BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50930.1 Length=2314 Score E Sequences producing significant alignments: (Bits) Value Ahg937952 jgi|Araly1|937952|scaffold_502143.1 444 2e-123 Ahg937090 jgi|Araly1|937090|scaffold_501281.1 86.1 1e-15 > Ahg937952 jgi|Araly1|937952|scaffold_502143.1 Length=586 Score = 444 bits (240), Expect = 2e-123 Identities = 461/560 (82%), Gaps = 45/560 (8%) Strand=Plus/Plus Query 473 TTCTCACCACCGCGGCTTCGGTGGCTGCGACCGCAATGCTAGCTCGATCTTTAGTCCAAG 532 ||||||||||||| |||||| ||||| |||||||||||||||||||| || |||||| Sbjct 1 TTCTCACCACCGCAGCTTCGATGGCTAATACCGCAATGCTAGCTCGATCGGTATTCCAAG 60 Query 533 ATTATTTGCCTGACGAGGTGCATCA-CTACAT-T-T----CCTAT-G--G--A--TTC-C 577 |||||||||||||||||||| | | ||| || | | || | | | | ||| | Sbjct 61 ATTATTTGCCTGACGAGGTG-AAAATCTATATCTCTGAAGGCTTTCGTAGCTACTTTCGC 119 Query 578 GTTC-CATCTTTG-GTTACTTCT-CATCCCAAATGACGATAATCATCGAAGAATTTGAAG 634 | | | || ||| |||||| | || | |||||||| |||| ||||||||||||||| | Sbjct 120 GGCCGCTTC-TTGCTTTACTTTTCCA-CTCAAATGACAATAACCATCGAAGAATTTGATG 177 Query 635 GTTTTGCTCACAATGAAGTCTTTGAAGCTGCAGAGGCCTATCTAGCCACCAAGATCTCTC 694 | |||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 178 GATTTGTTCACAATCAAGTCTTTGAAGCTGCAAAGGCCTATCTAGCCACCAAAATCTCTC 237 Query 695 CTTCTAACAAAAGAATCAAAGTGAGTAAACATGAGAAAGAAAACAA-CTACAATGTCACC 753 |||||||||||| ||| |||||||||||||| |||||||||| || |||||| |||||| Sbjct 238 CTTCTAACAAAAAAATTAAAGTGAGTAAACACCAGAAAGAAAA-AAGCTACAACGTCACC 296 Query 754 GTGGAGCGTGACGAAGAAGTTGTTGACACCTACAATGGCGTCAAATTCCAGTGGATCCTC 813 ||||| ||||| || |||||||| ||||| | |||||||||| | |||| |||| ||||| Sbjct 297 GTGGAACGTGATGAGGAAGTTGTGGACACTTTCAATGGCGTCCAGTTCCGGTGGGTCCTC 356 Query 814 CATTGTCGTCATGTCGAGTCCAAGCACTTCCACAACCCACGGGATCTAAACTCCACACTG 873 | |||| | ||||| ||||||||| | | || || || || ||| | || Sbjct 357 CGTTGTTGCCATGTTGAGTCCAAG-A-AT-CA-AA---AC----TCCAAA--GC-CA--- 399 Query 874 AGATCTGAGGTCCGATCATTCGAACTCAACTTCCACAAGA-AATTCAAAGACGTAGCTCT 932 | ||| ||||||||||||||||| |||||||||||||| | ||||||||||| ||||||| Sbjct 400 A-ATCAGAGGTCCGATCATTCGAGCTCAACTTCCACAA-ACAATTCAAAGACATAGCTCT 457 Query 933 TGAATCTTACTTGCCATTCATGGTGAAAAGAGCCACGTTGATGAAGCAAGAGAAGAAAAC 992 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 458 TGAATCTTACTTGCCATTCATGGTGAAAAGAGCAACGTTGATGAAGCAAGAGAAGAAAA- 516 Query 993 A-CTCAAGATCTTCACTCTC 1011 | || ||||||||||||||| Sbjct 517 AGCTTAAGATCTTCACTCTC 536 > Ahg937090 jgi|Araly1|937090|scaffold_501281.1 Length=192 Score = 86.1 bits (46), Expect = 1e-15 Identities = 88/108 (81%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 1383 ATTGAAAGATAGGACTAGCGATGAACCTCCTCGGGAATCTGACGATA-TAGAAGATCCAC 1441 ||||||||||| || || |||||||| | | | || | || || | | | || |||| Sbjct 1 ATTGAAAGATAAGATTATTGATGAACCACTTTGCGAGGCAGAAGAAACTTG-TGACCCAC 59 Query 1442 GGTA-TAAAAAAGTGACACTCTCTGGACTGTTGAATTTCATAGATGGT 1488 |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GGTACCAAAAAAGTGACACTCTCTGGACTGTTGAATTTCATAGATGGT 107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87150480560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5