BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50920.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485445 jgi|Araly1|485445|fgenesh2_kg.5__1437__AT3G50920.1 1363 0.0
> Ahg485445 jgi|Araly1|485445|fgenesh2_kg.5__1437__AT3G50920.1
Length=899
Score = 1363 bits (738), Expect = 0.0
Identities = 849/903 (94%), Gaps = 5/903 (1%)
Strand=Plus/Plus
Query 17 TTAGCGATGGATTTGATACTACGTTGACTTTTATCTTCCTTTTGGAAATGGCAGCGTCGt 76
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAGCGATGGATTTAATACTACGTTGACTTTTATCTTCCTTTTGGAAATGGCAGCGTCGT 60
Query 77 cttctcttcttcttcttcttcACTGTCCCACCTGCAATTTCTACTTTGACTCTTCCTCGT 136
| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 61 C--GTCTTC-TCTTCTTCTTCACTATCCCACCTGCAATTTCTACTTTGGCTCTTCCTCAT 117
Query 137 ACCTTAAAAGATCGAGACTTTCGAGCTATAGTTCGATTATCTCTCGTGGGTCTCCTTTGT 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ACCTTAAAAGATCGAGACTTTCGAGCTATAGTTCGATTATCTCTCGTGGGTCTCCTTTGT 177
Query 197 TTGTCTCTAGCTTTGGATCTATGACCGTTAAAAGATTCTCTAGCAGAGTCGGAAGCAGGA 256
||||| || |||||||||||||||||||||||||||||||||| |||| |||| | || |
Sbjct 178 TTGTCACTGGCTTTGGATCTATGACCGTTAAAAGATTCTCTAGGAGAGACGGAGGTAGCA 237
Query 257 GCAATGACGGTAACGAACAATTTGGAGC-GTTGGAGCAAGAATCTTTCATCAACAACTCA 315
|||||||||||||||||||||||||||| | |||| |||||||||||||||| |||||
Sbjct 238 GCAATGACGGTAACGAACAATTTGGAGCTGC-GGAGAAAGAATCTTTCATCAATAACTCG 296
Query 316 TCGGAGATACGGAAAGACTTGGTCACCGGCGGTGGGATTGAAGCCATTGTTAATCGTCTG 375
||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 297 TCGGAAATCCGGAAAGACTTGGTCGCCGGCGGTGGGATTGAAGCTATTGTTAATCGTCTG 356
Query 376 AGCAAATGGGTTGTGTCTGTTCTATTTGGTTCAATCATTCTTTTGCGACATGATGGTGCA 435
||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||||
Sbjct 357 AGCAAATGGGTTGTGTCTGCTCTGTTTGGTTCAATCATTCTTCTAAGACATGATGGTGCA 416
Query 436 GCCTTGTGGGCAGTCATTGGATCGATTTCGAATTCTGCTCTCTCTGTAGTTCTTAAACGT 495
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 417 GCCTTGTGGGCAGTCATTGGATCGATTTCGAATTCCGCTCTCTCTGTAGTTCTGAAACGT 476
Query 496 ATACTTAACCAAGAGAGGCCTACTACAACATTGCGATCTGATCCCGGGATGCCATCTTCT 555
|||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 477 ATACTTAACCAAGAAAGGCCTGCTACAACATTGCGATCCGATCCCGGGATGCCATCTTCT 536
Query 556 CATGCTCAATCCATTTCTTTCATATCTGTCTTTGCTGTTTTATCCGTTATGGAATGGCTT 615
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 537 CACGCTCAATCTATTTCTTTCATATCTGTATTTGCTGTTTTATCCGTTATGGAATGGCTT 596
Query 616 GGAACCAACGGTGTGTCTTTGTTTCTTAGCGGCTTAATCCTCGCATTGGGTTCATACTTT 675
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 597 GGAACCAACGGAGTGTCTTTGTTTCTTAGCGGCTTAATCCTCGCATTGGGTTCCTACTTT 656
Query 676 ATACGGTTAAGGGTTTCTCAAAAACTGCACACAAGCAGTCAAGTGGTGGTGGGTGCCATT 735
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 657 ATACGGTTAAGGGTTTCTCAGAAACTACACACAAGCAGTCAAGTGGTGGTGGGTGCCATT 716
Query 736 GTTGGTTCTCTTTTCTGCATCTTATGGTACACAATGTGGAATTCGCTTCTTCGTGAAGCC 795
||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 717 GTTGGTTCTGTTTTCTGCATCTTGTGGTACACAATGTGGAACTCACTTCTTCGTGAAGCC 776
Query 796 TTCGAGGCATCTCTATTAGTGCAAATATCTGTATTTCTGTTTGCAGCTACATTTGCGCTA 855
|| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTTGAGTCATCTCTATTAGTCCAAATATCTGTATTTCTGTTTGCAGCTACATTTGCGCTA 836
Query 856 GCTTTCGCAGCGTACGTTGTACTTAACTGGTTCAAAGACGAGAGATAAGCAATACCAAGC 915
||||||| |||||||||||||||||||||||||||||| || |||||||||| || ||||
Sbjct 837 GCTTTCGTAGCGTACGTTGTACTTAACTGGTTCAAAGATGACAGATAAGCAAAACAAAGC 896
Query 916 TTT 918
|||
Sbjct 897 TTT 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5