BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51090.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485462 jgi|Araly1|485462|fgenesh2_kg.5__1454__AT3G51090.1 1735 0.0
> Ahg485462 jgi|Araly1|485462|fgenesh2_kg.5__1454__AT3G51090.1
Length=1210
Score = 1735 bits (939), Expect = 0.0
Identities = 1153/1247 (92%), Gaps = 51/1247 (4%)
Strand=Plus/Plus
Query 1 AAAGACGCACGCTTTCTCTATCATCGTCGTCCGTCTGTTTCATTTGATGGTGCGGAGACG 60
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AAAGACTCACGCTTTCTCTACCATCGTCGTCCGTCTGTTTCATTTGATGGTGCTGAGACG 60
Query 61 TCTAAGCGATTTCCATGGATGACACCACCTTCATAAGAAC-AATCCTCACCAAACCCATC 119
||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||||||||
Sbjct 61 TCTAAGCGATTTCCATGGATGACACAACCTTCATTAGATCAAATCC-CACCAAACCCATC 119
Query 120 TTCAAATTTTTCTTCTTTTGACCACCA-TTGCATGCTTACCCGATTGGGAAACTCTTTGT 178
|||||| |||||||||||||| | || ||||||||||||||||||||||||||| ||||
Sbjct 120 TTCAAAATTTTCTTCTTTTGA--A-CATTTGCATGCTTACCCGATTGGGAAACTC-TTGT 175
Query 179 TATCCTTATTGATCTTCTTCCAACGGCGATTTCCCGATCC-AAATTTTGGGTTGATTGAA 237
|||||||||||||||||||||||| ||||||||||||||| ||||||| | | |
Sbjct 176 TATCCTTATTGATCTTCTTCCAACAGCGATTTCCCGATCCGAAATTTT--G--G---G-- 226
Query 238 TTCAAAGTTTCCGTTTTTACAAACCAATTTCGGGAAAGTTTTCATCttttttttATGGCT 297
|||||||||||| ||||||| | || || || ||||||| ||||| ||||||
Sbjct 227 TTCAAAGTTTCCATTTTTAC--A--AA--TC----AA--TTTCATC--TTTTTGATGGCT 272
Query 298 GCTTACGCGAATTATCTCCGACTCGCACGACTTGGAGGAA---CAAGTTCAGGTGTAAAC 354
||||||||||||||||||||||||||||| |||||| || || ||||||||||||
Sbjct 273 GCTTACGCGAATTATCTCCGACTCGCACGTCTTGGAACAAGTTCATCATCAGGTGTAAAC 332
Query 355 CTGTCGACTCTCAGATCATTCGGTTATTCAAATCCAGCATTTGACAAGACTCAAGAGTTT 414
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 333 CTGTCGACTCTCAGATCAATCGGTTATTCAAATCCAACATTTGACAAGACTCACGAGATT 392
Query 415 CG---CTCCTCTTCTTCATCGTTAGTAT--CA-TATTCTTCGTTCAGACAATTCCACGCC 468
|| ||| ||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 393 CGTTCCTCTTCTTCTTCATCGTTAGTATCACATTCTTCTTCGTTCAGACAATTCCACGCC 452
Query 469 AGATTCATATCTCAGCTTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTA 528
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AGATTCATCTCTCAACTTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTC 512
Query 529 GCTTTGGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATAACC 588
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 513 GCTTTGGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCGAAGCAAGCCGAGGCAATAACC 572
Query 589 GGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCACAGTTAGTTGTCTCC 648
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 573 GGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCACAGTTGGTTGTCTCC 632
Query 649 AAGGGAGAGATGCAGAAAGCTGAAATGACGCAGGAATCAAACTTATCCAAGTTCAAAAGT 708
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 633 AAGGGAGAGATGCAGAAAGCTGAAATGACACAGGAATCAAACTTGTCCAAGTTCAAAAGT 692
Query 709 GAAATTAATAGTTCACTGGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTC 768
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GAAATTAACAGTTCACTGGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTC 752
Query 769 CGCAATGACATAGAGCGAATCCGCTCTGATATAAGACACGAGATCGATAAAGTCACAGCA 828
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 753 CGCAATGACATAGAGCGAATCCGCTCTGATATAAGACACGAGATCGACAAAGTCACAGCA 812
Query 829 GGACAACGGTTGGACCTGAATCTTGAAAAAGGGAGGATAAGAGATGAGTTACAAAATCAA 888
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GGACAACGGTTGGATCTGAATCTTGAAAAAGGGAGGATAAGAGATGAGTTACAAAATCAA 872
Query 889 AACGGAGAAACCTCTAACCTTACAAACAAACTTGACCGTGAGATTCACACTTTGAGAGCT 948
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AACGCAGAAACCTCTAACCTTACAAACAAACTTGACCGTGAGATTCACACTTTGAGAGCT 932
Query 949 CAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACTCTTGTCTCCATC 1008
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 933 CAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACACTTGTCTCCATC 992
Query 1009 TCAGCCGTTGGTCTCGCTGTCCTCCGGATCGTCATGTAACTCCATCTGACGGTGCCGGTT 1068
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 993 TCAGCAGTTGGTCTCGCTGTCCTCCGGATCGTCATGTAACTCCATCCGACGGTGCCGGTT 1052
Query 1069 TTAAAGACCAACTCATCAATCTTCCCTGTCTTTT-AATTACGGGATGAAAATCTT-GGTC 1126
|||| ||||||||||||| |||||||||| |||| ||||||||||||||| |||| ||||
Sbjct 1053 TTAA-GACCAACTCATCA-TCTTCCCTGTTTTTTTAATTACGGGATGAAA-TCTTTGGTC 1109
Query 1127 ATGTTAATTATATATTCGTATGTTTAATGTAATTGTATTTCCCCTTTTTTATGTGAAAGA 1186
|||||||||| | ||||| |||||||||||||||||| | |||||| |||||||||
Sbjct 1110 TTGTTAATTAT-T---CGTATCTTTAATGTAATTGTATTTAC--TTTTTTGTGTGAAAGA 1163
Query 1187 AATAAAGAATAACCAGTCTAGTAAATTTGAACCCTTCATGTATATGA 1233
|||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1164 AATAAAGAATCACCAATCTAGTAAATTTGAACCCTTCATGTATATGA 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5