BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50780.1
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323639 jgi|Araly1|323639|fgenesh1_pm.C_scaffold_5001183 2529 0.0
> Ahg323639 jgi|Araly1|323639|fgenesh1_pm.C_scaffold_5001183
Length=1557
Score = 2529 bits (1369), Expect = 0.0
Identities = 1497/1559 (96%), Gaps = 7/1559 (0%)
Strand=Plus/Plus
Query 194 ATGGCGGAGATCAAGAATGCTAAAGTAGAACAAAGGCAAACGAAGATTAGGAATGTTCCA 253
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAGATCAAGATTGCAAAAGTAGAACAAAGGCAAACGAAGATTAGGAATGTTCCA 60
Query 254 GTAGCTGTAACTCCTGAAGGTTTCTGGTGTTGTCCTTCTCCTGTTGCGTTTCAAAAGACT 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAGCTGTAACTCCTGAAGGTTTCTGGTGTTGTCCTTCTCCTGTTGCGTTTCAAAAGACT 120
Query 314 CTTAAATCTCACAACTCTCTCACCAAACACAAGCAATCTTCTCCTGCTCTTCAACCTCCT 373
|||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||
Sbjct 121 CTTAAATCTCACAACTCTCTCACCAAACACAAACAATCTTCTCCT-C-C-TCAACCTCCT 177
Query 374 AAGCCGGAGAAGAAACCATCTTCGACTACTATTAGATCCGTCATTGCTTCTGATGAAACT 433
|| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 178 AAACCAGAGAAGAAACCATCTTCGACTACTATTAGATCCGTCATTGCCTCCGATGAAACT 237
Query 434 CAACAGAATTTGGGTAG-TTTTGATACTGTTCATAGTATTGCTGTTCCTGCGACGGTTCA 492
||||||||||||||| | || ||| || |||||||||||||||||||| |||||||||||
Sbjct 238 CAACAGAATTTGGGT-GATTCTGACACCGTTCATAGTATTGCTGTTCCAGCGACGGTTCA 296
Query 493 AGAGAGACCACAGAGGCAAAAGGTTGAGACTTTACCGAGGAAAGTTGCTATTGAGTTTGG 552
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 297 AGAGAGACCACAGAGGCAAAAGGTTGAGACTTTACCGAGGAAAGTGGCGATTGAGTTTGG 356
Query 553 TGAACCGGGAAGTAGTGATGCTAAAGTGATTTTGGTTGGGAAGCAAGGTTTTTGTGTGAA 612
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGAACCAGGAAGTAGTGATGCTAAAGTGATTTTGGTTGGGAAGCAAGGTTTTTGTGTGAA 416
Query 613 GCTTAGTGTTCATAAGAAAGTTTTGGTTGATCATAGTTGTTTCTTTGCTAAGAAACTAGC 672
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 GCTGAGTGTTCATAAGAAAGTTTTAGTTGATCATAGTTGTTTCTTTGCTAAGAAACTAGC 476
Query 673 TGAGAAAGATTCGGTTTTTGCTTGTCTTGAGATTGAGAGCTGTGAAGATGCTGAGCTTTA 732
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 477 TGAGAAAGATTCTGTTTTTGCTTGTCTTGAGATTGAGAGTTGTGAAGATGCTGAGATCTA 536
Query 733 CGTTGAGACTATTGGACTTATGTATTGTAAAGATATGAAGCAACGACTTATGAAACAAAA 792
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 537 CGTTGAGACCATTGGACTTATGTATTGTAAAGATATGAAGCAACGGCTTATGAAACAGAA 596
Query 793 TGTTAGCAGAGTTCTTCGTGTCCTCAAGGTTGCAGAGCTTCTTGGTTTTAGTTCATGTAT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGTTAGCAGAGTTCTTCGTGTCCTCAAGGTTGCAGAGCTTCTTGGTTTTAGTTCATGTAT 656
Query 853 ACAGTCTTGTTTGGATTACTTAGAAGCTGTGCCTTGGGTTGGGGAAGAAGAAGAGGAGAA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACAGTCTTGTTTGGATTACTTAGAAGCTGTGCCTTGGGTTGGGGAAGAAGAAGAGGAGAA 716
Query 913 AGTTATCTCATCGATTCTTAGATTAAAAACTGAAGGAGTTGGTGTCACGCCTGTTCTCAA 972
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 717 AGTTATCTCATCGATTCTTAGATTAAAAACCGAAGGAGTTGGTGTCACGCCTGTTCTCAA 776
Query 973 ACGAGTTGCTTCTAATGCTGTGGATCCACCAAAGGAGACGCTATCACGCATCATTGAGCT 1032
|||||||||||||| |||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 777 ACGAGTTGCTTCTAGTGCTGTCGATCCACCAAAGGAGACGCTATCACGCATTATCGAACT 836
Query 1033 TGTTTTAAGAAGCAAAGAGGAGAAAAGTCGACGTGAGATGAAATCTATTGTTCTGAAGCT 1092
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 837 TGTTTTAAGAAGCAAAGAGGAGAAAAGTCGACGTGAGATGAAATCTATTGTCCTGAAGCT 896
Query 1093 TCTTAGAGAACAGAATGGAGCCAATGTAGCTGATAACTTCAATGATACAATCTATTCCTC 1152
|||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 897 TCTTAGGGAACAGAATGGGGCCAATGTAGCTGATAACTTCAACGAAACAATCTATTCCTC 956
Query 1153 TTGCCA-AACCTGCTTGGATTCGGTTCTGTCTCTGTTTAAACAAGCTTCTGAGGGAGAGA 1211
|||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTGCCAGAAC-TGCTTAGATTCGGTTCTGTCTCTGTTTAAACAAGCTTCTGAGGGAGAGA 1015
Query 1212 AACCTGAGACTGATACCAAACAGATTGCTGTAGAAGCAGATAACCTCACGTGGCTCCTTG 1271
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 1016 AACCTGAGACTGATACCAAACAGATTGCTGTAGAAGCGGATAACCTCACGTGGTTGCTTG 1075
Query 1272 ATGTGTTAGCGGAAAGACAAGCTGCAGAGGAATTCTCAGTCACATGGGCAAACCAAAAGG 1331
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1076 ATGTATTAGCGGAAAGACAAGCTGCAGAGGAATTCTCAATCACATGGGCAAACCAAAAGG 1135
Query 1332 AGCTCGCTTTGTTACATGAGAAGCTTCCTTTAATGTCTCGTTACCATATAAGCCGTGTAA 1391
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1136 AGCTTGCTTTGTTACACGAGAAGCTTTCTTTAATGTCTCGTTACCATATAAGCCGTGTAA 1195
Query 1392 CATCTCGGCTCTTTATAGGGATTGGGAGAGGAGAATTGTTGCCTTCAAAGGACACTCGAC 1451
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CATCTCGACTCTTTATAGGGATTGGGAGAGGAGAATTGTTGCCTTCAAAGGACACTCGAC 1255
Query 1452 TTCTGCTACTAACAACATGGTTGCAACCGTTGTTCAATGACTATAACTGGCTTCAACATG 1511
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1256 TTCTGCTACTAACTACATGGTTGCAACCGTTGTTCAATGACTATAACTGGCTCCAACATG 1315
Query 1512 GTTGCAGATCGTTTGATGGTAAACTAGTGGAGGAAGGAATTGGTCGGACGATACTGACAC 1571
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1316 GTTGCAGATCGTTTGATGGTAAACTAGTGGAGGAAGGTATTGGTCGGACGATACTGACAT 1375
Query 1572 TACCATTGGAAGATCAGCAGAGCATTTTACTGTCGTGGCTCGGGAGTTTTCTAAACGGAG 1631
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1376 TGCCATTGGAAGATCAGCAGAGCATTTTGCTGTCGTGGCTCGGGAGTTTTCTAAACGGGG 1435
Query 1632 GAGATGGATGTCCGAATCTTCAGAGAGCTTTTGAGGTTTGGTGGAGACGATCTTTCATTA 1691
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1436 GAGATGGATGTCCGAATCTTCAGAGAGCTTTCGAGGTTTGGTGGAGACGGTCTTTCATTA 1495
Query 1692 GACCTTACTCAGATCGTCAAGCTAATGGTTCGTGTCAAACAGATTCAACTTCAAAAGAG 1750
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1496 GACCTTACTCAGATCTTCAAGCTAATGGTTCGTGTCAAACAGATTCGACTTCAAAAGAG 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75913858285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5