BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G51030.1

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485455 jgi|Araly1|485455|fgenesh2_kg.5__1447__AT3G51030.1         754    0.0  


> Ahg485455 jgi|Araly1|485455|fgenesh2_kg.5__1447__AT3G51030.1
Length=507

 Score =  754 bits (408),  Expect = 0.0
 Identities = 479/512 (94%), Gaps = 9/512 (2%)
 Strand=Plus/Plus

Query  18   GTGACGCGCATGCTAAGTAATTGaaaaaaaaaaaacacaagaggagaagaaacagaacag  77
            |||||||||||||||||||||||    ||||||  || |||||||| |||||||||||| 
Sbjct  1    GTGACGCGCATGCTAAGTAATTG----AAAAAACGCAAAAGAGGAGGAGAAACAGAACAT  56

Query  78   agaagaaaaagagagaagaTGGCTTCGGAAGAAGGACAAGTGATCGCCTGCCACACCGTT  137
            || || | ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  57   AGGAG-ATAAGAGAGAAGATGGCTTCGGAAGAAGGACAAGTGATCGCGTGCCATACCGTT  115

Query  138  GAGACATGGAACGAGCAGCTTCAGAAGGCTAATGAATCCAAAACTCTTGTGGTGGTTGAT  197
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  116  GAGACATGGAACGAGCAACTCCAGAAGGCTAATGAATCCAAAACTCTTGTGGTGGTTGAT  175

Query  198  TTCACGGCTTCTTGGTGTGGACCATGTCGTTTCATCGCTCCATTCTTTGCTGATTTGGCT  257
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  176  TTCACGGCTTCTTGGTGTGGACCATGTCGTTTTATCGCGCCATTCTTTGCTGATTTGGCT  235

Query  258  AAGAAACTTCCTAACGTGCTTTTCCTCAAGGTTGATACTGATGAATTGAAGTCGGTGGCA  317
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  AAGAAACTCCCTAATGTGCTTTTCCTCAAGGTTGATACTGATGAATTGAAGTCGGTGGCA  295

Query  318  AGTGATTGGGCGATACAGGCGATGCCAACCTTCATGTTTTTGAAGGAAGGGAAGATTTTG  377
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  296  AGTGATTGGGCGATACAGGCGATGCCAACCTTCATGTTCTTGAAGGAAGGGAAGATTTTG  355

Query  378  GACAAAGTTGTTGGAGCCAAGAAAGATGAGCTTCAGTCTACCATTGCCAAACACTTGGCT  437
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  356  GACAAAGTTGTTGGAGCCAAGAAAGATGAGCTTCAATCTACCATTGCCAAACACTTGGCT  415

Query  438  TAAGCTTTCCACTCTTATATATCTCTTAAGATGTTGGATTAATTG-TT-CTAT--TACTC  493
            ||||||||| |||||||||||| |||||||||||| ||||||||  || || |  |||||
Sbjct  416  TAAGCTTTCGACTCTTATATATGTCTTAAGATGTTCGATTAATTAATTGCTCTAGTACTC  475

Query  494  TTGACATGTTATAACTTGTTCCCCTTTGTTAT  525
            |||||||||||||||| |||||| ||||||||
Sbjct  476  TTGACATGTTATAACTCGTTCCCTTTTGTTAT  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20718484827


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5