BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51010.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485453 jgi|Araly1|485453|fgenesh2_kg.5__1445__AT3G51010.1 1216 0.0
> Ahg485453 jgi|Araly1|485453|fgenesh2_kg.5__1445__AT3G51010.1
Length=822
Score = 1216 bits (658), Expect = 0.0
Identities = 740/779 (95%), Gaps = 8/779 (1%)
Strand=Plus/Plus
Query 1 GTTTCAAGTCTCGA-ACTTTGTTGGAATCGGCTAAGTGATAATTTCGAAGCTTGATCGGT 59
|||||||||||| | |||||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 1 GTTTCAAGTCTC-AGACTTTGGTGGAATCGGCGAAGTGAAAATTTCGAAGCTTGATCGGT 59
Query 60 AAATCCAGGAGCTTTTGGATCGGAATCTGTTCGCTGATGCTTTGGTGAAAATGGGTTTCG 119
||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 60 AAATCTAACAGCTTTTGGATCGCAATCTGTTCGCTGATGCTTTGGTAAAAATGGGTTTCG 119
Query 120 GTGCAATTAGATCGATTTTGCGTCCATTGTCGAGAACCTTAGTTTCGCGTGCCGTCGTTA 179
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 120 GTGCAATTAGATCGATTTTTCGTCCATTTTCGAGAACCTTAGTTTCGCGTGCCGTCGCTA 179
Query 180 ACTACTCGTCTGCGCCGTTCAATGCGACGATTCCGGCTGCTAAACCCGAGTTATGTTCCT 239
|||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||
Sbjct 180 ACTACTCGTCTGCGCCGTTCGCTGCGACGATTCCGGCTGCGAAACCAGAGTTATGCTCCT 239
Query 240 TCTTCGGTGGATCGATGACTCATTTGAGGTTACCATGGATTCCAATGGCTAACCATTTTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTCGGTGGATCGATGACTCATTTGAGGTTACCATGGATTCCAATGGCTAACCATTTTC 299
Query 300 ATAGCTTAAGCTTGACTGATACTCGGC-TCCCGAAGAGACGACCCATGACTCATCCCAAG 358
||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 300 ATAGCTTAAGCTTAACTGATACTCGGCTTCCC-AAGAGACGACCCATGACTCATCCCAAG 358
Query 359 AGGAAAAGATCCAAATTGAAACCTCCAGGGCCTTATGCATACGTTCAATATACACCTGGC 418
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 AGGAAACGATCCAAATTGAAACCTCCAGGGCCTTATGCATATGTTCAATATACACCTGGC 418
Query 419 CAGCCAATTTCTTCAAACAATCCTAATGAGGGAAGTGTGAAGAGAAGAAATGCGAAGAAG 478
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 419 CAGCCAATTTCTTCAAACAATCCTAACGAGGGCAGTGTGAAGAGAAGGAATGCGAAGAAG 478
Query 479 CGCATAGGGCAGCGTCGTGCTTTTATACTGTCTgagaagaagaagaggcaagcgctggtg 538
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGGATAGGGCAGCGTCGTGCTTTTATACTGTCTGAGAAGAAGAAGAGGCAAGCGCTGGTG 538
Query 539 caagaggcgaagaggaagaagagaattaagcaagTGGAACGTAAGATGGCTGCTGTCGCT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAAGAGGCGAAGAGGAAGAAGAGAATTAAGCAAGTGGAACGTAAGATGGCTGCTGTCGCT 598
Query 599 AGGGACCGAGCATGGGCTGAAAGACTGATTGAGCTTCAA-CAGCTGGAAGAAGAGAAGAA 657
||||||||||| |||||||||||||||| ||||||| || ||||| ||||||||||||||
Sbjct 599 AGGGACCGAGCTTGGGCTGAAAGACTGACTGAGCTT-AAGCAGCTCGAAGAAGAGAAGAA 657
Query 658 GAAATCAATGTCTTCTTGAGATCAAACATAGAAATAATCCTAAATGACAATCTCTTTTCT 717
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 GAACTCAATGTCTTCTTGAGATCAAACATAGAAATAATCCCAAATGACAATCTCTTTTCT 717
Query 718 TGTCTTGAGTTAGAGAATTACTCTTCTTTGTTGTGTTTGGCATGTTCTCTTGAGAGTTA 776
||||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct 718 TGTCTTGAGTTT-AGAATTACGCTTCTTTGTTGTGTTTGGCGTGTTCTCTT-AGAGTTA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5