BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50870.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897986 jgi|Araly1|897986|Al_scaffold_0005_1952 1410 0.0
> Ahg897986 jgi|Araly1|897986|Al_scaffold_0005_1952
Length=885
Score = 1410 bits (763), Expect = 0.0
Identities = 848/889 (95%), Gaps = 5/889 (1%)
Strand=Plus/Plus
Query 123 ATGATGCAGACTCCGTACACTACTTCAACGCAGGGGCAATATTGTCATTCTTGTGGAATG 182
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGCAGACTCCGTACACAACTTCAACGCAGGGGCAATATTGTCATTCTTGTGGAATG 60
Query 183 TTCCACCACCATAGCCAAAGCTGCTGCTacaacaacaacaacaacTCCAACGCCGGTTCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCACCACCATAGCCAAAGCTGCTGCTACAACAACAACAACAACTCCAACGCCGGTTCT 120
Query 243 TACTCGATGGTCTTCTCCATGCAAAACGGTGGCGTTTTCGAGCAGAACGGTGAGGACTAT 302
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 121 TACTCGATGGTCTTCTCCATGCAAAACGGCGGCGTTTACGAGCAGAACGGCGAGGACTAT 180
Query 303 CATCACTCTTCCTCCCTCGTTGACTGCACTCTCTCTCTTGGAACTCCTTCTACGAGGCTT 362
||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 CATCACTCTTCCTCCGTCGTTGACTGTACTCTGTCTCTTGGAACTCCTTCTACGAGGCTT 240
Query 363 TGTGAGGAAGATGAGAAACGTAGACGCTCTACTTCATCTGGTGCTTCTTCTTGCATCTCC 422
||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 241 TGTGAAGAAGACGAGAAACGTAGACGCTCTACGTCCTCTGGTGCTTCTTCTTGCATCTCC 300
Query 423 AACTTTTGGGACTTGATTCACACCAAAAACAACAACTCCAAAACGGCACCGTACAATAAC 482
||||| ||||||||| ||||||||||||||||| || |||||| ||||||||||||||
Sbjct 301 AACTTCTGGGACTTGCTTCACACCAAAAACAAC---TCAAAAACGACACCGTACAATAAC 357
Query 483 GTTCCTTCTTTCTCCGCTAACAAGCCAAGTCGCGGTTGTTCCG-GTGGTGGTGGTGGCGG 541
||||||||||||||| |||||||||||| |||||||||||||| | ||||||||||| ||
Sbjct 358 GTTCCTTCTTTCTCCACTAACAAGCCAACTCGCGGTTGTTCCGCG-GGTGGTGGTGGAGG 416
Query 542 AGGAGGCGGTGGCGGAGGTGACTCTCTTCTCGCTAGACGCTGTGCCAACTGTGACACTAC 601
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 417 AGGAGGCGGTGGCGGAGGTGATTCTCTTCTCGCCAGACGCTGTGCCAACTGTGACACTAC 476
Query 602 TTCTACTCCACTATGGAGGAATGGTCCTAGAGGCCCTAAGTCCCTATGCAACGCATGCGG 661
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 TTCTACTCCACTATGGAGGAATGGTCCTAGAGGCCCCAAGTCCCTATGCAACGCATGCGG 536
Query 662 CATTCGTTTCAAGAAGGAAGAGAGAAGAACTACTGCGGCTACAGGAAACACCGTCGTCGG 721
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 537 CATTCGTTTCAAGAAGGAAGAGAGAAGAACCACGGCGGCTTCAGGAAACACCGTCGTCGG 596
Query 722 AGCTGCACCGGTTCAAACCGACCAGTACGGGCATCACAACTCTGGCTACAATAATTACCA 781
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 597 AGCTGCACCAGTTCAAACCGACCAGTACGGACATCACAACTCCGGCTACAATAATTACCA 656
Query 782 TGCTGCCACTAATAACAACAATAATAATGGTACTCCGTGGGCTCATCACCACTCGACGCA 841
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 657 TGCTGCCACTGGTAACAACAATAATAATGGTACTCCGTGGGCTCATCATCACTCGACGCA 716
Query 842 GAGGGTTCCGTGTAATTATCCGGCAAATGAGATCAGGTTCATGGATGATTACGGCAGTGG 901
||||||||||||| || |||| || || ||||||||||||||||||||||||||||||||
Sbjct 717 GAGGGTTCCGTGTGATAATCCAGCTAACGAGATCAGGTTCATGGATGATTACGGCAGTGG 776
Query 902 AGTAGCAAACAACGTTGAATCCGACGGTGCTCACGGCGGTGTTCCGTTCCTTTCTTGGAG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGTAGCAAACAACGTTGAATCCGACGGTGCTCACGGCGGTGTTCCGTTCCTTTCTTGGAG 836
Query 962 GCTTAATGTAGCGGATAGGGCAAGTCTTGTCCATGACTTTACCAGATGA 1010
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 837 GCTTAATGTGGCGGATAGGGCAAGTCTTGTCCATGACTTTACCAGATGA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5