BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50860.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485438 jgi|Araly1|485438|fgenesh2_kg.5__1430__AT3G50860.1 1208 0.0
Ahg485437 jgi|Araly1|485437|fgenesh2_kg.5__1429__AT3G50850.1 202 5e-51
> Ahg485438 jgi|Araly1|485438|fgenesh2_kg.5__1430__AT3G50860.1
Length=946
Score = 1208 bits (654), Expect = 0.0
Identities = 810/885 (92%), Gaps = 11/885 (1%)
Strand=Plus/Plus
Query 116 GTTAACATCGTCGTCGTCTTCTCGGAGAGCCATTGATTGTGACCAATCCTCACGACGGCC 175
|||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 1 GTTAACATCGTCGTCGTCTTCTCGGAAAGCCATTGATT-TGACCAATCCTCTCGACGGCG 59
Query 176 CCGCTACTA-TTTATTAGGGCACTCAAATTTGGTTACACGTGGAGGGTTGTTATTGGTGA 234
||||| || |||| |||| |||||||||||| ||||||||||||| || |||||||| |
Sbjct 60 TCGCTAATATTTTAGTAGGTCACTCAAATTTGATTACACGTGGAGGTTTCTTATTGGTAA 119
Query 235 TGACGTCATCAAATGT-AATTGAAGAAGCCTCTAAGATAGAGAGAGGGTTTGAAAAT-GT 292
|||||||| ||||||| |||||||||| ||||| || |||| |||||||| || || |
Sbjct 120 TGACGTCACCAAATGTAAATTGAAGAA-CCTCTCAGTTAGACAGAGGGTTACAAGATCG- 177
Query 293 GAGATTCAGAGTTTGTCAGCgagagagacgaagaaagaaagagaggagagGTGGAAGATG 352
||| || |||||| |||||||||||| ||| |||||| |||||| || | ||||||
Sbjct 178 GAGTTTGAGAGTTCGTCAGCGAGAGAAACGGAGAAAG--AGAGAGTTGA--AGAAAGATG 233
Query 353 ATTAAGGCAGTGATGATGATGAACACACAAGGCAAACCACGTCTAGCTAAATTCTACGAT 412
|| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 234 ATAAAGGCAGTGATGATGTTGAATACACAAGGCAAACCACGGCTAGCTAAATTCTACGAT 293
Query 413 TACTTGCCTGTGGAGAAGCAGCAGGAGCTTATTCGCGGCGTGTTTTCAGTATTGTGCAGT 472
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 294 TACATGCCTGTAGAGAAGCAGCAGGAGCTAATCCGCGGCGTGTTTTCAGTATTGTGCAGT 353
Query 473 AGACCTGAGAACGTAAGCAATTTTCTGGAGATCGAATCATTGTTTGGACCGGACTCGCGG 532
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||
Sbjct 354 AGACCTGAGAACGTAAGCAATTTTCTGGAGATCGATTCATTGTTTGGCCCGTTCTCTCGG 413
Query 533 CTTGTATACAAGCATTATGCTACACTCTATTTTGTTCTTGTATTTGATGGTTCAGAAAAT 592
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 414 CTTGTATACAAGCACTATGCTACACTCTATTTTGTGCTAGTATTTGATGGTTCAGAAAAT 473
Query 593 GAGCTTGCTATGCTTGATCTCATTCAAGTTCTTGTTGAAACACTGGACAAATGCTTCAGC 652
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 474 GAGCTTGCTATGCTTGATCTCATTCAAGTTCTTGTTGAAACACTTGACAAATGCTTCAGC 533
Query 653 AATGTCTGCGAACTCGACATTGTGTTCAACTACAGCAAGATGCACGCGGTGTTAGATGAG 712
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 534 AATGTCTGCGAACTCGACATTGTGTTCAATTACAGCAAGATGCACGCGGTGGTAGACGAG 593
Query 713 ATTGTATTTGGAGGACAAGTACTGGAAACTAGTTCTGCTGAAGTCATGAAGGCTGTTGAA 772
||||||||||||||||| ||| ||||||||||||| || |||||||| ||||||||||||
Sbjct 594 ATTGTATTTGGAGGACAGGTATTGGAAACTAGTTCCGCCGAAGTCATCAAGGCTGTTGAA 653
Query 773 GAAATATCAAAATTAGAAGCTGCCTCAAATTCGATTTCACTTGTCCCCAAGTCTGTTTCC 832
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 654 GAAATATCAAAATTAGCAGCTGCCTCAAATTCGATTTCACTCGTCCCCAAGTCTGTTTCC 713
Query 833 GGGTGGCGTGGCCGTTAGCTTCGAAAAAACTTGCCTGAATAAGTCAG-AGAACATGTAAC 891
||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||
Sbjct 714 GGGTGGCGTGGCCGTTAGCTTGGAAAAAACTTGCCTGAACAAGTCAACAAAACATGTAAC 773
Query 892 AAAAGCTTATCCAAGTCTTGATCCAAACATGTTTGTTTAATGAGCGTGGAATGTTGCGTG 951
||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 774 AAAAGTTTATCCAAGTCTTGATCCAAACATGTTTGTTTAGTGAGCGTGAAATGTTGCGTG 833
Query 952 GATGGGCTCAGTAGTCTAACGTGGGCCTGTGAATTGTAATTGGGT 996
|||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 834 GATGGGCTCAGTGGTCTAACATGGGCCTGAGAATTGTAATTGGGT 878
Score = 106 bits (57), Expect = 4e-22
Identities = 66/70 (94%), Gaps = 2/70 (3%)
Strand=Plus/Plus
Query 1020 TTTGAGAATGTAACAAAAACGACGAGAAGTTAAGATCTATAAATGAT-AAATGATGTCCA 1078
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 878 TTTGAGAATGTAACAAAAACGACGAGAAGTTAAGATCTATAAACG-TGAAATGATGTCCA 936
Query 1079 AATTCAGATT 1088
|| |||||||
Sbjct 937 AAATCAGATT 946
> Ahg485437 jgi|Araly1|485437|fgenesh2_kg.5__1429__AT3G50850.1
Length=775
Score = 202 bits (109), Expect = 5e-51
Identities = 139/153 (91%), Gaps = 4/153 (3%)
Strand=Plus/Minus
Query 3 AGCTTGAAGGCAATGCCTTGTGTCGGTAACTGACGAATCACAACCGTTGATTCGATCGAA 62
||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 151 AGCTTGAAGGCGATACCTTGTGACGGTAATTGACGAATCACAACCGTTGATTCGATCGAA 92
Query 63 TTGATCCGGTACTTCTGAAGCTCCGATTCTACGT-CG-ACTACTTTTTCTCCGATGTTAA 120
|||||||||||| |||||||||||||||| || | | || | ||||||||||||||||
Sbjct 91 TTGATCCGGTACATCTGAAGCTCCGATTC-AC-TGGGCTCTTCGTTTTCTCCGATGTTAA 34
Query 121 CATCGTCGTCGTCTTCTCGGAGAGCCATTGATT 153
||||||||||||||||||||| |||||||||||
Sbjct 33 CATCGTCGTCGTCTTCTCGGAAAGCCATTGATT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5