BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50960.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323657 jgi|Araly1|323657|fgenesh1_pm.C_scaffold_5001201 893 0.0
Ahg496965 jgi|Araly1|496965|fgenesh2_kg.8__2781__AT5G66410.1 689 0.0
Ahg485448 jgi|Araly1|485448|fgenesh2_kg.5__1440__AT3G50950.1 180 2e-44
> Ahg323657 jgi|Araly1|323657|fgenesh1_pm.C_scaffold_5001201
Length=669
Score = 893 bits (483), Expect = 0.0
Identities = 613/670 (91%), Gaps = 32/670 (5%)
Strand=Plus/Plus
Query 188 ATGGCGGCTGCTGCAAGAAATTATCAAAAGGAAGTTCTTGCAAATGAGAAGGCGCAAGGA 247
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGGCTGCTGCAAGAAATTATCAAAAGGAAGTTCTTGCCAATGAGAAGGCGCAAGGA 60
Query 248 TCAAATCCTGTTAATGAAGAGGTTGATCTTGATGAACTTATGGATGATCCAGAGCTAGAA 307
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGAATCCTGTTAATGAAGAGGTTGATCTTGATGAACTTATGGATGATCCAGAGCTAGAA 120
Query 308 AGATTGCACGCAGATAGGATTGCAGCACTAAAGAGAGAGGTTGAGAAGAGAGAATCGTTT 367
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 121 AGGTTGCACGCAGATAGGATTGCAGCACTAAAGAGAGAAGTTGAGAAGAGAGAAGCGTTT 180
Query 368 AAAAGACAAGGGCATGGTGAATATCGAGAGGTGAGTGAAGGAGATTTCTTGGGTGAAGTC 427
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 181 AAAAGACAAGGACATGGTGAATATCGAGAGGTAAGCGAAGGAGATTTCTTGGGTGAAGTC 240
Query 428 ACCAGGAGTGAGAAAGTGATATGTCATTTCTACCATAAGGAATTTTACCGGTGCAAGATT 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCAGGAGTGAGAAAGTGATATGTCATTTCTACCATAAGGAATTTTACCGGTGCAAGATT 300
Query 488 ATGGACAAGCATCTGAAAACTCTTGCACCTAGACATGTGGACACAAAGTTCATTAAAGTG 547
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGACAAGCATCTGAAGACTCTTGCACCTAGACATGTGGACACAAAGTTCATTAAAGTG 360
Query 548 GACGCAGAGAATGCTCCTTTCTTTGTCACGAAGCTTGCAATAAAGACTTTGCCTTGCGTT 607
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GACGCAGAGAATGCTCCTTTCTTTGTCACGAAGCTTGCAATAAAGACGTTGCCTTGCGTT 420
Query 608 GTGCTTTTCAGCAAGGGAGTTGCGATGGATAGGCTAGTTGGGTTCCAGGATCTGGGAACC 667
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 421 GTGCTTTTCAGCAAGGGAATCGCGATGGATAGGCTAGTTGGGTTCCAGGATCTGGGCACT 480
Query 668 AAGGACGATTTCACAACGAATAAACTAGAGAACGTTCT-T--------------CTTAAA 712
|||||||||||||| |||||||||||||||||||| || | ||||||
Sbjct 481 AAGGACGATTTCACCACGAATAAACTAGAGAACGTACTGTTAAGAGAATTTTTGCTTAAA 540
Query 713 AAGGG-AA-TGCT----CAGCAA-GA--AG-AAGAA-A-GAG-GAAGATGATGA--A-GA 756
|| | || | || ||| || | || ||||| | || || || ||||| | ||
Sbjct 541 GAGTGCAAAT-CTTTATCAGGAATGCTCAGCAAGAAGAAGAAAGAGGAAGATGATGAAGA 599
Query 757 CGCCGAATATCAAGAGAGCATACGGAGGTCTGTTAGGTCTTCAGAGAATCTGGACTCTGA 816
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 CGCTGAATATCAAGAGAGCATACGGCGGTCTGTTAGGTCTTCAGAGAATCTGGACTCTGA 659
Query 817 TTCTGACTGA 826
||||||||||
Sbjct 660 TTCTGACTGA 669
> Ahg496965 jgi|Araly1|496965|fgenesh2_kg.8__2781__AT5G66410.1
Length=904
Score = 689 bits (373), Expect = 0.0
Identities = 599/708 (85%), Gaps = 16/708 (2%)
Strand=Plus/Plus
Query 129 AAAAGATGGATCCAGATGCAGTCAAATCGACTCTCTCGAATCTAGCATTTGGAAATGTAA 188
||||||||||||| ||||| || || ||||| || |||||||| ||||| || ||||||
Sbjct 18 AAAAGATGGATCCGGATGCGGTGAAGTCGACCCTTTCGAATCTGGCATTCGGGAATGTAT 77
Query 189 TGGCGGCTGCTGCAAGAAATTATCAAAAGGAAGTTCTTGCAAATGAGAAGGCGCAAGGAT 248
||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 78 TGGCGGCAGCTGCTCGAGATTATAAAAAGGAAGTTCTTGCAAATGAGAAGGCGCAAGGAT 137
Query 249 CAA-ATCCTGTTAATGAAGAGGTTGATCTTGATGAACTT-ATGGATGATCCAGAGCTAGA 306
||| | ||||| || || || ||||||||||| || || ||||||||||||||||||||
Sbjct 138 CAAGA-CCTGTCAACGAGGAAGTTGATCTTGACGAT-TTGATGGATGATCCAGAGCTAGA 195
Query 307 -AAGATTGCACGCAGATAGGATTGCAGCACTAAAGAGAGAGGTTGAGAAGAGAGAATCGT 365
||| |||||||||||||||||||||||||| |||||||| || || ||||||||| | |
Sbjct 196 GAAG-TTGCACGCAGATAGGATTGCAGCACTCAAGAGAGAAGTGGAAAAGAGAGAAGC-T 253
Query 366 TT-AAAAGACAAGGGCATGGTGAATATCGAGAGGTGAGTGAAGGAGATTTCTTGGGTGAA 424
|| ||||| ||||| ||||||||||| ||||| || || ||||| || |||||||| |||
Sbjct 254 TTCAAAAGGCAAGGACATGGTGAATACCGAGAAGTTAGCGAAGGTGACTTCTTGGGAGAA 313
Query 425 GTCACCAGGAGTGAGAAAGTGATATGTCATTTCTACCATAAGGAATTTTACCGGTGCAAG 484
||||| |||| ||| ||||| |||||||| |||||||| |||||||| || || ||||||
Sbjct 314 GTCACAAGGACTGACAAAGTCATATGTCACTTCTACCACAAGGAATTCTATCGCTGCAAG 373
Query 485 ATTATGGACAAGCATCTGAAAACTCTTGCACCTAGACATGTGGACACAAAGTTCATTAA- 543
||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||
Sbjct 374 ATTATGGACAAGCATTTGAAGACCCTTGCTCCTAGACATGTGGACACAAAGTTCATTAAG 433
Query 544 AGTGGACGCAGAGAATGCTCCTTTCTTTGTCACGAAGCTTGCAATAAAGACTTTGCCTTG 603
| ||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct 434 A-TGGACGCTGAGAATGCTCCCTTCTTCGTCACCAAGCTTGCAATCAAGACTTTGCCTTG 492
Query 604 CGTTGTGCTTTTCAGCAAGGGAGTTGCGATGGATAGGCTAGTTGGGTTCCAGGATCTGGG 663
||| | ||||| ||||||||| | |||||||||||||| || || || |||||||| ||
Sbjct 493 TGTTATCCTTTTTAGCAAGGGAATCGCGATGGATAGGCTTGTCGGTTTTCAGGATCTAGG 552
Query 664 AACCAAGGACGATTTCACAACGAATAAA-CTAGAGAACGTTCTTCTTAA-AAAGGGAATG 721
||||||||||||| | || ||| || || |||||| |||| | || ||||| ||||
Sbjct 553 TGCCAAGGACGATTTTTCCAC-AATGAAGCTGGAGAACCTTCTGGTCAAGAAAGG-AATG 610
Query 722 CTCAGCAAGAAGAAGAAA-GAGGAAGATGATGAAGACGCCGAATATCAAGAGAGCATACG 780
|| || |||||| |||| ||||||||||| ||||| ||| |||||||| ||||||||
Sbjct 611 CTTAGTGAGAAGA-GAAAAGAGGAAGATGAGGAAGATTACGAGTATCAAGAAAGCATACG 669
Query 781 GAGGTCTGTTAGGTCTTCAGAGAATCTGGACTCTGATTCTGACTGATC 828
|||| ||||||||||||| |||| | |||||||||| || |||||
Sbjct 670 TCGGTCCGTTAGGTCTTCAGCGAATGTCAACTCTGATTCAGATTGATC 717
> Ahg485448 jgi|Araly1|485448|fgenesh2_kg.5__1440__AT3G50950.1
Length=2848
Score = 180 bits (97), Expect = 2e-44
Identities = 102/104 (98%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 918 GCGATATGAAATCCAAACGGTCAAA-GCAACATTACATTGTATCAAGGTATATGTAATAC 976
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2848 GCGATATGAAATCCAAACGGTCAAATGCAACATTACATTGTATCAAGGTATATGTAATAC 2789
Query 977 ACCAACTTATTGTCACTGTTTAATAAACATTGATCTAGTTGCTT 1020
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2788 ACCAACTTATTGTCACTGATTAATAAACATTGATCTAGTTGCTT 2745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5