BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G50980.1

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937958 jgi|Araly1|937958|scaffold_502149.1                        662    0.0  


> Ahg937958 jgi|Araly1|937958|scaffold_502149.1
Length=424

 Score =  662 bits (358),  Expect = 0.0
 Identities = 402/423 (95%), Gaps = 3/423 (1%)
 Strand=Plus/Plus

Query  92   TTCAATTGTAAAAGGAATATGGAGTCTTACCAAAACCAGTCCGGAGCGCAGCAGACTCAC  151
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  3    TTCAATTGTAAAAGGAAGATGGAGTCTTACCAAAACCAGTCCGGAGCGCAGCAGACTCAC  62

Query  152  CAACAGCTTGACCAATTTGGAAATCCATTTCCAGCCACCACCGGAGCCTATGGAACTGCC  211
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct  63   CAACAGCTTGACCAATTTGGAATTCCATTTCCAGCCACCACCGGAGCCTATGGAACTGCA  122

Query  212  GGTGGAGCTCCAGCCGTGGCTGAAGGTGGTGGTTTAAGTGGCATGCTTCACCGTTCTGGG  271
            ||||||||||| | | |||| |||||||||||||| |||||||||||||||||||| |||
Sbjct  123  GGTGGAGCTCCGGTCATGGCGGAAGGTGGTGGTTTGAGTGGCATGCTTCACCGTTCGGGG  182

Query  272  AGTAGCTCTAGCTCTAGCTCGGAGGATGATGGACTAGGTGGAAGGAGGAGGAAGAAGAAG  331
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  183  AGTAGCTCTAGTTCTAGCTCGGAGGAGGATGGACTAGGTGGAAGGAGGAGGAAGAAGAAG  242

Query  332  GGAATAACGGAGAAGATTAAAGAGAAGCTGCCGGGTCATCACGACTCCAACAAGACTTCT  391
            |||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||   ||
Sbjct  243  GGAATAACCGAGAAGATTAAAGAGAAGCTGTCGGGCCATCACGAGTCCAACAAGA---CT  299

Query  392  TCTTTAGGTTCTACAACGACGGCCTATGATACCGGCACCGTTCACCACGAGAAGAAAGGC  451
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TCTTTAGGTTCTACCACGACGGCCTATGATACCGGCACCGTTCACCACGAGAAGAAAGGC  359

Query  452  ATGATGGAGAAGATCAAAGAGAAGCTTCCGGGTGGTCATCATTAGTTTCATTTTAATTAA  511
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  360  ATGATGGAGAAGATCAAAGAGAAGCTTCCGGGTGGTCATTATTAGTTTCATTTTAATCAA  419

Query  512  CTT  514
            |||
Sbjct  420  CTT  422



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23445593955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5