGAAG-ATC-ATAGAGTGG 741
|| ||||| | | | ||||| | ||| | |||||| | | ||| | |||||||
Sbjct 857 GTGATCGA-TCTCTCGCGGTGGCGCGGAGGCGCGTACACGTC-ACGCATCGA-AGAGTGG 913
Query 742 ATGGAGTTACAAAA-ACGGATAAGAATCTACGAG-TTAGGCTCTTTACCACCGTTTTTAC 799
|||| | | ||||| | | || ||||| |||||| || || || |||||||||||||| |
Sbjct 914 ATGGCGATGCAAAAGA-GAATGAGAATTTACGAGCTT-GGTTCGTTACCACCGTTTTTGC 971
Query 800 TTGTCTTCGCCGGAAACAT-AGCTCCGGTAGATCACCGGTGGAACCAACACGGTTTAGGA 858
| || |||||||| || | |||||| |||| || |||||||| ||||||||||||
Sbjct 972 TGGTTTTCGCCGGTTTGATTAAA-CCGGTAAATCATCGATGGAACCAGCACGGTTTAGGA 1030
Query 859 GGAGATAATTTTAGAGGACTGTGTC-GAGATTTGCATCCAGGTCCAGTGAGTTTGTTGCA 917
|| |||||||| |||||||| || | ||||| |||| || ||||| |||||| |||||||
Sbjct 1031 GGTGATAATTTCAGAGGACTATG-CAGAGATCTGCACCCTGGTCCGGTGAGTCTGTTGCA 1089
Query 918 TTGGAGTGGGAAAGGGAAGCCATGGG-TAAGG-TTAGATGATGGTCGACCTTGCCCGCTT 975
||||||||||||||| |||||||||| || || || || | |||||| ||||| || ||
Sbjct 1090 TTGGAGTGGGAAAGGTAAGCCATGGGCTA-GGCTT-GACGCTGGTCGGCCTTGTCCT-TT 1146
Query 976 -GATGCACTTTGGGTTCCATATGAT 999
|| || ||||||| ||| ||||||
Sbjct 1147 AGACGCGCTTTGGGCTCCGTATGAT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5