BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51090.1 Length=1251 Score E Sequences producing significant alignments: (Bits) Value Ahg485462 jgi|Araly1|485462|fgenesh2_kg.5__1454__AT3G51090.1 1735 0.0 > Ahg485462 jgi|Araly1|485462|fgenesh2_kg.5__1454__AT3G51090.1 Length=1210 Score = 1735 bits (939), Expect = 0.0 Identities = 1153/1247 (92%), Gaps = 51/1247 (4%) Strand=Plus/Plus Query 1 AAAGACGCACGCTTTCTCTATCATCGTCGTCCGTCTGTTTCATTTGATGGTGCGGAGACG 60 |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1 AAAGACTCACGCTTTCTCTACCATCGTCGTCCGTCTGTTTCATTTGATGGTGCTGAGACG 60 Query 61 TCTAAGCGATTTCCATGGATGACACCACCTTCATAAGAAC-AATCCTCACCAAACCCATC 119 ||||||||||||||||||||||||| |||||||| ||| | ||||| ||||||||||||| Sbjct 61 TCTAAGCGATTTCCATGGATGACACAACCTTCATTAGATCAAATCC-CACCAAACCCATC 119 Query 120 TTCAAATTTTTCTTCTTTTGACCACCA-TTGCATGCTTACCCGATTGGGAAACTCTTTGT 178 |||||| |||||||||||||| | || ||||||||||||||||||||||||||| |||| Sbjct 120 TTCAAAATTTTCTTCTTTTGA--A-CATTTGCATGCTTACCCGATTGGGAAACTC-TTGT 175 Query 179 TATCCTTATTGATCTTCTTCCAACGGCGATTTCCCGATCC-AAATTTTGGGTTGATTGAA 237 |||||||||||||||||||||||| ||||||||||||||| ||||||| | | | Sbjct 176 TATCCTTATTGATCTTCTTCCAACAGCGATTTCCCGATCCGAAATTTT--G--G---G-- 226 Query 238 TTCAAAGTTTCCGTTTTTACAAACCAATTTCGGGAAAGTTTTCATCttttttttATGGCT 297 |||||||||||| ||||||| | || || || ||||||| ||||| |||||| Sbjct 227 TTCAAAGTTTCCATTTTTAC--A--AA--TC----AA--TTTCATC--TTTTTGATGGCT 272 Query 298 GCTTACGCGAATTATCTCCGACTCGCACGACTTGGAGGAA---CAAGTTCAGGTGTAAAC 354 ||||||||||||||||||||||||||||| |||||| || || |||||||||||| Sbjct 273 GCTTACGCGAATTATCTCCGACTCGCACGTCTTGGAACAAGTTCATCATCAGGTGTAAAC 332 Query 355 CTGTCGACTCTCAGATCATTCGGTTATTCAAATCCAGCATTTGACAAGACTCAAGAGTTT 414 |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| || Sbjct 333 CTGTCGACTCTCAGATCAATCGGTTATTCAAATCCAACATTTGACAAGACTCACGAGATT 392 Query 415 CG---CTCCTCTTCTTCATCGTTAGTAT--CA-TATTCTTCGTTCAGACAATTCCACGCC 468 || ||| ||||||||||||||||||| || | ||||||||||||||||||||||||| Sbjct 393 CGTTCCTCTTCTTCTTCATCGTTAGTATCACATTCTTCTTCGTTCAGACAATTCCACGCC 452 Query 469 AGATTCATATCTCAGCTTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTA 528 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 AGATTCATCTCTCAACTTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTC 512 Query 529 GCTTTGGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATAACC 588 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 513 GCTTTGGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCGAAGCAAGCCGAGGCAATAACC 572 Query 589 GGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCACAGTTAGTTGTCTCC 648 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 573 GGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCACAGTTGGTTGTCTCC 632 Query 649 AAGGGAGAGATGCAGAAAGCTGAAATGACGCAGGAATCAAACTTATCCAAGTTCAAAAGT 708 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 633 AAGGGAGAGATGCAGAAAGCTGAAATGACACAGGAATCAAACTTGTCCAAGTTCAAAAGT 692 Query 709 GAAATTAATAGTTCACTGGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTC 768 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 GAAATTAACAGTTCACTGGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTC 752 Query 769 CGCAATGACATAGAGCGAATCCGCTCTGATATAAGACACGAGATCGATAAAGTCACAGCA 828 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 753 CGCAATGACATAGAGCGAATCCGCTCTGATATAAGACACGAGATCGACAAAGTCACAGCA 812 Query 829 GGACAACGGTTGGACCTGAATCTTGAAAAAGGGAGGATAAGAGATGAGTTACAAAATCAA 888 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 GGACAACGGTTGGATCTGAATCTTGAAAAAGGGAGGATAAGAGATGAGTTACAAAATCAA 872 Query 889 AACGGAGAAACCTCTAACCTTACAAACAAACTTGACCGTGAGATTCACACTTTGAGAGCT 948 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 873 AACGCAGAAACCTCTAACCTTACAAACAAACTTGACCGTGAGATTCACACTTTGAGAGCT 932 Query 949 CAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACTCTTGTCTCCATC 1008 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 933 CAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACACTTGTCTCCATC 992 Query 1009 TCAGCCGTTGGTCTCGCTGTCCTCCGGATCGTCATGTAACTCCATCTGACGGTGCCGGTT 1068 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 993 TCAGCAGTTGGTCTCGCTGTCCTCCGGATCGTCATGTAACTCCATCCGACGGTGCCGGTT 1052 Query 1069 TTAAAGACCAACTCATCAATCTTCCCTGTCTTTT-AATTACGGGATGAAAATCTT-GGTC 1126 |||| ||||||||||||| |||||||||| |||| ||||||||||||||| |||| |||| Sbjct 1053 TTAA-GACCAACTCATCA-TCTTCCCTGTTTTTTTAATTACGGGATGAAA-TCTTTGGTC 1109 Query 1127 ATGTTAATTATATATTCGTATGTTTAATGTAATTGTATTTCCCCTTTTTTATGTGAAAGA 1186 |||||||||| | ||||| |||||||||||||||||| | |||||| ||||||||| Sbjct 1110 TTGTTAATTAT-T---CGTATCTTTAATGTAATTGTATTTAC--TTTTTTGTGTGAAAGA 1163 Query 1187 AATAAAGAATAACCAGTCTAGTAAATTTGAACCCTTCATGTATATGA 1233 |||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 1164 AATAAAGAATCACCAATCTAGTAAATTTGAACCCTTCATGTATATGA 1210 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46738696242 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5