BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51075.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485459 jgi|Araly1|485459|fgenesh2_kg.5__1451__AT3G51075.1 1770 0.0
> Ahg485459 jgi|Araly1|485459|fgenesh2_kg.5__1451__AT3G51075.1
Length=1779
Score = 1770 bits (958), Expect = 0.0
Identities = 1079/1135 (95%), Gaps = 17/1135 (1%)
Strand=Plus/Minus
Query 1 AGAAGTTTCTGGTCTCCAGAATCCTTTTTGTGCACTTAAGATTCCTTCTTGGTGTTTGGA 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1779 AGAAGTTTCTGGTCTCCAGAATCCTTTTTGTGCACTTAATATTCCTTCTTGGTGTTTGGA 1720
Query 61 GAAAGTTAAGTGAACATCCCAGTGCAGTGACTTCAACATGTTCTCAACTTCTCTTATCAC 120
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1719 GAAGGTTAAATGAACATCCCAGTGTAGTGACTTCAACATGTTCTCAACTTCTCTTATCAC 1660
Query 121 ATTTGATTCGTCACGAACTATTAGTTTACCTCCTGGTCTTACTATTCTATCCACTTCTGC 180
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1659 ATTCGATTCGTCACGAACTATGAGTTTACCTCCTGGTCTTACTATTCTATCCACTTCTGC 1600
Query 181 CATTACTGGAACAAGATTGCACCTTTCAAAACAAAACA-AAACAAGAGACTTA-TTGTTG 238
||||||||||||||||||||||||||||||| ||| | |||||||||| || || |||
Sbjct 1599 CATTACTGGAACAAGATTGCACCTTTCAAAA-GAAATAGAAACAAGAGA-ATATTTTTTG 1542
Query 239 ATGA-AAC--GTTACCAAAAGTGTTCATAATCTGTAGTGAAATCTCGAGGAGCTGGTTTC 295
| | ||| ||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1541 CTTACAACATGTTTCC--AA-TGTTCATAATCTGTAGTGAAATCTCGAGGAGCTGGTTTC 1485
Query 296 CCATATATCCCCATTTGAGAGCTGTTTAACCAGTAAGGCGGTGTTTGAAGCCGACGGGGC 355
||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1484 CCATAGATCCCCATTTGAGAGCTGTTTAGCCAGTAAGGAGGTGTTTGAAGCCGACGGGGC 1425
Query 356 CAATTCACGGGCCACTTGCTTCCTCTCTCGACCACATTGGTTTCTGGTAGATTGCAGCAC 415
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 CAGTTCACTGGCCACTTGCTTCCTCTCTCGACCACATTGGTTTCTGGTAGATTGCAGCAC 1365
Query 416 CAATACCATTGAGTTTATCCTTGTTGATTGTCACAAGTTCCCAGCACAAGGATTTTGTCA 475
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CAACACCATTGAGTTTATCCTTGTTGATTGTCACAAGTTCCCAGCACAAGGATTTTGTCA 1305
Query 476 ACGCGGACATTTCTACATCACTCAAAACATCTCAGGTTCAGTGAAACAAAC-AAAAGAAG 534
||||||||||||||| || ||||||||||| |||| ||||||||||| | || | |||
Sbjct 1304 ACGCGGACATTTCTATATAACTCAAAACATGTCAGCTTCAGTGAAAC---CTAATA-AAG 1249
Query 535 GAGGAACTCTAGTTAAGTTCAAGCATTTTACTTTAGTCATTACCTTTCCAGATTTGAACA 594
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1248 GAGGAACTCTATTTAAGTTCAAGCATTTTACTTTAGTCCTTACCTTTCCAGATTTGAACA 1189
Query 595 TCTTCTTCAAGCTTCTGGTAGACTGGTGTTGCTGACCAGACAAAATAACCTCCAGGCCTA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1188 TCTTCTTCAAGCTTCTGGTAGACTGGTGTTGCTGACCAGACAAAATAACCTCCGGGCCTA 1129
Query 655 AGCATCCGATTAAGTTCCAGAAGAAGCATACCACCCTCATTATGCCATGGGACTCTACAA 714
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1128 AGCATCCGATTAAGTTCCAGAAGAAGCATACCTCCCTCATTATGCCATGGGACTCTACAA 1069
Query 715 CGTGCACAGTGGATAAGATCAAACACTCTGCTCGGGAATGGCAGTCGCTTAGAGCCCATA 774
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1068 CGTGCACAGTGGATAAGATCAAACACTCTGCTCGGGAATGGCAGTCGCTTGGAGCCCATA 1009
Query 775 ACTGCTGAGATGGCTGGAATCTTTCTTTCAAGAGCAAACTGGACTTGAGCCTCGTGTTCA 834
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1008 ACCGCAGAGATGGCTGGAATCTTTCTTTCAAGAGCAAACTGAACTTGAGCCTCGTGTTCA 949
Query 835 TCTTTTGGTGCAAGAGACATTGCTATAACATCTCTTTCAAAGAGGAAACCGCCAAAGCTC 894
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 948 TCTTTCGGTGCAAGAGACATTGCTATAACATCTCTTTCAAAGAGGAAACCTCCAAAGCTC 889
Query 895 GCCACTCCACATCCAACATCCAATATGACCCGATTTTAACACTATACTGAAATCAAGAAA 954
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 888 GCCACTCCACATCCAACATCCAATATGACCCGATTTTAACGCTACCCTGAAATCAAGAAA 829
Query 955 TGAGTGTTCACCTGCTGAAGAAAATCGATATAATGAAGAGCTCCATGGATGAACTGTGTT 1014
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TGA--GTTCACCTGCTGAAGAAAATCGATATAATGAAGAGCTCCATGGATGAACTGTGTT 771
Query 1015 CCACCACCAGGAAACGTCAAGAACTCGCCAGTGACCTTCACCCAGTTCTGATGTCCTTTT 1074
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 770 CCACCACCAGGAAACGTCAAGAACTCGCCAGTGACTTTCACCCAGTTCTGATGTCCTTTT 711
Query 1075 ACCTCAGCTAGCTTTGTGTGTGGGACATTGTGGTACCATATCTACTAGATCACAT 1129
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 710 ACCTCAGCTAGCTTTGTGTGTGGGACATTGTGATACCATATCTACTAGATCACAT 656
Score = 747 bits (404), Expect = 0.0
Identities = 459/483 (95%), Gaps = 14/483 (3%)
Strand=Plus/Minus
Query 1178 GTTGCTCA---TCAGACTCTTGTTTCGTGGGTTCGGGCTCATCATTACCGTTTGAAGAGG 1234
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GTTGCTCATCTTCAGA-TCTTGTTTCGTGGGTTCGGGCTCATCATTACCGTTTGAAGAGA 447
Query 1235 CAGACACATCACTCCTCTCTGTCTCTGCGACAGCCGCTCGAGTGGAGCCTTGTGTGATCT 1294
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 446 CAGACACATCACTCCTCTCTGTCTCTGCGACAGCCGTTCGAGTGGAGCCTTGTGTGATCT 387
Query 1295 GCGGTGGAATAACGGAATTGGAAGAAAGCATCCACACCCCGAAGACACACAGAGCCACAA 1354
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 386 GCGGTGGGATAACAGAATTGGAAGAAAGCATCCACACACCGAAGACACACAGAGCCACAA 327
Query 1355 AGATGACCATTGTAATGGTCGACGCATAGGACGACGTCGAAGTGCGTTTGTTGCCACGTC 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 AGATGACCATTGTAATGGTCGACGCATAGGACGACGTCGAAGTGCGTTTGTTGCCACGTC 267
Query 1415 CCCTCCCGAAGGCCATCTTTACGGTCTTGCGTATAGTACTAGTTATggagaaagaagaag 1474
|||||||||| ||||||||| ||||| |||| || |||||| |||| | ||||||
Sbjct 266 CCCTCCCGAATGCCATCTTTCCGGTCGTGCG--TA-TACTAG----GGAG--A-AAGAAG 217
Query 1475 aagaaaaatgaaggagtaaaatgggagttgaaggaagtaaaaatagaagaaaaagaagag 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AAGAAAAATGAAGGAGTAAAATGGGAGTTGAAGGAAGTAAAAATAGAAGAAAAAGAAGAG 157
Query 1535 aaagagaggttgtgaagagacaagaCTGGATCAAAGATCCTATAGAGTCGGATATGGGAC 1594
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 156 AAAGAGAGGTTGTGAAGAGACAAGACTGGATCAAAGATCCTATAGAGTCGGACATGGGAC 97
Query 1595 TTTCAATTTCGTGTCTCTAAATTTAGTTATGGTCTCTGTGTTTCATATTTTGTTGTCCAT 1654
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 96 TTTCAATTTCGTGTCTCTAAATTTAGTTATGGTCTCTGTGTCTCATATTTTGTTGTCCAT 37
Query 1655 GAA 1657
|||
Sbjct 36 GAA 34
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5