BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50840.1
Length=2135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485432 jgi|Araly1|485432|fgenesh2_kg.5__1424__AT3G50840.1 2684 0.0
> Ahg485432 jgi|Araly1|485432|fgenesh2_kg.5__1424__AT3G50840.1
Length=1947
Score = 2684 bits (1453), Expect = 0.0
Identities = 1827/1998 (91%), Gaps = 63/1998 (3%)
Strand=Plus/Plus
Query 1 AAATGAGTGCGACTTTGCCTCTTTTCAATGCCCAATTTCTTGAGATTCTGGCTGTTCTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AAATGAGTGCGACTTTGCCTCTTTTCAATGCCCAATTTCTTGAGATTCTGGCTATTCTGC 60
Query 61 ATCCAAATATTAAACAATCAATTCCTTTTATAAAAAGCAAAAGACAGAAATATTTATTAT 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 A--CAAATATTAAACAATCAATTCCTTTTATAAAAAGCAAAAGACAGAAATATTTATTAT 118
Query 121 TAAGCTAAAGAATTGATCAAAAAACTCGATTCACTTTTCTCAAAAACCCGAATATAATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 119 TAAGCTAAAGAATTGATCAAAAAACTCGATTCACTTTTCTCAAAAACCCGAATATAA-C- 176
Query 181 CATTCCCAATAGCTTCCACTTCCATCGAGAGATTTT-CTTTC-TTTGt-ttt--tttCTG 235
|||||||||| ||||||||||||||||||||||||| ||||| ||| | ||| ||| |
Sbjct 177 CATTCCCAATTGCTTCCACTTCCATCGAGAGATTTTGCTTTCATTTTTCTTTGATTT-TC 235
Query 236 TGATTTTC-TCCAATGGCTAACTCCAAGAAGCAAGCATGGtttttttATACCACAGGCTT 294
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 T-ATTTTCCTCCAATGGCTAACTCCAAGAAGCAAGCATGGTTTTTTTATACCACAGGCTT 294
Query 295 ACCAAGTGACATAGAAATCGAAGTTGATGATATAACATTTCATCTTCATAAGTTTCCTCT 354
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 295 ACCAAGTGACATCGAAATCGAAGTTGATGATATAACATTTCATCTCCATAAGTTTCCTCT 354
Query 355 AATGTCaaaaagcaaaaaaCTTCACCAACTAATAACAGAGCAAGAACAGAGTAAAGTTTA 414
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GATGTCAAAAAGCAGAAAACTTCACCAACTAATAACAGAGCAAGAACAGAGTAAAGTTTA 414
Query 415 TTCTCACATCAAGCTCGAGAATTTTCCAGGAGGTTCAGAGATTTTCGAGATGGTGATAAA 474
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 415 TCCTCACATCAAGCTCGAGAATTTTCCGGGAGGTTCAGAGATTTTCGAGATGGTGATAAA 474
Query 475 GATAAGCTACGGTTTCAAAGTCGACATCTCTGTTTCCACAGCTGTTCCACTCCGTTGCGC 534
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 475 GATAAGCTACGGTTTCAAAGTCGACATCTCTGTTTCCACAGCTGTTCCACTACGTTGCGC 534
Query 535 CGCCGAGTATCTAGAAATGACGGAAGAGTACTCACCGGAGAATCTCATTTCAAAAACAGA 594
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 535 CGCCGAGTATCTCGAAATGACAGAAGATTACTCACCGGAGAATCTCATTTCAAAAACAGA 594
Query 595 GAAGTTTCTTTCAGAGTTCGTCTTCACTAACGTACAAGAATCCATCAAAGCGTTGAAAGC 654
|| |||||||||| |||| |||||||||||||||| ||||||||| |||||||| |||||
Sbjct 595 GAGGTTTCTTTCACAGTTTGTCTTCACTAACGTACGAGAATCCATTAAAGCGTTAAAAGC 654
Query 655 TTGTGAATCAGTCTCGTCTTTAGCTGAATCACTCTGTATAACGGAACAGTGTATAGACTC 714
||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 655 TTGCGAATCAGTCTCGTCTTTAGCTGAATCTCTCGGTGTAACGGAACAGTGTATAGACTC 714
Query 715 CATCGTCTTCCAA-GCTTCCTCAACCGATCCGTCGTCGTTTTACGGTTGGCCAATAAACA 773
|||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 715 CATCGTCT-CCAAAGCTTCCTTAACCGATCCGTCGTCGTTTTACGGTTGGCCAATGAACA 773
Query 774 ACGGAGGTATATTCACCGTTGACCGGAAGAAACAGAGCAAAGATTCGAAAACAGAGCTTT 833
| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 774 ATGGAGGTATCTTCGCCGTCGATCGGAAGAAACAGAGCAAAGATTCGAAAACAGAGCTTT 833
Query 834 GGTTCGAAGATCTAACGGAGTTGAGTTTTCCAATCTTCAGACGTGTGATCTTATCCATGA 893
|||| |||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 834 GGTTTGAAGATTTAACGGATTTGAGTTTTCCGATCTTCAGACGTGTGATCTTAACCATGA 893
Query 894 AGTCGAGTG-TCCTGAGTCCTGAGATTGTAGAGAGATCTCTACTTACTTACGCGAAGAAA 952
| ||||| | || | | ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 894 AATCGAGAGATC-TAAATCCTGAGATTGTAGAGAGATCTCTAATTTCTTACGCGAAGAAA 952
Query 953 CACATTCCAGGAATCT-CGCGTTCATCGTCAGCAtcttcatcttcttcttcttcttcCAC 1011
||| |||| ||||| | |||||||||||||| |||||||||||||||| | || |
Sbjct 953 CACGTTCCTGGAAT-TACGCGTTCATCGTCACCATCTTCATCTTCTTC--CA-CT---A- 1004
Query 1012 CACCATAGCTTCCGAGAATCAACAAAGAGAATTATTAGAGACGATAACTTCAGATCTTCC 1071
||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 1005 -----TAGCTTCCGAGAATCAACAAAGAGAATTACTAGAGACAATAACCTCAGATCTTCC 1059
Query 1072 -ATTAACTGCGACGACTACGAGATCTCTCTTCGGTTTGTTACGAGCCGCGATCATTCTCA 1130
|| ||| | || || ||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 1060 CAT-AACCGAAACAACAACGAGATCTCTCTTCGGTTTGTTACGATCAGCGATCATCCTCA 1118
Query 1131 ACGCCTCCGAGAATTGCAGGAAGTTTCTAGAGaaaaaaaTCGGATCGAATCTTGAGAAAG 1190
|| |||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 1119 ACACCTCAGAGAATTGCAGGAAGTTTCTGGAGAAGAAAATTGGTTCGAATCTTGAGAAAG 1178
Query 1191 CTACGCTTGATGATCTTCTCATTCCAAGTTACTCGTATCTCAACGAAACGTTATACGATA 1250
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CTACGCTTGATGATCTTCTAATTCCAAGTTACTCGTATCTCAACGAAACGTTATACGATA 1238
Query 1251 TTGATTTGGTGGAGAGACTCTTACGTCGTTTTCTCGAAAACGTCGCCGTGTCGTCGTCGT 1310
||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||
Sbjct 1239 TTGATTTGGTGGAGAGACTCTTACGCCGTTTTCTTGAAAACGCCGCCGTGTCGTCTTCGT 1298
Query 1311 CATTGACGGTGGTTGGGAGA-TTGATCGACGGAGTTCTCGGTGAAATTGCATCGGACGCT 1369
|||||||||||||||||||| || |||||||||||||| ||||||||||||| |||||||
Sbjct 1299 CATTGACGGTGGTTGGGAGACTT-ATCGACGGAGTTCTTGGTGAAATTGCATTGGACGCT 1357
Query 1370 AATCTTAAACCGGAACAGTTTTATAATCTGGCGGTTTTGCTTCCGGTTCAAGCACGGGTT 1429
||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1358 AATCTTAAACCGGAAAAGTTTTATTATCTGGCGGTTTTGCTTCCGGCTCAAGCACGGGTT 1417
Query 1430 TACGATGATGGACTATACAGAGCCGTCGATATATATTTCAAGACTCATTCATGGATATTG 1489
|||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 1418 TACGATGATGGACTTTACAGAGCCGTCGATATATATTTCAAGACGCATCCATGGATATCG 1477
Query 1490 GAGGAAGAGAAGGAGAAGATTTGTAGCGTGATGGATTGTAGAAAACTGACTGTTGAAGGA 1549
|||| ||| ||||||||||| ||||| || |||||||| ||||||| ||||||||||||
Sbjct 1478 GAGGCAGACAAGGAGAAGATATGTAGTGTAATGGATTGCCGAAAACTAACTGTTGAAGGA 1537
Query 1550 TGCACACACGCGGCACAAAACGAGCGTTTACCACTACGAGCCGTCGTACAAGTTCTGTTT 1609
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 TGCATACACGCGGCACAAAACGAGCGTTTACCACTACGAGCCGTCGTACAAGTTCTGTTT 1597
Query 1610 TTGGAGCAGCTACAGCTCCGGCAAGTAATCACTGGGACTTTACTGACGGAGGAAGACGGT 1669
|||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1598 TTGGAGCAATTACAGCTCCGGCAAGTAATCACCGGGACTTTAGTGACGGAGGAAGACGGT 1657
Query 1670 GATAAAACGGTGGTGGACTT-GGGTAGATGGAAGGAAGCGGTGAAGGAGAATCAGGTGCT 1728
||| |||| ||||||||||| ||| ||||||||| || ||||||||||||||||||||||
Sbjct 1658 GATGAAACCGTGGTGGACTTTGGG-AGATGGAAGAAAACGGTGAAGGAGAATCAGGTGCT 1716
Query 1729 TCGTTTGGATATGGATACGATGAGGACACGAGTGAACCAGCTAGAGAAAGAATGCTTGTA 1788
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 TCGTTTGGATTTGGATACGATGAGGACACGAGTGAACCAGCTAGAGAAAGAATGCTTGTA 1776
Query 1789 CTTGAAGAAAGTGATCGCGAAGATCGACAAAGAAAGTTTGTTGAAGGCGAAGCATGGGGC 1848
||||||||||||||||| |||||||||||||||||||||| | | | || | |
Sbjct 1777 CTTGAAGAAAGTGATCGTTAAGATCGACAAAGAAAGTTTGT-G--GTC-AA---T----C 1825
Query 1849 GGGGAAATGGTCAATCGGGAAGAAGTTCGGATGCAAATTTTCGGCTCAAGTTTGTGATTC 1908
|| | || | ||| |||||||| |||||| || |||| |||||||||||
Sbjct 1826 GG-----T----AA--G--AAG---TTCGGATGTAAATTTACGACTCAGGTTTGTGATTC 1869
Query 1909 ACAGGAGGCAACGATGGTCGATAGAAGATCACGACGTTTTCTTAGTTAGTACATAAATCA 1968
|| |||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct 1870 GCACGAGGCAACGATGGTCGATGGAAGATCACGACGTTTTCTTAGCTAGTACACAAATCA 1929
Query 1969 GAATCATCTTGTGCTTCT 1986
|||||||||||||||||
Sbjct 1930 AAATCATCTTGTGCTTCT 1947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80332326705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5