BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51080.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323669 jgi|Araly1|323669|fgenesh1_pm.C_scaffold_5001213 1038 0.0
Ahg491007 jgi|Araly1|491007|fgenesh2_kg.7__440__AT4G36240.1 128 1e-28
Ahg496973 jgi|Araly1|496973|fgenesh2_kg.8__2789__AT5G66320.1 56.5 5e-07
> Ahg323669 jgi|Araly1|323669|fgenesh1_pm.C_scaffold_5001213
Length=945
Score = 1038 bits (562), Expect = 0.0
Identities = 827/946 (87%), Gaps = 53/946 (6%)
Strand=Plus/Plus
Query 135 ATGGAGAGTGTTGAATTGACGTTGAAGAACAGTAACATGAAAGACAAAACCCT-A----- 188
||||| |||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 1 ATGGAAAGTGTTGAATTGGCGTTGAAGAACAGTAACAGGAAAGACAAAACCCTCACCGTC 60
Query 189 ACCGGCGGCGCTCAAAATGGCGATGATTTCTCCGTCGACGACTTGCTTGACTTCTCAAAA 248
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 61 ACCGGCGGCGCTCAAAATGGGGAAGATTTCTCCGTCGACGACTTGCTTGACTTCTC--TA 118
Query 249 GAAGAAGAAGACGACGACGTTTTGGTTGAGGATGAGGCTGAATTGAAAGTACAACGAAAA 308
| ||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 119 -ACGAAGACGACGACGACGTTTTCGTTGAGGATGAGACTGAATTGAAAGTACAAAGAAAA 177
Query 309 AGAGGAGTCTCTGACGAAAATACCCTTCACCGGAGCAACGATTTCTCCACCGCTGATTTC 368
||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||
Sbjct 178 AGAGGAGTCTCTGACGAAATTACCCTTCACCGGACCAACGATTTCTCCACCGCCGATTTC 237
Query 369 CACACTAGCGGGCTTTCCGTTCCGATGGATGATATAGCGGAACTTGAATGGTTATCAAAT 428
| ||| |||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 238 CCCACAAGCGAGCTCGCCGTTCCGATGGATGATTTAGCGGAACTTGAATGGTTGTCAAAT 297
Query 429 TTCGTAGATGATTCTTCTTTCACGCCGTATTCT-GCTCCGACGAATAAACCGGTTTGGTT 487
|||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 298 TTCGTAGAGGATTCTTCTTTCACGCCGTATT-TGGCTCCGACGAAGAAACCGGTTTGGTT 356
Query 488 AACCGGAAATCGGAGACATCTTGTACAACCGGTTAAAGAGGAGACCTGCTTCAAATC-CC 546
|||||||||||||||||||| ||||| | |||||||||| ||||||||||||||| | ||
Sbjct 357 AACCGGAAATCGGAGACATCCTGTACCATCGGTTAAAGAAGAGACCTGCTTCAAAGCTCC 416
Query 547 AACATCCGGCCG-TCAAAACCAGACCCAAACGAGCCAGAACCGGAGTCAGAGTCTGGTCT 605
| ||| ||| | |||||||| |||||||||| |||||||||||||| | |||||||
Sbjct 417 TCC-TCCT-CCGGTTAAAACCAGGCCCAAACGAGTCAGAACCGGAGTCACCGGCTGGTCT 474
Query 606 CATGGTTCGCAGTCGTTAACCGACTCATCTTCAAGCTCTACAACATCTTCGTCGTCCTCT 665
||||||||| | | | |||||||| || ||||||||||| ||||| ||||||
Sbjct 475 CATGGTTCG--G-----A-C----TCATCTTCCAGTTCTACAACATCGTCGTCTTCCTCT 522
Query 666 CCTCGTCCTTCAAGCCCTCTATGGCTCGCCAGCGGTCAGTTTCTTGATGAGCCAATGACT 725
|| |||||||||||||||||||||||||| ||| | |||||||||||||| || || ||
Sbjct 523 TCTGGTCCTTCAAGCCCTCTATGGCTCGCCGGCGCTGAGTTTCTTGATGAGTCAGTGGCT 582
Query 726 AAAACACA-AA-A-GAAGAAGAA-A-G-------TTTGGAAAAACGCTGGTCAGACGCAA 773
|||||||| || | ||||||||| | | ||||||||||| |||||||||||||
Sbjct 583 AAAACACAGAAGAAGAAGAAGAAGAAGAAGAAGGTTTGGAAAAACTCTGGTCAGACGCAG 642
Query 774 ACGCAAACGCAGACGCAGAC------GC-GGC-AG----TGTGGTCATTGTGGAGTTCAG 821
||||||||||| |||||||| || || || |||||||||||||| ||||||
Sbjct 643 ACGCAAACGCAAACGCAGACTCAAACGCAGGGGAGGCGGTGTGGTCATTGTGGCGTTCAG 702
Query 822 AAAACGCCGCAGTGGAGAGCAGGACCATTAGGAGCGAAGACGTTGTGTAATGCGTGTGGT 881
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 703 AAAACGCCGCAGTGGAGAGCAGGACCATTAGGAGCTAAGACGTTGTGTAATGCGTGTGGT 762
Query 882 GTGCGTTACAAATCGGGTCGGTTACTACCCGAATATAGACCCGCTTGTAGCCCAACATTT 941
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 763 GTGCGTTACAAATCAGGTCGGTTATTACCCGAATATAGACCCGCTTGTAGCCCAAC-TTT 821
Query 942 -TCGAGTGAGCTTCACTCAAACCACCACAGTAAAGTCATTGAGATGCGTAGGAAGAAAGA 1000
||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 822 CTCGAGTGAGCTTCACTCCAACCACCACCGTAAAGTCATTGAGATGCGTCGGAAGAAGGA 881
Query 1001 GACTTCTGACGGTGCTGAAGAAACCGGTTTGAACCAGCCGGTTCAG 1046
| ||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 882 GGCTTCTGATGATGCTGATCAAACCGGTTTGAACCAGCCGGTTCAG 927
> Ahg491007 jgi|Araly1|491007|fgenesh2_kg.7__440__AT4G36240.1
Length=897
Score = 128 bits (69), Expect = 1e-28
Identities = 129/158 (82%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 807 CATTGTGGAGTTCAGAAAACGCCGCAGTGGAGAGCAGGACCATTAGGAGCGAAGACGTTG 866
||||||||||| ||||| ||||| || |||||| || |||||||| ||||| || ||
Sbjct 525 CATTGTGGAGTCCAGAAGACGCCTCAATGGAGAATGGGTCCATTAGGTGCGAAAACATTA 584
Query 867 TGTAATGCGTGTGGTGTGC-GTTACAAATCGGGTCGG-TTACTACCCGAATATAGACCCG 924
|||||||| ||||| || | ||| || ||||||||| || ||||||||||||||||||
Sbjct 585 TGTAATGCTTGTGGGGTCCGGTT-TAAGTCGGGTCGGCTT-TTACCCGAATATAGACCCG 642
Query 925 CTTGTAGCCCAACATTTTCGAGTGAGCTTCACTCAAAC 962
|||||||||||||||| | | ||| ||||||| |||
Sbjct 643 CTTGTAGCCCAACATTCACCACCGAGATTCACTCGAAC 680
> Ahg496973 jgi|Araly1|496973|fgenesh2_kg.8__2789__AT5G66320.1
Length=1443
Score = 56.5 bits (30), Expect = 5e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 209 CGATGATTTCTCCGTCGACGACTTGCTTGACTT 241
||| |||||||||||||||||||||||||||||
Sbjct 289 CGAGGATTTCTCCGTCGACGACTTGCTTGACTT 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5