BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51060.1
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937966 jgi|Araly1|937966|scaffold_502157.1 1797 0.0
Ahg906219 jgi|Araly1|906219|Al_scaffold_0003_3347 95.3 1e-18
> Ahg937966 jgi|Araly1|937966|scaffold_502157.1
Length=1151
Score = 1797 bits (973), Expect = 0.0
Identities = 1106/1166 (95%), Gaps = 25/1166 (2%)
Strand=Plus/Plus
Query 240 ggtggtggttgttgtcttggtgaatggcggggttTTTCTCGCTAGACGGTGGTGGAGGAG 299
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 GGTGGTGGTTG-TG-C-TGGTGAATGGCGGGGTTTTTCTCGCTAGACGGTGGTGGAGGAG 58
Query 300 GAGGCGGAGGTGGAGGTAACAACCAAGAAGATCACCGGAGCAACACAAATCCTCCTCCGC 359
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 59 GAGGCGGAGGTGGAGGAAACAACCAAGAAGATCACCGGAGCAACACAAACCCTCCTCCGC 118
Query 360 CTGTATCAGAAGCTTGGCTCTGGTATAGAAACCCTAACGTTAACGCAAACGCAAACACAA 419
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 119 CTGTATCAGAAGCTTGGCTCTGGTATAGAAA-CC---C--TAACGCAAACGCAAACACAA 172
Query 420 ACGTTAACGCAAACGCTCCTTCTTCGTCAAACGCTGCTTTAGGAACACTTGAGTTATGGC 479
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 173 ACG-T-----AAACGCTCCTTCTTCTTCAAACGCTGCTTTAGGAACACTTGAGTTATGGC 226
Query 480 AAAACCACAATCAGCAAGAGATCATGTTTCAGCATCAGCAACATCAGCAAAGGTTGGATC 539
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 227 AAAACCACAATCAGCAAGAAATCATGTTTCAGCATCAGCAACATCAACAAAGGTTGGATC 286
Query 540 TTTACTCTTCCGCCGCAGGTTTAGGTGTTGGACCAAGTAATCATAACCAATTCGATATCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TTTACTCTTCCGCCGCAGGTTTAGGTGTTGGACCAAGTAATCATAACCAATTCGATATCT 346
Query 600 CCGGCGAAACTTCAACCGCCGGCGCCGGAAGAGCTGCGGCGATGATGATGATTCGTAGTG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CCGGCGAAACTTCAACCGCCGGCGCCGGAAGAGCTGCGGCGATGATGATGATTCGTAGTG 406
Query 660 GT-------G-GTA-GCGGAGGAGGAAGTGGTGGTGTGAGCTGTCAAGACTGTGGGAATC 710
|| | | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GTGGCGCCGGAGGAGGAGGAGGAGGAAGTGGTGGTGTGAGCTGTCAAGACTGTGGGAATC 466
Query 711 AAGCGAAGAAAGATTGTTCTCACATGAGGTGTAGAACTTGTTGTAAAAGCCGTGGCTTCG 770
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 467 AAGCGAAGAAAGATTGTGCTCACATGAGGTGTAGAACTTGTTGTAAGAGCCGTGGCTTCG 526
Query 771 AGTGTTCTACTCACGTGAGAAGCACGTGGGTCCCTGCTGCTAAACGCCGTGAGAGACAAC 830
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 527 AGTGTCCTACTCACGTGAGAAGCACGTGGGTTCCTGCTGCTAAACGCCGTGAGAGACAAC 586
Query 831 AGCAATTAGCTACGGTCCAGCCTCAAACTCAGCTGCCTCGCGGTGAGAGCGTTCCTAAAC 890
||||| |||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||
Sbjct 587 AGCAACTAGCTACGGTTCAGCCGCAAACGCAGCTACCACGCGGTGAGAGCGTTCCTAAAC 646
Query 891 GCCACCGTGAAAATTTACCGGCAACTTCATCGTCTCTTGTCTGCACTCGCATACCTTCTC 950
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 647 GCCACCGTGAGAATTTACCGGCAACTTCTTCATCTCTTGTCTGCACTCGTATACCTTCTC 706
Query 951 ATTCAGGGCTAGAAGTTGGCAATTTCCCGGCGGAGGTGAGTTCATCGGCGGTGTTTAGGT 1010
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 707 ATTCAGGGCTAGAAGTTGGGAATTTCCCGGCGGAGGTGAGTTCATCAGCAGTGTTTAGAT 766
Query 1011 GCGTGCGTGTGAGCTCAGTAGAAGATGGAGAAGAAGAGTTTGCTTACCAAACAGCTGTAA 1070
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 767 GCGTGCGTGTGAGCTCAGTAGAAGATGGAGAAGAAGAATTTGCTTACCAAACAGCCGTAA 826
Query 1071 GCATTGGTGGTCACATTTTCAAAGGCATTTTATACGACCTCGGTCCTGGAAGTAGTGGTG 1130
|||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 827 GCATCGGGGGTCACATTTTCAAAGGCATTCTATACGACCTCGGTCCTGGAAGTAGTGGTG 886
Query 1131 GCGGAGGCTACAACGTTGTTGCCGCCGGTGAGAGCTCCTCTGGTGGTGGTGGAGCTCAAC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GCGGAGGCTACAACGTTGTTGCCGCCGGTGAGAGCTCCTCTGGTGGTGGTGGAGCTCAAC 946
Query 1191 AGCTGAATCTCATAACAGCTGGCTCTGTAACCGTTGCTACCGCTTCTTCCTCTACTCCAA 1250
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 947 AGCTGAATCTCATAACAGCTGGCTCTGTAACGGTTGCTACCGCTTCTTCCTCTACTCCAA 1006
Query 1251 ACCTCGGTGGTATTGGCAGCTCATCAGCCGCGGCAGCCACGTACATTGATCCAGCCGCTC 1310
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1007 ACCTCGGTGGTATTGGCAGCTCATCCGCCGCCGCAGCCACGTACATTGATCCAGCCGCTC 1066
Query 1311 TTTATCCAACTCCGATCAATACATTCATGGCCGGTACACAATTCTTTCCCAACCCAAGAT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TTTATCCAACTCCGATCAATACATTCATGGCCGGTACACAATTCTTTCCCAACCCAAGAT 1126
Query 1371 CATGAGGAAAATCTGACATAAAAGCA 1396
| ||| |||||||||||||||| |||
Sbjct 1127 CGTGATGAAAATCTGACATAAA-GCA 1151
> Ahg906219 jgi|Araly1|906219|Al_scaffold_0003_3347
Length=651
Score = 95.3 bits (51), Expect = 1e-18
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1111 CGGTCCTGGAAGTAGTGGTGGCGGAGGCTACAACGTTGTTGCCGCCGGTGAGAGCTCCTC 1170
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 263 CGGCCCTGGAAGTAGTTGTGGCGGGGGCTACAACGTTGTTGCCGCCGGTGAGAGCTCCTC 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5