BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50890.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485441 jgi|Araly1|485441|fgenesh2_kg.5__1433__AT3G50890.1 1319 0.0
> Ahg485441 jgi|Araly1|485441|fgenesh2_kg.5__1433__AT3G50890.1
Length=982
Score = 1319 bits (714), Expect = 0.0
Identities = 849/910 (93%), Gaps = 26/910 (3%)
Strand=Plus/Plus
Query 1 GATGGGTGATAGGAAACAAACACACATACGtcatcatcatccttaatttctatttctcct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GATGGGTGATAGGAAACAAACACACATACGTCATCATCACCCTTAATTTCTATTTCTCCT 60
Query 61 tcttcttcatcatcaatatcaatctcatcttcCACTACTCCTCCCCTCTAACAATAAGCA 120
|| |||| |||||||||||||||||||||||||||||| || |||| ||||||| | |
Sbjct 61 TC--CTTCTTCATCAATATCAATCTCATCTTCCACTACT-CTTCCCTATAACAAT-A--A 114
Query 121 GCATCTCTATAATCCCTAAGATTCACAATGGAGCTTGGAGGAAAATGCAATGCAATTACA 180
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 115 GCATCTCTATAATCCGTAAGATTCACAATGGAGCTTGGAGGAAAATGTAATGCAATTACT 174
Query 181 AC-CACAACAATGATCTCAACAGAAGTAAAGCCACATACGGATCCGGAACCAGAAGCCAA 239
| | |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 175 TCTC-CAACAATGATCTCAACAGAAGTAAAGCCACATACGGATCCGG-A--AGAAGCCAA 230
Query 240 ACCCGAATCAGATCCATCCATGGCTTTATTCCCGATCAAGAAAGAAAACCAAAAACCAAA 299
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 231 ACCGGAATCAGATCCATCCATGGCTTTATTCCCGATCAAGAAAGAAAAACAAAAACCGAA 290
Query 300 GACACGTGTCGACCAAGGAGCTAAGTACCGGGAATGTCAGAAGAACCACGCGGCCTCAAC 359
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||
Sbjct 291 GACACGTGTCGACCAAGCAGCTAAGTACCGGGAATGCCAGAAGAACCACGCGGCCTCTAC 350
Query 360 CGGAGGACACGTGGTGGACGGATGCTGCGAGTTCATGGCCGGCGGAGAAGAAGGTACACT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 351 CGGAGGACACGTGGTGGACGGATGCTGCGAGTTCATGGCCGGCGGAGAAGAAGGAACGCT 410
Query 420 CGGTGCTTTAAAATGCGCCGCCTGTAACTGTCACCGGAGCTTCCACCGGAAAGAAGTGTA 479
|| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 411 CGAAGCTGTAAAATGCGCCGCCTGTAACTGTCACCGGAGTTTCCACCGGAAAGAAATGTA 470
Query 480 CGGACACAGGAACAGTAAACAAGATCATCAGCTGATGATAACTCCGGCGTTTTACAGCAG 539
|||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 471 CGGACACATGAGCAGTAAACAAGATCA---GCTGATAATAACTCCGGCGTTTTACAGCAG 527
Query 540 TAACAGCTCGTACAAG-C----CA--C--GTGTAATGCATCCAACGGGTGAGATTGGACG 590
|||||||||||||||| | || | ||| |||||||||||||||||||||||||||
Sbjct 528 TAACAGCTCGTACAAGGCGATGCAGACACGTGGAATGCATCCAACGGGTGAGATTGGACG 587
Query 591 GAGGACTTCATCTTCAAGCGAGGATATGAAGAAGATTCTGAGTCATCGTAACCAAAACGT 650
|||||| || || ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 588 GAGGACATCTTCGTCAAGCGAGGATATGAAGAAGATTCTGAGTCATCGTAACCAGAACAT 647
Query 651 TGATGGGAAAAGTTtgatgatgatgatgatgaggaagaagaagagagtgaggacaaagat 710
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGATGGGAAAGGTTTGATGATGATGATGATGAGGAAGAAGAAGAGAGTGAGGACAAAGAT 707
Query 711 caatgaagaacaaaaggagaagatgaaggaaTTTGCAGAGAGATTAGGGTGGAGGATGCA 770
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 708 CAATGAAGAACAAAAAGAGAAGATGAAGGAATTTGCAGAGAGGTTAGGGTGGAGGATGCA 767
Query 771 GAAGAAAGATGAAGAAGAGATTGATAAGTTTTGTAGGATGGTGAATCTGAGGAGACAAGT 830
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 768 GAAGAAAGATGAAGAAGAGATTGATAAGTTTTGTAGGATGGTGAATCTAAGGAGACAGGT 827
Query 831 TTTTAAGGTTTGGATGCATAATAACAAGCAAGCAATGAAGAGAAACAATAGTAACATTAG 890
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 828 TTTTAAGGTTTGGATGCATAATAACAAGCAAGCAATGAAGAGAAACA---GTAACATTAG 884
Query 891 TGAATAGTTT 900
||||||||||
Sbjct 885 TGAATAGTTT 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5