BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51030.1 Length=567 Score E Sequences producing significant alignments: (Bits) Value Ahg485455 jgi|Araly1|485455|fgenesh2_kg.5__1447__AT3G51030.1 754 0.0 > Ahg485455 jgi|Araly1|485455|fgenesh2_kg.5__1447__AT3G51030.1 Length=507 Score = 754 bits (408), Expect = 0.0 Identities = 479/512 (94%), Gaps = 9/512 (2%) Strand=Plus/Plus Query 18 GTGACGCGCATGCTAAGTAATTGaaaaaaaaaaaacacaagaggagaagaaacagaacag 77 ||||||||||||||||||||||| |||||| || |||||||| |||||||||||| Sbjct 1 GTGACGCGCATGCTAAGTAATTG----AAAAAACGCAAAAGAGGAGGAGAAACAGAACAT 56 Query 78 agaagaaaaagagagaagaTGGCTTCGGAAGAAGGACAAGTGATCGCCTGCCACACCGTT 137 || || | ||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 57 AGGAG-ATAAGAGAGAAGATGGCTTCGGAAGAAGGACAAGTGATCGCGTGCCATACCGTT 115 Query 138 GAGACATGGAACGAGCAGCTTCAGAAGGCTAATGAATCCAAAACTCTTGTGGTGGTTGAT 197 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 116 GAGACATGGAACGAGCAACTCCAGAAGGCTAATGAATCCAAAACTCTTGTGGTGGTTGAT 175 Query 198 TTCACGGCTTCTTGGTGTGGACCATGTCGTTTCATCGCTCCATTCTTTGCTGATTTGGCT 257 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 176 TTCACGGCTTCTTGGTGTGGACCATGTCGTTTTATCGCGCCATTCTTTGCTGATTTGGCT 235 Query 258 AAGAAACTTCCTAACGTGCTTTTCCTCAAGGTTGATACTGATGAATTGAAGTCGGTGGCA 317 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 AAGAAACTCCCTAATGTGCTTTTCCTCAAGGTTGATACTGATGAATTGAAGTCGGTGGCA 295 Query 318 AGTGATTGGGCGATACAGGCGATGCCAACCTTCATGTTTTTGAAGGAAGGGAAGATTTTG 377 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 296 AGTGATTGGGCGATACAGGCGATGCCAACCTTCATGTTCTTGAAGGAAGGGAAGATTTTG 355 Query 378 GACAAAGTTGTTGGAGCCAAGAAAGATGAGCTTCAGTCTACCATTGCCAAACACTTGGCT 437 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 356 GACAAAGTTGTTGGAGCCAAGAAAGATGAGCTTCAATCTACCATTGCCAAACACTTGGCT 415 Query 438 TAAGCTTTCCACTCTTATATATCTCTTAAGATGTTGGATTAATTG-TT-CTAT--TACTC 493 ||||||||| |||||||||||| |||||||||||| |||||||| || || | ||||| Sbjct 416 TAAGCTTTCGACTCTTATATATGTCTTAAGATGTTCGATTAATTAATTGCTCTAGTACTC 475 Query 494 TTGACATGTTATAACTTGTTCCCCTTTGTTAT 525 |||||||||||||||| |||||| |||||||| Sbjct 476 TTGACATGTTATAACTCGTTCCCTTTTGTTAT 507 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20718484827 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5