BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50980.1 Length=640 Score E Sequences producing significant alignments: (Bits) Value Ahg937958 jgi|Araly1|937958|scaffold_502149.1 662 0.0 > Ahg937958 jgi|Araly1|937958|scaffold_502149.1 Length=424 Score = 662 bits (358), Expect = 0.0 Identities = 402/423 (95%), Gaps = 3/423 (1%) Strand=Plus/Plus Query 92 TTCAATTGTAAAAGGAATATGGAGTCTTACCAAAACCAGTCCGGAGCGCAGCAGACTCAC 151 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3 TTCAATTGTAAAAGGAAGATGGAGTCTTACCAAAACCAGTCCGGAGCGCAGCAGACTCAC 62 Query 152 CAACAGCTTGACCAATTTGGAAATCCATTTCCAGCCACCACCGGAGCCTATGGAACTGCC 211 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 63 CAACAGCTTGACCAATTTGGAATTCCATTTCCAGCCACCACCGGAGCCTATGGAACTGCA 122 Query 212 GGTGGAGCTCCAGCCGTGGCTGAAGGTGGTGGTTTAAGTGGCATGCTTCACCGTTCTGGG 271 ||||||||||| | | |||| |||||||||||||| |||||||||||||||||||| ||| Sbjct 123 GGTGGAGCTCCGGTCATGGCGGAAGGTGGTGGTTTGAGTGGCATGCTTCACCGTTCGGGG 182 Query 272 AGTAGCTCTAGCTCTAGCTCGGAGGATGATGGACTAGGTGGAAGGAGGAGGAAGAAGAAG 331 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 183 AGTAGCTCTAGTTCTAGCTCGGAGGAGGATGGACTAGGTGGAAGGAGGAGGAAGAAGAAG 242 Query 332 GGAATAACGGAGAAGATTAAAGAGAAGCTGCCGGGTCATCACGACTCCAACAAGACTTCT 391 |||||||| ||||||||||||||||||||| |||| |||||||| |||||||||| || Sbjct 243 GGAATAACCGAGAAGATTAAAGAGAAGCTGTCGGGCCATCACGAGTCCAACAAGA---CT 299 Query 392 TCTTTAGGTTCTACAACGACGGCCTATGATACCGGCACCGTTCACCACGAGAAGAAAGGC 451 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCTTTAGGTTCTACCACGACGGCCTATGATACCGGCACCGTTCACCACGAGAAGAAAGGC 359 Query 452 ATGATGGAGAAGATCAAAGAGAAGCTTCCGGGTGGTCATCATTAGTTTCATTTTAATTAA 511 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 360 ATGATGGAGAAGATCAAAGAGAAGCTTCCGGGTGGTCATTATTAGTTTCATTTTAATCAA 419 Query 512 CTT 514 ||| Sbjct 420 CTT 422 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23445593955 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5