BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51100.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485463 jgi|Araly1|485463|fgenesh2_kg.5__1455__AT3G51100.1 1051 0.0
> Ahg485463 jgi|Araly1|485463|fgenesh2_kg.5__1455__AT3G51100.1
Length=885
Score = 1051 bits (569), Expect = 0.0
Identities = 703/764 (92%), Gaps = 23/764 (3%)
Strand=Plus/Plus
Query 97 gagagaTAGACAAGTTCCGCGATGAACGAAGGCTCGAGCGAAGAAGTAACGAGGACGGTA 156
||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGCTAGAGAAATTTCGCGATGAACGAAGGCTCGAGCGAAGAAGTAACGAGGACGGTA 60
Query 157 ATGGAAGAGAAACCAGAACAGAAACAAAGAGGATCTCTGGAGAAAGGAAGATCGTGCAAA 216
||||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||
Sbjct 61 ATGGAAGAGAAACCAGAACAGCAGCAGAGAGGATCTCTTGAGAAAGGAAGATCGTGCAAA 120
Query 217 GGCTATTTATATTACTCTTCCACTCTCAAATCCAAGTCTAAGAACCCTCGCTGCGTCGGA 276
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 GGCTATTTATATTACTCTTCCACTCTCAAATCCAAGGCTAAGAACCCTCGCTGCGTCGGT 180
Query 277 ATCCCTCGTACTCTCCGTCAAGTTCCTGATTATGTTGTTGGACAATCTGAAGCTGAAGCT 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCCCTCGTACTCTCCGTCAAGTTCCTGATTATGTTGTTGGACAATCTGAAGCTGAAGCT 240
Query 337 TCTAAAGAAGGAAGGACCTTAGCTGATTTTTACTATGGATGTTTGGGTTATTCCGTCTAC 396
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TCTAAAGAAGGAAGGACCTTAGCTGATTTTTACTATGGATGTTTGGGATATTCCGTCTAC 300
Query 397 ATGACTGATAAAGACTCATCTGCCATTAAGCAACATACAAAGACTCAACTTCCCGTTTGT 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGACTGATAAAGACTCATCTGCCATTAAGCAACATACAAAGACTCAACTTCCCGTTTGT 360
Query 457 GTCGGTCTTGAGATATTAGCAGATAGAAGAGCAGCTTCTGGCAATACTTCATCTGTTCCA 516
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCGGTCTTGAGATACTAGCAGATAGAAGAGCAGCTTCTGGCAATACTTCATCTGTTCCT 420
Query 517 GCCCGTGTCCAAAATAGAAAAGATTCTCGGGAGGTGCCT-GTGCCTCAGCACCAGAA-CA 574
|||||||| |||| ||||| |||||||||||||||||| | || ||| |||| || |
Sbjct 421 GCCCGTGTTCAAAGTAGAAGTGATTCTCGGGAGGTGCCTCG-GCAGCAGAACCATAAACC 479
Query 575 ATAAACCAGC-CTCTGCCACT-GCCACTGCCACAAACACAGAAAACGGCTTCTTAACCAG 632
| | ||||| | | || || ||||||||||||||||||||||| |||||| |||| ||
Sbjct 480 AGCA-CCAGCAC-CAGC-ACCAGCCACTGCCACAAACACAGAAAATGGCTTCCTAACGAG 536
Query 633 GTTCACAAGAAACGCAAACCTGGTTGCAGCAGGGGTGATGAAGAACATGAAGAGAGTTGG 692
||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 537 GTTCACAAGAAACGCAAGCCTGGTAGCAGGAGGGGTGATGAAGAACATGAAGAGAGTAGG 596
Query 693 TAACTATGTGAAAGAAACTGTGGATGATTCCTTGGACCCATATCGCAAGCGACCAAAATA 752
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 597 TAACTATGTGAAAGAAACTGTGGACGATTCCTTGGACCCATATCGGAAGCGACCAAAATG 656
Query 753 AAGAAACTTTTT-ACATTAGATGTGGAGACAACAAACC-Caaaaaaaa-TGACCGACAGA 809
|||||||||||| ||||||||||||||||||| | || ||||||||| |||| ||||||
Sbjct 657 AAGAAACTTTTTTACATTAGATGTGGAGACAA-AC-CCTCAAAAAAAAATGACAGACAGA 714
Query 810 CGACAGGATATGAAATCTTATTTGACACTTTTTTGGATTCTCTT 853
|||||||| || | || |||||||||||||||||||||
Sbjct 715 CGACAGGA---GA--T-TT----GACACTTTTTTGGATTCTCTT 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5