BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50930.1
Length=2314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937952 jgi|Araly1|937952|scaffold_502143.1 444 2e-123
Ahg937090 jgi|Araly1|937090|scaffold_501281.1 86.1 1e-15
> Ahg937952 jgi|Araly1|937952|scaffold_502143.1
Length=586
Score = 444 bits (240), Expect = 2e-123
Identities = 461/560 (82%), Gaps = 45/560 (8%)
Strand=Plus/Plus
Query 473 TTCTCACCACCGCGGCTTCGGTGGCTGCGACCGCAATGCTAGCTCGATCTTTAGTCCAAG 532
||||||||||||| |||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 1 TTCTCACCACCGCAGCTTCGATGGCTAATACCGCAATGCTAGCTCGATCGGTATTCCAAG 60
Query 533 ATTATTTGCCTGACGAGGTGCATCA-CTACAT-T-T----CCTAT-G--G--A--TTC-C 577
|||||||||||||||||||| | | ||| || | | || | | | | ||| |
Sbjct 61 ATTATTTGCCTGACGAGGTG-AAAATCTATATCTCTGAAGGCTTTCGTAGCTACTTTCGC 119
Query 578 GTTC-CATCTTTG-GTTACTTCT-CATCCCAAATGACGATAATCATCGAAGAATTTGAAG 634
| | | || ||| |||||| | || | |||||||| |||| ||||||||||||||| |
Sbjct 120 GGCCGCTTC-TTGCTTTACTTTTCCA-CTCAAATGACAATAACCATCGAAGAATTTGATG 177
Query 635 GTTTTGCTCACAATGAAGTCTTTGAAGCTGCAGAGGCCTATCTAGCCACCAAGATCTCTC 694
| |||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 178 GATTTGTTCACAATCAAGTCTTTGAAGCTGCAAAGGCCTATCTAGCCACCAAAATCTCTC 237
Query 695 CTTCTAACAAAAGAATCAAAGTGAGTAAACATGAGAAAGAAAACAA-CTACAATGTCACC 753
|||||||||||| ||| |||||||||||||| |||||||||| || |||||| ||||||
Sbjct 238 CTTCTAACAAAAAAATTAAAGTGAGTAAACACCAGAAAGAAAA-AAGCTACAACGTCACC 296
Query 754 GTGGAGCGTGACGAAGAAGTTGTTGACACCTACAATGGCGTCAAATTCCAGTGGATCCTC 813
||||| ||||| || |||||||| ||||| | |||||||||| | |||| |||| |||||
Sbjct 297 GTGGAACGTGATGAGGAAGTTGTGGACACTTTCAATGGCGTCCAGTTCCGGTGGGTCCTC 356
Query 814 CATTGTCGTCATGTCGAGTCCAAGCACTTCCACAACCCACGGGATCTAAACTCCACACTG 873
| |||| | ||||| ||||||||| | | || || || || ||| | ||
Sbjct 357 CGTTGTTGCCATGTTGAGTCCAAG-A-AT-CA-AA---AC----TCCAAA--GC-CA--- 399
Query 874 AGATCTGAGGTCCGATCATTCGAACTCAACTTCCACAAGA-AATTCAAAGACGTAGCTCT 932
| ||| ||||||||||||||||| |||||||||||||| | ||||||||||| |||||||
Sbjct 400 A-ATCAGAGGTCCGATCATTCGAGCTCAACTTCCACAA-ACAATTCAAAGACATAGCTCT 457
Query 933 TGAATCTTACTTGCCATTCATGGTGAAAAGAGCCACGTTGATGAAGCAAGAGAAGAAAAC 992
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 458 TGAATCTTACTTGCCATTCATGGTGAAAAGAGCAACGTTGATGAAGCAAGAGAAGAAAA- 516
Query 993 A-CTCAAGATCTTCACTCTC 1011
| || |||||||||||||||
Sbjct 517 AGCTTAAGATCTTCACTCTC 536
> Ahg937090 jgi|Araly1|937090|scaffold_501281.1
Length=192
Score = 86.1 bits (46), Expect = 1e-15
Identities = 88/108 (81%), Gaps = 3/108 (3%)
Strand=Plus/Plus
Query 1383 ATTGAAAGATAGGACTAGCGATGAACCTCCTCGGGAATCTGACGATA-TAGAAGATCCAC 1441
||||||||||| || || |||||||| | | | || | || || | | | || ||||
Sbjct 1 ATTGAAAGATAAGATTATTGATGAACCACTTTGCGAGGCAGAAGAAACTTG-TGACCCAC 59
Query 1442 GGTA-TAAAAAAGTGACACTCTCTGGACTGTTGAATTTCATAGATGGT 1488
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGTACCAAAAAAGTGACACTCTCTGGACTGTTGAATTTCATAGATGGT 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87150480560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5