BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50800.1

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937928 jgi|Araly1|937928|scaffold_502119.1                        784    0.0  


> Ahg937928 jgi|Araly1|937928|scaffold_502119.1
Length=505

 Score =  784 bits (424),  Expect = 0.0
 Identities = 479/505 (95%), Gaps = 6/505 (1%)
 Strand=Plus/Plus

Query  78   TACAAAGAAGTACTAAAACAATGGGAGCTTGCGCTTCACGTGAATCTCGGAGAACAGAGA  137
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct  1    TACAAAGAAGTACTAAAACAATGGGAGCTTGCGGTTCACGTGAATCTCGGAGAACGGAGA  60

Query  138  CGGCGAAGCTGATATTACCAGACGGAACATTACAAGAGTTTTCAACGCCGGTGAAAGTGT  197
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  61   CGGCGAAGCTGATATTACCAGACGGAACGTTACAAGAGTTTTCAACGCCGGTGAAAGTGT  120

Query  198  GGCAGATTCTTCAAAAGAATCCTACAAGCTTTGTTTGTAACTCCGACGATATGGATTTCG  257
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  121  GGCAGATTCTTCAAAAGAATCCTACGAGCTTTGTTTGTAACTCCGATGATATGGATTTCG  180

Query  258  ACGACGCCGTTTTAGCTGTCCCTGGAAGCGAGGATCTTCGACCAGGAGAATTGTACTTCG  317
            |||||||||||||||||||  |||| ||||| ||||| || ||||||||||| |||||||
Sbjct  181  ACGACGCCGTTTTAGCTGTTGCTGGCAGCGAAGATCTCCGGCCAGGAGAATTATACTTCG  240

Query  318  TTTTACCATTAACATGGCTTAATCATCCATTGAGAGCAGATGAAATGGCGGCTTTAGCGG  377
            ||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  241  TTTTACCGTTGACATGGCTTAATCATCCATTAAGAGCAGATGAAATGGCAGCTTTAGCGG  300

Query  378  TTAAAGCAAGCTCTGCGCTTGCGAAAAGCGGTGGAGGAGGTTTGAGTTACAACGATGAAG  437
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  301  TTAAAGCAAGCTCTGCGCTTGCGAAAAGCGGTGGAGGCGGTTTGAGTTACAACGATGAAG  360

Query  438  ATGTTGGTGAGTGTAGAGTTAGAAGAGTTAAAAGAAACGGTTGCGGCGGAAGAGGTTGTG  497
            ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct  361  ATGTTGGTGAGTGTAGAGTTAAAAGAGTTAAAAGAAATGGTTGCGGCGGAAGAGGTTGTG  420

Query  498  GTGGTGGTGGT------AAAGGGAGGAGAAAGTTCACGGCGGAGTTGAGTTCAATAGCTG  551
            |||||||||||      ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  421  GTGGTGGTGGTGGTGGTAAAGGGAGGAGAAAGTTTACGGCGGAGTTGAGTTCAATAGCTG  480

Query  552  AGTAGAGGGGTTAAATTGGTTAGTC  576
            |||||||||||||||||||||||||
Sbjct  481  AGTAGAGGGGTTAAATTGGTTAGTC  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25580477307


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5