BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51040.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485457 jgi|Araly1|485457|fgenesh2_kg.5__1449__AT3G51040.1 1363 0.0
> Ahg485457 jgi|Araly1|485457|fgenesh2_kg.5__1449__AT3G51040.1
Length=1022
Score = 1363 bits (738), Expect = 0.0
Identities = 937/1032 (91%), Gaps = 18/1032 (2%)
Strand=Plus/Plus
Query 24 CAAGGAGCCAAACACGTTCTTTAGTGTCATCGTTCGTAAAATTGGGGCCGAGAGAGAAAC 83
||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 CAATGAGCCAAACACGTTCTTTA--GCCATCGTTCGTAAAATTGGGGCCGAGAGAGAAAC 58
Query 84 AAAAATTTCCCAGGAAAAAGGCAGTGATTGAAGA-TTGTATTAGATCCGA-TTAATCGTC 141
| |||||| ||||| ||||||||||||| || | |||| |||||||||| |||||| ||
Sbjct 59 ACAAATTTTCCAGG-CAAAGGCAGTGATT-AAAATTTGTGTTAGATCCGATTTAATC-TC 115
Query 142 TTCCTGGTCGCTTGAACTGAGAATCAAATAATTGAGCTCAACTGGATTTGGATATGGGAG 201
|| | ||||||||||||||| ||||||||| ||| | |||||||| ||||| |||||||
Sbjct 116 GTCTTTGTCGCTTGAACTGAGGATCAAATAACTGAACCCAACTGGACTTGGAAATGGGAG 175
Query 202 AGACAGCAACAGATTCAGAACATCGCATGATGATCGGATTATCGGATCCTATGAAAATTG 261
|||||| || ||||||||||||| ||||||||||||| ||||| ||||| ||||||||||
Sbjct 176 AGACAGTAATAGATTCAGAACATGGCATGATGATCGGCTTATCAGATCCCATGAAAATTG 235
Query 262 ATCCCAAAAGAGACCGGTTTCCATGCTGCATTGTTTGGACACCTCTTCCCTTCATTTCAT 321
|||| | |||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 236 ATCCTAGAAGAGATCGGTTCCCATGCTGCATTGTTTGGACACCTCTTCCCTTAATTTCAT 295
Query 322 GGCTGGTTCCCTTCATCGGCCACGTCGGTATCTGCAGAGAAGACGGTGTCATCCTCGACT 381
||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 296 GGCTGGTTCCCTTTATCGGCCATGTGGGTATTTGCAGAGAAGACGGTGTCATCCTCGACT 355
Query 382 TTGCAGGACCTAATTTTGTCTGTGTTGATAATTTTGCATTTGGAGCTGTTTCTCGATATA 441
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 356 TTGCCGGACCTAATTTTGTCTGTGTTGATAATTTTGCATTTGGAGCTGTTGCTCGATATA 415
Query 442 TTCAAATCAACAAAG-AAATGGAGTCATCTCGTTCTTCCAGTTCTGGTATGTTCAATGGT 500
||||||||||| ||| ||| ||| ||||||||||||||| |||| ||||||||||||||
Sbjct 416 TTCAAATCAAC-AAGAAAAAGGAATCATCTCGTTCTTCCGGTTCACGTATGTTCAATGGT 474
Query 501 GAGAGGAGATATGAGCAAGAAGAAGATAGTCATGAGAAAGAGCCAACATGGGATGATGCA 560
||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 475 GAGAGCAGATATGAACAAGAAGAAGACAGTCATGAGAAAGAGCCAATGTGGGATGATGCA 534
Query 561 CTGAGAAAAAGCACGCAAGAGTACCAACATCACTCATATAACATACTCACATGCAACTGT 620
|||| |||| |||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 535 CTGATAAAAGGCACACAAGAGTACCAACATCACTCATATAACATATTCACATGCAACTGT 594
Query 621 CATTCCTTTGTAGCCAACAACCTGAACCGTCTATCTATAAAGTCAGGCGGATGGAACGTG 680
||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 595 CATTCCTTTGTAGCCAACAACCTGAACCGTCTAGCTGTAAAGTCAGGCGGGTGGAACGTG 654
Query 681 GTGAATCTCGCGACACTAGTGCTT-TTCAAGGGACGTTGGGTGAACAAAACGGCTATAGT 739
|||||||| ||| |||| ||| || ||||||||||||||||||| |||| ||||||||||
Sbjct 655 GTGAATCTAGCGGCACTTGTG-TTCTTCAAGGGACGTTGGGTGAGCAAAGCGGCTATAGT 713
Query 740 AAAGTCCTTGTTGCCTCCACTCATAGTCTACACTATAGGAATCTTACTCGGTGGTTGGAC 799
|||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 714 AAAGTCGTTGTTGCCTCCAGTCATAGTCTACACTATAGGAATCTTACTTGGTGGTTGGAC 773
Query 800 TTTCATTGCCTCCTGCTCGATTCTAGTGGTTTTGCTTACCGGGTGGTTCATCATTGGAAC 859
|||||| || |||||||||||||||| |||||||||||| | ||||||||||| |||||
Sbjct 774 TTTCATAGCTTCCTGCTCGATTCTAGCGGTTTTGCTTACTGCTTGGTTCATCATGGGAAC 833
Query 860 GTATTGTTTCAAGAAACTGATTCAGCTGTAGATTTGAATCATAATGTACAAATGATGTCT 919
|||||||||||||||||||| ||| | ||| ||||||| ||||||||||||||||||||
Sbjct 834 ATATTGTTTCAAGAAACTGATCCAGTTATAG-TTTGAATAATAATGTACAAATGATGTCT 892
Query 920 ACAAAATGttttttactttttACGATGGATATTTACAACTTTGCTTTGTGTGTGGTTAAT 979
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 893 ACAGAATGTTTTT-ACTTTTTACGATGGATATTTACAACTTTGCTTTGTTTGTGGTTAAT 951
Query 980 TTGTTACAA--GTAAAACTTTGAGGAGTAAAAGTGTGAATAT-T-TATGATTTGGGTAAA 1035
|||||| || | |||| ||||||||||||| ||| |||||| | |||||||||| ||||
Sbjct 952 TTGTTAAAAAAGCAAAAATTTGAGGAGTAAA-GTGGGAATATATATATGATTTGGATAAA 1010
Query 1036 GAAGGAAAGTAG 1047
||||||||||||
Sbjct 1011 GAAGGAAAGTAG 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5