BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50830.1
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485431 jgi|Araly1|485431|fgenesh2_kg.5__1423__AT3G50830.1 1314 0.0
> Ahg485431 jgi|Araly1|485431|fgenesh2_kg.5__1423__AT3G50830.1
Length=917
Score = 1314 bits (711), Expect = 0.0
Identities = 856/925 (93%), Gaps = 14/925 (2%)
Strand=Plus/Plus
Query 39 TCTGGATTCTGGATACAGCTGGAAGAGAATTaaaagaaaaagaaaaaCACTTCCAACGAA 98
||| |||||||||||||||||||||||||||| |||||||| |||| |||| |||
Sbjct 1 TCTAGATTCTGGATACAGCTGGAAGAGAATTATAAGAAAAA-CAAAA-TCTTCGAAC--- 55
Query 99 GAAGATCGATTTGCTTCGAGTCTCTGAAAGAAGAAGAAAAAATAATGGGGCGTATGGATT 158
||||||||||||||||||||||||| ||||| ||||| |||| ||||||||| ||||||
Sbjct 56 GAAGATCGATTTGCTTCGAGTCTCT--AAGAA-AAGAAGAAATTATGGGGCGTGTGGATT 112
Query 159 ATCTAGCGATGAAGACCGACGACGTCGATACGGT---GGCGTTAGTCAATTCCGATATGG 215
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 113 ATCTAGCGATGAAGACGGACGACGTCGATACGGTGGCGGCGTTAGTCAATTCCGACATGG 172
Query 216 AAGAGCTCAAGGTCGCTGCGAAGAAACTGTTTAGCGATGTTTCGAAGCTTGGTGGATTAG 275
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 173 AAGAGCTCAAGGTCGCTGCGAAGAAACTATTTAGCGATGTTTCGAAGCTTGGTGGATTAG 232
Query 276 GCTTCGGTGTTTCTTTTCTCAAATTCCTCGCTTCTTTCGCTGCCATTTACTTGTTAATTT 335
| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 233 GTTTCGGTGTTTCTTTTCTCAAATTCATCGCTTCTTTCGCTGCCATCTACTTGTTAATAT 292
Query 336 TGGATCGTACCAATTGGAAAACCAAGATGCTTACATCACTCCTAATACCATACATCTTCC 395
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 293 TGGATCGTACAAATTGGAAAACCAAGATGCTTACATCACTTTTAATACCATACATCTTCC 352
Query 396 TTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGTGGAGATGTTGGGAAATGGATTGCTT 455
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 353 TTAGCCTTCCTAGTGTCATTTTTAACTTTCTCAGTGGAGAAGTTGGGAAATGGATTGCTT 412
Query 456 TCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGATTGGCTTGAGATGC 515
|||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCGTCGCAGTTGTACTCCGACTTTTCTTCCCTAAGCATTTCCCAGATTGGCTTGAGATGC 472
Query 516 CAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCACACTTCCTTGCTCACCATATACGTG 575
| |||||||| ||||| || ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 473 CGGGTTCTCTAATCCTTCTGCTGGTAGTTGCTCCACACTTCCTAGCTCACCATATACGTG 532
Query 576 GAACCTGGATAGGCACTGTAATCAGCCTTTTCATTGGATGTTACCTTCTTCAAGAACATA 635
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 533 GAACCTGGATTGGCACTGTAATCAGCCTTTTCATTGGCTGTTACCTTCTTCAAGAACATA 592
Query 636 TTCGAGCATCGGGTGGATTCAGGAACTCATTCACACAGCCCCGTGGAGTATCAAACACTT 695
| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 593 TCCGAGCATCGGGTGGGTTCAGGAATTCATTCACACAGCCCCGTGGAGTGTCAAACACTT 652
Query 696 TAGGGATCATTCTTCTTTTGGTCTACCCTGTCTGGGCTCTAATCGTCCGTGTCATGTAAT 755
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 653 TAGGGATCATCCTTCTTTTGGTCTACCCTGTTTGGGCTCTAATCGTCCGTGTCATATAAT 712
Query 756 CCACATTCCTCTTTCAT-CGACAAGTTGTTTCTTGCTCGGCTGCTCCAATAAACTGCGTG 814
|||||||||| || ||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 713 CCACATTCCTATTCCATTCTCCAAGTTGTTTCTTGCTCGGCTGCTTCAATAAACTGCGTG 772
Query 815 AAACATCGAG--CAGAGCAAGTCTCTATGGTGTTCCTTTCTTCTGATTATGTTGCATACC 872
|||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 773 AAACATCGAGAGCAGAGCAAGAATCTGTGGTGTTCCTTTCTTCTGATTATGTTGCATACC 832
Query 873 CAAATACTACCTCAAGCTCAATCAATGTTCTATGTATaaaaaaaTCTCATTTTTCAACTA 932
|||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||| ||
Sbjct 833 CAAATACTGCCTCAAGCTCAATGAATGTTCTATATATAAAAGAATCTCATTTTTCAAATA 892
Query 933 TTTGTTTGTCCTACTATAAGAAAAA 957
| ||||||||||||| || ||||||
Sbjct 893 TGTGTTTGTCCTACTGTATGAAAAA 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37856056581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5