BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50770.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485424 jgi|Araly1|485424|fgenesh2_kg.5__1416__AT3G50770.1 870 0.0
> Ahg485424 jgi|Araly1|485424|fgenesh2_kg.5__1416__AT3G50770.1
Length=596
Score = 870 bits (471), Expect = 0.0
Identities = 557/598 (93%), Gaps = 7/598 (1%)
Strand=Plus/Plus
Query 30 ATGGCAACTCAAAAAGAGAAACCTTCCTCCAATTCTTTCAAATGGTTTTCCACCAAAACC 89
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCTACAAGAGAAACCTTCCTCCAATTCTTTCAAATGGTTTTCCACCAAAACC 60
Query 90 TTAAAGTTAAACCTTAGTTTCCAAAACCGACGAAGATCACCAAAATCAAACTCTTCGTCA 149
||||||||||||||||||||||||||||||||| ||||||||||||| || || ||||||
Sbjct 61 TTAAAGTTAAACCTTAGTTTCCAAAACCGACGAGGATCACCAAAATCTAATTCCTCGTCA 120
Query 150 ACCTTAAACTCTCCAAGAAGCAACAGTGATG---ACAACAACAACATAAAGAGTCACCAG 206
||||||||||| ||||||||||||| ||||| |||||||||||| ||| ||||||||
Sbjct 121 ACCTTAAACTCCCCAAGAAGCAACACTGATGACAACAACAACAACACAAAAAGTCACCAC 180
Query 207 GCCTCCAAAGAAGAGCTCCGTCAAGTCTTCAGCCATTTCGACAGCGACGGCGACGGTAAG 266
|||||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 181 GCCTCCAATGAAGAGCTCCGTCGAGTCTTCAGCCATTTTGACAGCGACGGTGACGGTAAG 240
Query 267 ATCTCAGCCTTTGAGCTCAGACATTACTTCGGCTCTGTCGGTGAGTATATATCTCACGAG 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTCAGCCTTTGAGCTCAGACATTACTTCGGCTCTGTCGGTGAGTATATATCTCACGAG 300
Query 327 GCAGCTCAAGAGGCGATAAACGAAGTTGACACTGACGCAGACGGGTCTCTAGGGTTTGAG 386
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 301 GCAGCTCAAGAGGCGATAAACGAAGTTGACACCGACGCAGACGGGTCTTTAGGGTTTGAG 360
Query 387 GACTTT-GTTGGATTGATGACAAGAAGAGATCTTTACGGTGACGGTGAAGTTGATGGCGA 445
|| ||| |||||| | |||||||||||||||||| | ||| ||||||| | ||||||||
Sbjct 361 GA-TTTCGTTGGACTAATGACAAGAAGAGATCTTGATGGTAACGGTGACGGTGATGGCGG 419
Query 446 TGGAGAGTTGAAGACAGCGTTTGAGATGTTCGAGGTGGAAAAAGGATCAGGCTGCATAAC 505
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 420 CGGAGAGTTGAAGACAGCGTTTGAGATGTTCGAGGTGGAAAAAGGATCAGGTTGCATTAC 479
Query 506 ACCAAAGGGTTTGCAAAAGATGCTTGTGAAGTTAGGG-GAATCAAGAACGTACGGAGAGT 564
|||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||||
Sbjct 480 ACCAAAGGGTTTGCAAAAGATGCTTGCAAAGTT-GGGAGAATCAAGAACGCACGGAGAGT 538
Query 565 GTGAAGCCATGATAAAGTTTTACGATATAGATGGTAATGGAATTCTTGATTTTCATGA 622
||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 539 GTGAAGCTATGATAAAGTTTTACGATATTGATGGTAATGGAGTTCTTGATTTTCATGA 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5