BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50810.1

Length=736
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485429 jgi|Araly1|485429|fgenesh2_kg.5__1421__AT3G50810.1         647    0.0  


> Ahg485429 jgi|Araly1|485429|fgenesh2_kg.5__1421__AT3G50810.1
Length=705

 Score =  647 bits (350),  Expect = 0.0
 Identities = 386/403 (96%), Gaps = 4/403 (1%)
 Strand=Plus/Plus

Query  138  ATGGAGCATGTGCCGGGATCGTTCGGCACTAGCGCCAGCTTCGCTCTCCGTTTCGGCCAA  197
            |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGAATGTGCCGGGATCTTTCGGCACTAGCGCCAGCTTCGCTCTCCGTTTCGGCCAA  60

Query  198  ACCATTTTCTCAGCTGCTTCGTTGATCTTCATGTGCTTTGATTTCGATTTCTATGATTTC  257
            ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct  61   ACCATTTTCTCAGCTGCTTCGTTGATCTTCATGTGTTTTGATTACGATTTCTATGATTTC  120

Query  258  ACTACTTTCTGCTATTTAGCGA-TGGTGATGGCAATTGTAACTCCATGGAGCATTTTACT  316
            ||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  121  ACTACCTTCTGCTATTTAGCGACTG-TGATGGCAATTGTAACTCCATGGAGCATTTTACT  179

Query  317  TGCCTTGACAGACACATACTCTGTCTTAGTGAAACTCCTTCCTCAAGAATTAAGAGTTCT  376
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  180  TGCCTTGACAGACACATACTCTGTCTTGGTGAAACTCCTTCCTCAAGAATTAAGAGTTCT  239

Query  377  TTCCATCGTTTTCGCCGGTGATTTCGTACTTTCGTTTCTTTCTCTTGG-TGGTGCTTGTG  435
            ||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||
Sbjct  240  TTCCATCGTTTTCGCCGGTGATTTCGTACTTTCATTTCTTTCT-TTGGGTGGGGCTTGTG  298

Query  436  CTGTAGCTAGTGCAACTGAACTGCTTGCGTCTGCTGATGGAAAGATCTGTGATGGTAGCC  495
            |||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||| ||
Sbjct  299  CTGTAGCTAGTGCAACCGAATTGCTTGCGTCTGCCGATGGAAAAATCTGTGATGGTAACC  358

Query  496  TCTGTATCCAATACCAAGTCTCGGCTGCATTGGCTTTCTTGTG  538
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TCTGTATCCAATACCAAGTCTCGGCTGCATTGGCTTTCTTGTG  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27105393987


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5