BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50845.1

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897983 jgi|Araly1|897983|Al_scaffold_0005_1949                    749    0.0  


> Ahg897983 jgi|Araly1|897983|Al_scaffold_0005_1949
Length=465

 Score =  749 bits (405),  Expect = 0.0
 Identities = 445/465 (96%), Gaps = 0/465 (0%)
 Strand=Plus/Plus

Query  1    ATGACTCTGGGACTGATAAACGCGAATCCAGTGGTGCAAGCTAAGAAGGAAGGGCTTGTT  60
            |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct  1    ATGACTCTGGGACTGATAAACGCGAATCCAGTTGTGCAAGCTAAGAAGGAACGGCTTGTT  60

Query  61   CGTAGAGAAGATCAATATAGAGATGATGGTGTTGATCCTCTTGAAATATATGATTATGTA  120
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  61   CGTAGAGAAGATCAATATAGAGATGATGGTGTTGATCCTCTTGAAATCTATGAGTATGTA  120

Query  121  AGAGATATAAGAGATCCAGAACACCCTTATACTTTGGAGCAGCTAAGGGTTGTCTCTGAA  180
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct  121  AGAGATATAAGAGATCCAGAACATCCTTATACTTTGGAGCAGCTAAGTGTTCTCTCTGAA  180

Query  181  GAATCTGTTACTGTCGATGACAAGCTCGATCGCATCCTGATAACGTTTACACCGACGATT  240
            |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  181  GAATCTGTTACTGTCGATGACAAGCTTGATCGCATCCTGATAATGTTTACACCGACGATT  240

Query  241  CAGCATTGTAGTATGGCAAATATAATTGGTCTGTGTCTGAGAGCTAAGCTTAAAGAATGT  300
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  241  CAGCATTGTAGTATGGCAAATATAATTGGTCTGTGTTTGAGAGCTAAGCTTAAAGAATGT  300

Query  301  TTGCAACTTCATTACAAGGTTGATATCAGAGTGTCTCCGGGTTCTCACGCTGATGAAGTT  360
            |||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct  301  TTGCCACTTCATTACAAGGTTGATATCAGAGTGTCACCTGGCTCTCACGCTGATGAAGTT  360

Query  361  TCAGTTAACAAACAACTGAATGATAAAGAAAGAGTGGTGGCTGCATTGGAGAATCCTAAT  420
            ||||| || ||||||||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct  361  TCAGTGAATAAACAACTGAATGATAAAGAAAGGGTGGCGGCCGCATTGGAGAATCCTAAT  420

Query  421  CTCCGTCAGCTCGTGGATGAGTGTATCTACTCCGATGAGATATGA  465
            |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  421  CTCCGTCAGCTCGTGGATGAATGTATCTACTCCGATGAGATATGA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23521839789


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5