BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50990.1
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898002 jgi|Araly1|898002|Al_scaffold_0005_1968 1598 0.0
Ahg476012 jgi|Araly1|476012|fgenesh2_kg.2__1142__AT1G68850.1 65.8 8e-10
> Ahg898002 jgi|Araly1|898002|Al_scaffold_0005_1968
Length=1026
Score = 1598 bits (865), Expect = 0.0
Identities = 984/1039 (95%), Gaps = 17/1039 (2%)
Strand=Plus/Plus
Query 21 ATGAATACAAAAACGGTGAAGTCAATGGCGGGCATTGTTCTCT-CTCAAATCTCACTTGT 79
||||||||||||| |||||||||||| || ||||||| | | |||||| |||||||
Sbjct 1 ATGAATACAAAAATGGTGAAGTCAAT----GG--TTGTTCT-TGCCCAAATCCCACTTGT 53
Query 80 TGCGCTGTTTCCTCTATGTATTTGTTATCAAACACATCAAAGCACGAGCTCTGTAGCCTC 139
||||||||||||||| ||||| ||||||||||||||| |||||||||| | | | |||||
Sbjct 54 TGCGCTGTTTCCTCTTTGTATATGTTATCAAACACATGAAAGCACGAG-T-TCT-GCCTC 110
Query 140 TCTATCCCCTCAGTTTTACGAGAACTCGTGCCCAAACGCACAAGCCATCGTTCAATCTTA 199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 111 TCTATCCCCTCAGTTTTACGACAACTCGTGCCCAAACGCACAAGCCATCGTTCAATCTTA 170
Query 200 CGTCGCCAATGCATACTT-CAATGACCCTCGCATGGCTGCCTCAATTCTTAGGCTCCATT 258
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CGTCGCCAAAGCATA-TTCCAATGACCCTCGCATGGCTGCCTCAATTCTTAGGCTCCATT 229
Query 259 TCCACGACTGTTTCGTCAATGGATGTGATGCTTCCGTACTATTGGACAGTAGTGGAACCA 318
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TCCATGACTGTTTCGTTAATGGATGTGATGCTTCCGTACTATTGGACAGTAGTGGAACCA 289
Query 319 TGGAAAGCGAGAAACGATCAAATGCAAATCGAGACTCTGCTCGAGGGTTCGAAGTCATTG 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGGAAAGCGAGAAACGATCAAATGCAAATCGAGACTCTGCTCGAGGGTTCGAAGTCATTG 349
Query 379 ACGAGATCAAGTCTGCCTTGGAAAATGAATGTCCTGAAACAGTTTCTTGCGCCGATCTAT 438
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 350 ACGAGATCAAGTCGGCCTTGGAAAATGAATGTCCTGAAACAGTTTCTTGCGCCGATCAAT 409
Query 439 TGGCTCTCGTTGCTAGAGACTCTATTGTTATTTGTGGTGGACCTAGTTGGGAAGTATATC 498
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 410 TGGCTCTCGTTGCTAGAGACTCCATTGTTATTTGTGGTGGACCTAGTTGGGAAGTAAATC 469
Query 499 TTGGAAGAAGAGATGCAAGAGAAGCAAGCTTGATTGGTTCCATGGAAAACATTCCTTCTC 558
||||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||||
Sbjct 470 TTGGAAGAAGAGATGCAAGGGAAGCAAGTTTGAGTGGTTCCATGGAGAACATTCCTTCTC 529
Query 559 CCGAGTCCACGTTACAAACAATTCTCA-CTATGTTCAACTTTCAAGGACTTGATCTCACC 617
||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||
Sbjct 530 CCGAGTCCACGTTACAAACAATTGTCAAC-ATGTTCAACCTTCAAGGACTTGATCTCACC 588
Query 618 GATCTTGTTGCCCTCTTAGGGAGTCACACGATAGGAAACTCAAGGTGTATTGGTTTCCGA 677
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 589 GATCTTGTTGCCCTCTTAGGGAGTCACACGATAGGAAACTCGAGGTGTATTGGTTTCCGA 648
Query 678 CAAAGGTTATACAACCATACTGGAAACAACGATCCCGACCAGACTTTGAATCAAGACTAC 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CAAAGGTTATACAACCATACTGGAAACAACGATCCCGACCAGACTTTGAATCAAGACTAC 708
Query 738 GCCTCTATGTTGCAGCAGGGATGTCCGATTTCGGGCAACGACCAGAACCTCTTTAATCTT 797
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 709 GCCTCTATGTTGCAGCAGGGATGTCCGATTTCGGGCAATGACCAGAACCTCTTTAATCTT 768
Query 798 GACTATGTGACGCCGACTAAGTTTGACAATTACTACTACAAGAATCTTGTGAACTTTAGA 857
||||| |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 769 GACTAAGTGACGCCAACTAAGTTTGACAATTACTACTTCAAGAATCTGGTGAACTTTAGA 828
Query 858 GGACTCTTGAGTTCTGATGAGATATTGTTCACGCAAAGCA-TAGAGACTATGGAGATGGT 916
||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||||
Sbjct 829 GGACTCTTGAGTTCTGATGAGATTTTGTTCACGCAAAGCAGT-GAGACCATGGAGATGGT 887
Query 917 CAAGTATTACGCGGAGAATGAGGGAGCGTTCTTTGAGCAGTTTGCGAAGTCGATGGTGAA 976
||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||
Sbjct 888 CAAGTTTTACGCGGAGAATGAGGAAGCCTTCTTTGAGCAGTTCGCGAAGTCGATTGTGAA 947
Query 977 GATGGGGAACATCTCACCGTTGACGGGGACGGATGGTGAGATCCGGAGGATATGCCGGAG 1036
|||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 948 GATGGGGAACATCTCACCGTTGACGGGGACCGATGGTGAGATCAGGAGGATCTGCCGGAG 1007
Query 1037 GGTTAACCATGATGTTTGA 1055
||||||||||||| |||||
Sbjct 1008 GGTTAACCATGATTTTTGA 1026
> Ahg476012 jgi|Araly1|476012|fgenesh2_kg.2__1142__AT1G68850.1
Length=1189
Score = 65.8 bits (35), Expect = 8e-10
Identities = 42/45 (93%), Gaps = 2/45 (4%)
Strand=Plus/Plus
Query 945 TTCTTTGAGCAGTT-TGCGAAGTCGATGGTGAAGATGGGGAACAT 988
||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 947 TTCTTTGAGCAATTCT-CGAAGTCGATGGTGAAGATGGGGAACAT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119925412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5