BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50900.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937942 jgi|Araly1|937942|scaffold_502133.1                        579    1e-164


> Ahg937942 jgi|Araly1|937942|scaffold_502133.1
Length=388

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 365/390 (94%), Gaps = 4/390 (1%)
 Strand=Plus/Plus

Query  81   ttttttCCACACCACATCACACCATGTTTAGAGCCATGAGCACAAGGAAAATCCATGGTG  140
            |||||||||||||| | | |||||||||||||||||||||||| ||||||||||| ||||
Sbjct  1    TTTTTTCCACACCATACCGCACCATGTTTAGAGCCATGAGCACTAGGAAAATCCACGGTG  60

Query  141  GCTACGAAAAGCTCGGCGATGAAGAAGCGAGACTGAAGAGGGTCTCTAGCGTTCCGGCTA  200
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct  61   GCTACGAAAAGCTCGGCGACGAAGAAGCGAGACTGAAGAGGGTCTCTAGCGTTCCAGCGA  120

Query  201  GTGTTTATGGTCATTCAAGAAACCCGGTTCAAGAAG-TGAAGAAGACACCGACAGCGAAA  259
            ||||||||||||| |||||||||||  |||||| || |||||||||||||||| | ||||
Sbjct  121  GTGTTTATGGTCAATCAAGAAACCCTATTCAAG-AGTTGAAGAAGACACCGACGGTGAAA  179

Query  260  CCAACCGGTGGTTCTGTTCATCCTTTGTTTAGTTTCTTTGACGTTCATTTTCAaagaaag  319
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  180  CCAACCGGTGGTTCTGTTCATCCTTTGTTTAGTTTCTTTGACGTTCATTTTCAAAGGAAG  239

Query  320  aagaagaatacggcgaagaagaagaGTTTAGCAACGGCGAAACCAGAGTTTGCTAGGTAT  379
            |||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct  240  AAGAAGAAGACGACGAAGAAAAAGAGTTTAGCGACGGCGAAACCGGAGTTTGCTAGGTAT  299

Query  380  ATGGAGTATGTGAGAG-AAGGAGGTGTGTGGGATCCGAGTTCTAACGCACCAGTGATTCA  438
            ||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||
Sbjct  300  ATGGAGTATGTGA-AGGAAGGAGGTGTGTGGGATCCGAGTTCTAACGCACCTGCGATTCA  358

Query  439  TTACAGATAGATTCGTCAAGGAAAATGAAT  468
            ||||||||||||||||||||||||||||||
Sbjct  359  TTACAGATAGATTCGTCAAGGAAAATGAAT  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5