BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50990.1 Length=1261 Score E Sequences producing significant alignments: (Bits) Value Ahg898002 jgi|Araly1|898002|Al_scaffold_0005_1968 1598 0.0 Ahg476012 jgi|Araly1|476012|fgenesh2_kg.2__1142__AT1G68850.1 65.8 8e-10 > Ahg898002 jgi|Araly1|898002|Al_scaffold_0005_1968 Length=1026 Score = 1598 bits (865), Expect = 0.0 Identities = 984/1039 (95%), Gaps = 17/1039 (2%) Strand=Plus/Plus Query 21 ATGAATACAAAAACGGTGAAGTCAATGGCGGGCATTGTTCTCT-CTCAAATCTCACTTGT 79 ||||||||||||| |||||||||||| || ||||||| | | |||||| ||||||| Sbjct 1 ATGAATACAAAAATGGTGAAGTCAAT----GG--TTGTTCT-TGCCCAAATCCCACTTGT 53 Query 80 TGCGCTGTTTCCTCTATGTATTTGTTATCAAACACATCAAAGCACGAGCTCTGTAGCCTC 139 ||||||||||||||| ||||| ||||||||||||||| |||||||||| | | | ||||| Sbjct 54 TGCGCTGTTTCCTCTTTGTATATGTTATCAAACACATGAAAGCACGAG-T-TCT-GCCTC 110 Query 140 TCTATCCCCTCAGTTTTACGAGAACTCGTGCCCAAACGCACAAGCCATCGTTCAATCTTA 199 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 111 TCTATCCCCTCAGTTTTACGACAACTCGTGCCCAAACGCACAAGCCATCGTTCAATCTTA 170 Query 200 CGTCGCCAATGCATACTT-CAATGACCCTCGCATGGCTGCCTCAATTCTTAGGCTCCATT 258 ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 171 CGTCGCCAAAGCATA-TTCCAATGACCCTCGCATGGCTGCCTCAATTCTTAGGCTCCATT 229 Query 259 TCCACGACTGTTTCGTCAATGGATGTGATGCTTCCGTACTATTGGACAGTAGTGGAACCA 318 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 TCCATGACTGTTTCGTTAATGGATGTGATGCTTCCGTACTATTGGACAGTAGTGGAACCA 289 Query 319 TGGAAAGCGAGAAACGATCAAATGCAAATCGAGACTCTGCTCGAGGGTTCGAAGTCATTG 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 TGGAAAGCGAGAAACGATCAAATGCAAATCGAGACTCTGCTCGAGGGTTCGAAGTCATTG 349 Query 379 ACGAGATCAAGTCTGCCTTGGAAAATGAATGTCCTGAAACAGTTTCTTGCGCCGATCTAT 438 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 350 ACGAGATCAAGTCGGCCTTGGAAAATGAATGTCCTGAAACAGTTTCTTGCGCCGATCAAT 409 Query 439 TGGCTCTCGTTGCTAGAGACTCTATTGTTATTTGTGGTGGACCTAGTTGGGAAGTATATC 498 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 410 TGGCTCTCGTTGCTAGAGACTCCATTGTTATTTGTGGTGGACCTAGTTGGGAAGTAAATC 469 Query 499 TTGGAAGAAGAGATGCAAGAGAAGCAAGCTTGATTGGTTCCATGGAAAACATTCCTTCTC 558 ||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||| Sbjct 470 TTGGAAGAAGAGATGCAAGGGAAGCAAGTTTGAGTGGTTCCATGGAGAACATTCCTTCTC 529 Query 559 CCGAGTCCACGTTACAAACAATTCTCA-CTATGTTCAACTTTCAAGGACTTGATCTCACC 617 ||||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||| Sbjct 530 CCGAGTCCACGTTACAAACAATTGTCAAC-ATGTTCAACCTTCAAGGACTTGATCTCACC 588 Query 618 GATCTTGTTGCCCTCTTAGGGAGTCACACGATAGGAAACTCAAGGTGTATTGGTTTCCGA 677 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 589 GATCTTGTTGCCCTCTTAGGGAGTCACACGATAGGAAACTCGAGGTGTATTGGTTTCCGA 648 Query 678 CAAAGGTTATACAACCATACTGGAAACAACGATCCCGACCAGACTTTGAATCAAGACTAC 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 CAAAGGTTATACAACCATACTGGAAACAACGATCCCGACCAGACTTTGAATCAAGACTAC 708 Query 738 GCCTCTATGTTGCAGCAGGGATGTCCGATTTCGGGCAACGACCAGAACCTCTTTAATCTT 797 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 709 GCCTCTATGTTGCAGCAGGGATGTCCGATTTCGGGCAATGACCAGAACCTCTTTAATCTT 768 Query 798 GACTATGTGACGCCGACTAAGTTTGACAATTACTACTACAAGAATCTTGTGAACTTTAGA 857 ||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 769 GACTAAGTGACGCCAACTAAGTTTGACAATTACTACTTCAAGAATCTGGTGAACTTTAGA 828 Query 858 GGACTCTTGAGTTCTGATGAGATATTGTTCACGCAAAGCA-TAGAGACTATGGAGATGGT 916 ||||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||| Sbjct 829 GGACTCTTGAGTTCTGATGAGATTTTGTTCACGCAAAGCAGT-GAGACCATGGAGATGGT 887 Query 917 CAAGTATTACGCGGAGAATGAGGGAGCGTTCTTTGAGCAGTTTGCGAAGTCGATGGTGAA 976 ||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| Sbjct 888 CAAGTTTTACGCGGAGAATGAGGAAGCCTTCTTTGAGCAGTTCGCGAAGTCGATTGTGAA 947 Query 977 GATGGGGAACATCTCACCGTTGACGGGGACGGATGGTGAGATCCGGAGGATATGCCGGAG 1036 |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| Sbjct 948 GATGGGGAACATCTCACCGTTGACGGGGACCGATGGTGAGATCAGGAGGATCTGCCGGAG 1007 Query 1037 GGTTAACCATGATGTTTGA 1055 ||||||||||||| ||||| Sbjct 1008 GGTTAACCATGATTTTTGA 1026 > Ahg476012 jgi|Araly1|476012|fgenesh2_kg.2__1142__AT1G68850.1 Length=1189 Score = 65.8 bits (35), Expect = 8e-10 Identities = 42/45 (93%), Gaps = 2/45 (4%) Strand=Plus/Plus Query 945 TTCTTTGAGCAGTT-TGCGAAGTCGATGGTGAAGATGGGGAACAT 988 ||||||||||| || | |||||||||||||||||||||||||||| Sbjct 947 TTCTTTGAGCAATTCT-CGAAGTCGATGGTGAAGATGGGGAACAT 990 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47119925412 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5