BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50790.1
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485427 jgi|Araly1|485427|fgenesh2_kg.5__1419__AT3G50790.1 2037 0.0
> Ahg485427 jgi|Araly1|485427|fgenesh2_kg.5__1419__AT3G50790.1
Length=1385
Score = 2037 bits (1103), Expect = 0.0
Identities = 1224/1281 (96%), Gaps = 14/1281 (1%)
Strand=Plus/Plus
Query 1 CAAATTCGTTGTGGTTACCAAAACGACGACGTGGTGAAGCAAATGGCGAGAGTCGCCTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAATTCGTTGTGGTTACCAAAACGACGACGTGGTGAAGCAAATGGCGAGAGTCGCCTTT 60
Query 61 GCCACATCATCGCCGCCGTTAATCTCATCAGTTCGTACTCTCCGCCGTCATTTCTCAGTT 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 61 GCCACATCATCGCCGCCGTTAATCTCATCAGTTCGTACACTCCGCCGTCATTTCTCAGCT 120
Query 121 TTCGCCGCCGCG-------AA-T-CCAGAAATGTCTCGTCCCTCTCACCACAGCTCTCTC 171
|||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGCCGCCGCGAATCCAAAACTCCCAGAAATGTCTCGTCCCTCTCACCACAGCTCTCTC 180
Query 172 GAAGTTATCGGCGGAGGAAGTGATCGTTTCTTACCGTCGTTAAAGGACTCACTCGCTAAA 231
|||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||
Sbjct 181 GAAGTTATCGGCGGAGGAAGCGATCGTTTCTTACCGGCGTTAAAAGACTCACTCGCTAAG 240
Query 232 CCGTACAATGCGTTTCCTCTAATCGGATTTAACCGCCACGTGGAGACAATCTACGCATCT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CCGTACAATGCGTTTCCTCTAATCGGATTTAACCGCCACGTGGAGACAATCTACGCAGCT 300
Query 292 TTCTTTCGTTCTGTTCCTTTCGTTAGACTCCGCCGTGAATGTCTCCGAACTAAAGACAAC 351
|||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||
Sbjct 301 TTCTACCGTTCTGTTCCTTCCGTTAGACTCCGCCGTGAGTGTCTCCGTACTAAAGACAAC 360
Query 352 GGCTCTGTTGCTTTGGATTGGGTCGCCGGCGAAGATAGGCACTTTCCTCCTG-ATTCACC 410
|||||||||||||| |||||||||||||| || |||| ||| ||||||||| | || ||
Sbjct 361 GGCTCTGTTGCTTTAGATTGGGTCGCCGGTGACGATAATCACCTTCCTCCTGCA-TCTCC 419
Query 411 AATCCTCATTTTGTTGCCAGGTTTAACAGGAGGAAGTCAAGATTCGTATGTTAGACATAT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AATCCTCATTTTGTTGCCAGGTTTAACAGGAGGAAGTCAAGATTCGTATGTTAGACATAT 479
Query 471 GTTGTTAAGAGCTCAAAGTAAAAAATGGCGTTGTGTTGTGTTTAATAGCCGTGGTTGTGG 530
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 480 GTTGTTAAGAGCTCAAAGTAAAAAATGGCGTTGTGTTGTGTTTAATAGCCGAGGATGTGG 539
Query 531 AGATAGTCCTGTGACCACTCCTCAGTTCTACTCGGCTTCGTTTTTAGGAGACATTGGTGA 590
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 CGATAGTCCTGTGACCACTCCTCAGTTCTACTCGGCTTCGTTTTTAGGAGATATTGGTGA 599
Query 591 AGTGATTGATCATGTTGTTGATAAATTCCCAAAAGCCAATTTGTATGCTGCTGGATGGTC 650
||||||||||||||||| ||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 600 AGTGATTGATCATGTTGGTGAGAAATTCCCAAAAGCTAATTTGTATGCAGCAGGATGGTC 659
Query 651 TCTTGGAGGCAACATTCTTGTTAACTATTTGGGTCAGGAATCTCATAACTGTCCTCTCAC 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 TCTTGGAGGCAACATTCTTGTTAACTATTTGGGTCAGGAATCTCATAACTGTCCTCTCTC 719
Query 711 TGCTGCTGTTTCTTTGTGCAATCCTTTTGATTTGGTTATAGCAGATGAAGATTTCCATAA 770
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGCTGCTGTTTCGTTGTGCAATCCTTTTGATTTGGTTATAGCAGATGAAGATTTCCACAA 779
Query 771 GGGTTTTAACAATGTTTATGACAAGGCCTTGTCGAAATCTCTTCGTAGAATATTTAGCAA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGGTTTTAACAATGTTTATGACAAGGCCTTGTCGAAATCTCTTCGTAGAATATTTAGCAA 839
Query 831 ACATTCTCTTCTTTTTGAAGACATAGGAGGTGAATTTAACATTCCTTTGGCTGCAAATGC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACATTCTCTTCTTTTTGAAGACATAGGAGGTGAATTTAACATTCCTTTGGCTGCAAATGC 899
Query 891 TGAGACGGTTAGGGATTTCGATGATGGCTTAACCCGAGTCTCGTTCGGTTTCAAATCAGT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGAGACGGTTAGGGATTTCGATGATGGCTTAACCCGAGTCTCGTTCGGTTTCAAATCAGT 959
Query 951 AGATGAGTACTATTCCAAGTCGAGCAGCTCCAAAGCTATAAAACATGTCCGCATACCCTT 1010
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 960 GGATGAGTACTATTCCAAGTCGAGCAGCTCCAAATATATAAAACATGTCCGTATACCCTT 1019
Query 1011 GCTTTGCATTCAGGCAGCAAATGATCCCATTGCTCCTGAGAGAGGTATCCCTCGCGATGA 1070
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1020 GCTTTGCATTCAGGCAGCTAATGATCCGATTGCTCCTGATAGAGGTATCCCTCGCGATGA 1079
Query 1071 CATCAAGGCAAACCCAAACTGCGTGTTGATTGTGACACCAAGAGGAGGGCACTTGGGATG 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CATCAAGGCAAACCCAAACTGCGTGTTGATTGTGACACCAAGAGGAGGGCACTTGGGATG 1139
Query 1131 GGTGGCAGGTGAAGAAGCTCCCAACGGAGCTCCTTGGACCGACCAAGTGGTTATGGAGTT 1190
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGTGGCAGGTGAAGAAGCTCCGAACGGAGCTCCTTGGACCGACCAAGTGGTTATGGAGTT 1199
Query 1191 TCTGCAACATGTAGAGAATCGTGAAACCATTAACGGGGAGAGATCTTTCGAGGATGTCCA 1250
||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1200 TCTGCAATATGTAGAGAATCGTGAAACCATTAACGGGGAGAGATCTTTTGACGATG-C-- 1256
Query 1251 TGATCAGATTCAAGTCTAATT 1271
| |||||||||||||||||||
Sbjct 1257 TCATCAGATTCAAGTCTAATT 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53097801530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5