BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G51020.1

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485454 jgi|Araly1|485454|fgenesh2_kg.5__1446__AT3G51020.1         532    5e-151


> Ahg485454 jgi|Araly1|485454|fgenesh2_kg.5__1446__AT3G51020.1
Length=414

 Score =  532 bits (288),  Expect = 5e-151
 Identities = 374/414 (90%), Gaps = 12/414 (3%)
 Strand=Plus/Plus

Query  1    ATGTTTTCGTCAAGTCGTAC---ATCTACAAGCCTGACTTGTGGGTTTAAAGTGAACACT  57
            |||||||| ||||||||| |   |||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTTTCTTCAAGTCGTCCTGGATCTACAAGCCTGACTTGTGGGTTTAAAGTGAACACT  60

Query  58   AGCTCTCCCGAATGGCACAAGAGCATGACCAAAATCCTCAAGAAAATCAAAGGAGGGAAT  117
            | ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  61   AACTCTCCCGAATGGCACAAGAGCATGACGAAAATCCTTAAGAAAATCAAAGGAGGGAAT  120

Query  118  TTTTGGATAGACGTGGACGAAGGAATGGCATACGTCACGGGTCATGGCGATCCAAACAAG  177
            ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  121  TTTTGGATAGATGTGGACGAAGGAATGGCATACGTAACGGGTCAAGGCGATCCAAACAAG  180

Query  178  CTATTGAAACTAATGGGTTCAAAGAGAGGAAAAGATGCTGAAATGGCTTTTGTGAAAACC  237
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct  181  CTACTGAAACTAATGGGTTCAAAGAGAGGCAAAGATGCTGAAATGGCTTTTGTGAGAACC  240

Query  238  GGAACGCAAcatcatcaacatcatcatcatcatGATCCCAGTTTTTACA------GTCAG  291
            |||||||| |||| |||||||||||||||||||||||||| ||||||||      |||| 
Sbjct  241  GGAACGCACCATCCTCAACATCATCATCATCATGATCCCAATTTTTACAACAATTGTCAA  300

Query  292  AGCTCATACCCCGGCCAATGGGGAGGGTACTACCCT--GTT-GGCTCGACGATGCAACCT  348
            | |||||||   |||||||||  ||||||||||||   |   |||||| |||||||||||
Sbjct  301  AACTCATACTTTGGCCAATGGCCAGGGTACTACCCACCGGCCGGCTCGGCGATGCAACCT  360

Query  349  TACCATCAACAATATCCATATTCCGGCGGATATAATAACTACGGTTATTATTAG  402
            |||||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  361  TACCATCATCAATATCCATTTTCCGGTGGATATAATAACTACGGTTATTATTAG  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14422812642


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5