BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50880.1
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485440 jgi|Araly1|485440|fgenesh2_kg.5__1432__AT3G50880.1 1173 0.0
> Ahg485440 jgi|Araly1|485440|fgenesh2_kg.5__1432__AT3G50880.1
Length=847
Score = 1173 bits (635), Expect = 0.0
Identities = 779/848 (92%), Gaps = 12/848 (1%)
Strand=Plus/Plus
Query 9 AACTCGGCCGTCGTCATGTCTCTCCGTAAAACCCTAACCGCCGTGAATCAATC-TTCGTT 67
||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 1 AACTCCGCCGTCGTCATGTCTCTCCGTAAAACCCTAACCGCCGTGAATCAA-CATTCGAT 59
Query 68 ACCGCCGGATTCTTTAA-TCTCCGCCGGTAATCTCACTGTTTCAGAGGTCTCTGGTTCAT 126
|||||| ||||| || | | ||||| ||| || | | |||||||| ||||||||| |
Sbjct 60 GTCGCCGGGTTCTTCAATTGT-CGCCGTTAAACTGGCGGATTCAGAGGCCTCTGGTTCTT 118
Query 127 CTTCTAGAATCA-GATTTCGTCCTCGTAAAATCAGGAAAGTTTCGTCAGATCCGTCGCCG 185
|||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 119 CTTCTAGAATCACG-TTTCGACCTCGTAAAATCCGGAAAGTTTCGTCAGATCCGTCGCCG 177
Query 186 AGGATCATTATCACCGCGTCTCCTCCTCTATCAACAAAATCGACTG-TTGATATCGCTCT 244
|| ||||| |||||||||||||||||| ||||||| |||||||| | ||||| |||||||
Sbjct 178 AGAATCATCATCACCGCGTCTCCTCCTTTATCAACCAAATCGAC-GATTGATCTCGCTCT 236
Query 245 ACGTCACTTACAAAGCTCCGATGAACTTCTCGGAGCA-TTAATCACAACGCACAACGATC 303
|||||||||||||||||||| ||||| ||||||| | ||||||||| ||||||||||||
Sbjct 237 CCGTCACTTACAAAGCTCCGACGAACTCCTCGGAG-ACTTAATCACATCGCACAACGATC 295
Query 304 CTCCACTGTTCGACTCAAGTAATACTCCGTTTCTCTCCTTAGCGAGATCAATCCTATACC 363
||||| ||||||| ||||| ||| |||||||||||||| |||||||||||||||| ||||
Sbjct 296 CTCCAGTGTTCGAATCAAGCAATCCTCCGTTTCTCTCCCTAGCGAGATCAATCCTCTACC 355
Query 364 AACAACTCGCGACGAAAGCAGCGAAATGTATCTACGATCGATTCATCTCTCTATTCAACG 423
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 356 AACAACTCGCGACAAAAGCAGCGAAATGTATCTACGATCGATTCATCTCTTTATTCAACG 415
Query 424 GTGGAGAAGCAGGTGTTGTTCCTGAATCTGTGATCTCACTCTCCGCCGTTGATCTTCGTA 483
| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 GCGGAGAATCAGGTGTTGTTCCTGAATCTGTGATCTCTCTCTCCGCCGTTGATCTTCGTA 475
Query 484 AGATCGGTGTCTCCGGGAGAAAAGCTAGTTACCTCCACGATCTAGCTGATAAATACAACA 543
|||| |||||||||||||||||||| |||||||| |||||| ||||||| || |||||||
Sbjct 476 AGATAGGTGTCTCCGGGAGAAAAGCGAGTTACCTTCACGATTTAGCTGAGAAGTACAACA 535
Query 544 ACGGTGTGCTTTCTGATGAATTGATTCTGAAAATGAGTGATGAAGAGTTGATTGATAGGT 603
||||||| || || |||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 536 ACGGTGTCCTCTCCGATGAATTGATTATGAAAATGAGTGATGAAGAGTTGATTGAGAGAT 595
Query 604 TAACTTTGGTTAAAGGAATTGGAGTGTGGACTGTTCATATGTTTATGATCTTCTCGTTGC 663
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 596 TAACATTGGTTAAAGGAATTGGAGTGTGGACTGTTCATATGTTCATGATCTTCTCTTTGC 655
Query 664 ATAGACCTGATGTGTTGCCTGTGGGAGATCTT-GGTGTGAGGAAAGGTGTGAAAGATCTT 722
||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 656 ATAGACCTGATGTTTTGCCTGTGGGAGAT-TTAGGTGTGAGGAAAGGTGTGAAAGATCTT 714
Query 723 TATGGTTTGAAAAATCTTCCAGGTCCATTGCAAATGGAGCAGCTTTGTGAGAAATGGCGT 782
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TATGGTTTGAAAGATCTTCCAGGTCCATTGCAAATGGAGCAGCTTTGTGAGAAATGGCGT 774
Query 783 CCTTATAGGTCTGTTGGTTCATGGTACATGTGGAGACTAATCGAGTCTCGTAAGACCAAA 842
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 775 CCTTATAGGTCCGTTGGTTCATGGTACATGTGGAGACTAATCGAGGCTCGTAAGATCAAA 834
Query 843 TAGCACCT 850
||||||||
Sbjct 835 TAGCACCT 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40829644107
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5