BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50850.1
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485437 jgi|Araly1|485437|fgenesh2_kg.5__1429__AT3G50850.1 1098 0.0
> Ahg485437 jgi|Araly1|485437|fgenesh2_kg.5__1429__AT3G50850.1
Length=775
Score = 1098 bits (594), Expect = 0.0
Identities = 723/784 (92%), Gaps = 14/784 (2%)
Strand=Plus/Plus
Query 4 AATCAATGGCTCTCCGAGAAGACGACGACGATGTTAACATCGGAG-AAA--AAGTAGTCG 60
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| || |
Sbjct 1 AATCAATGGCTTTCCGAGAAGACGACGACGATGTTAACATCGGAGAAAACGAAG-AGCCC 59
Query 61 ACGTAGAATCGGAGCTTCAGAAGTACCGGATCAATTCGATCGAATCAACGGTTGTGATTC 120
| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 A-GT-GAATCGGAGCTTCAGATGTACCGGATCAATTCGATCGAATCAACGGTTGTGATTC 117
Query 121 GTCAGTTACCGACACAAGGCATTGCCTTCAAGCTCTGGATACCTGCAACAACTCTCGTCA 180
|||| |||||| ||||||| || ||||||||||| ||| ||||||||||||| |||||||
Sbjct 118 GTCAATTACCGTCACAAGGTATCGCCTTCAAGCTTTGGTTACCTGCAACAACCCTCGTCA 177
Query 181 CGCTTTTAGATAACTACCGTCGTGACCCAAACATTAGTCCTCTCAATCGCACCTTCTCGA 240
||||| | ||||||||||||||||||||||||| ||| || |||| ||||||||||||||
Sbjct 178 CGCTTCTCGATAACTACCGTCGTGACCCAAACACTAGCCCACTCACTCGCACCTTCTCGA 237
Query 241 GTTTTCAATCCGACGGTTCAGATTCTTCTTCTCCGATTAACATCGTCGAGCTCGGATCTG 300
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 GTTTTCAATCCGCCGGTTCAGATTCTTCTTCTCCGATAAACATCGTCGAGCTCGGATCTG 297
Query 301 GAACGGGAATCGTCGGTATCGCAGCGGCTGCGACACTAGGTGCTAATGTCACGGTGACGG 360
|||| |||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 298 GAACTGGAATCGTAGGAATCGCGGCGGCTGCGACGTTAGGTGCTAATGTCACGGTGACGG 357
Query 361 ATCTCCCAAACGTAATCGAGAATCTCAAATTCAACGCCGACGCAAACGCTCAAGTCGTGG 420
|||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct 358 ATCTCCCAAACGTAATCGAGAATCTCAAATTCAACGTCGACGCGAACGCTGAAGTCGTGG 417
Query 421 CTAAG-TTCGGTGGGAAAGTCCACGTGGCGTCTCTTCGTTGGGGCGAAATCGATGACGTG 479
|| || ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 418 CT-AGATTCGGTGGGAAAGTCCATGTGGCGTCTCTTCGTTGGGGTGAAATCAATGACGTG 476
Query 480 GAAAG-TTTGGGTCAAAACGTTGACTTGATTCTAGCGTCTGACGTGGTTTATCACGTTCA 538
| | | ||||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 477 G-AGGTTTTGGGTCAAAACGTTGACTTGATTTTAGCGTCTGACGTGGTTTACCACGAGCG 535
Query 539 TCTTTATGAACCTCTCCTCAAAACGCTGCGTTTTCTGCTCTTAGAAGGATCATCCGAGAG 598
||||||||| |||||||| ||||||||||||||| ||||||||||||| ||| ||||
Sbjct 536 TCTTTATGATCCTCTCCTTAAAACGCTGCGTTTTTTGCTCTTAGAAGG---GTCCAAGAG 592
Query 599 AGTGTTTCTTATGGCTCACCTCAAGAGATGGAAGAAAGAATCGAtttttttCAAGAAAGC 658
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 593 AGTGTTTCTTATGGCTCACCTCAAGAGATGGAAGAAAGAATCAATTTTTTTCAAGAAAGC 652
Query 659 TCGGAGATTCTTCGATGTTGATGTTATACATTGTGATGATCCTCAAGAAGGTGCTAGAAT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 653 TCGGAGATTCTTCGATGTTGATGTTATACATTGTGATGATCCTCAAGAAGGTTCTAGAAT 712
Query 719 CGGAGTTGTAGTTTACCGTTTTGCACCGAAAAATCAAAACCTTTAAGAAGATTTTGTCAA 778
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 713 TGGAGTTGTAGTTTACCGTTTTGCACCGAAAAATCAAA-CCTTTAAGAAGATGATGTCAA 771
Query 779 ATGT 782
||||
Sbjct 772 ATGT 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29964612762
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5