BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51130.1
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485467 jgi|Araly1|485467|fgenesh2_kg.5__1459__AT3G51130.1 2278 0.0
> Ahg485467 jgi|Araly1|485467|fgenesh2_kg.5__1459__AT3G51130.1
Length=1480
Score = 2278 bits (1233), Expect = 0.0
Identities = 1374/1440 (95%), Gaps = 17/1440 (1%)
Strand=Plus/Plus
Query 51 TCTTCTATTCAGGAAATTGATCCAACAAATGAAAGATTACTCGAAGATCGGCGATAAACT 110
|||||| |||| |||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 26 TCTTCTGTTCAAGAAACTGATCCAACAAATGAAAGATTACTCGAAGATCGGCGACAAACT 85
Query 111 TGTGATGCAGAGACCTAGACGACGTTTGGAAGGCACCGCCATGGGCGCCACCGTGTTCGA 170
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 86 GGTGATGCAGAGACCTAGACGACGATTGGAAGGCACCGCCATGGGCGCCACCGTGTTCGA 145
Query 171 TCTCCGTCCCGGCGTCGGCATCGGACCTTTCTCTATCGGAATGCCGATTTGTGAAGCATT 230
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 146 TCTCCGTCCCGGCGTCGGCATCGGACCTTTCTCTATCGGGATGCCGATTTGTGAAGCATT 205
Query 231 TGCTCAAATAGAGCAGCAGCCTAACATATATGATGTTGTTCATGTTAAATACTACGACGA 290
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 206 TGCTCAAATAGAGCAGCAGCCTAACATATATGACGTTGTTCATGTTAAATACTACGACGA 265
Query 291 GGATCCTTTGAAACTGGATGTTGTTATTAGCTTTCCAGATCATGGGTTTCATCTTCGATT 350
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 266 GGATCCTTTGAAACTGGATGTTGTCATTAGCTTTCCGGATCATGGGTTTCATCTTCGATT 325
Query 351 TGATCCCTGGTCTCAGAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGAT 410
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 326 TGATCCCTGGTCTCAGAGGTTACGGCTTGTTGAGATATTTGATGTCAAGCGGCTTCAGAT 385
Query 411 GCGCTACGCCACTTCTATGATTGGGGGTCCATCAACTCTGGCAACGTTTGTGGCTGTTTA 470
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 386 GCGCTACGCCACTTCTATGATTGGGGGTCCATCAACTCTGGCCACGTTTGTCGCTGTTTA 445
Query 471 TGCACTTTTTGGACCAACCTTTCCTGGGATTTATGATAAAGAAAGAGGGATTTATTCTCT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TGCACTTTTTGGACCAACCTTTCCTGGGATTTATGATAAAGAAAGAGGGATTTATTCTCT 505
Query 531 GTTCTACCCGGGGCTATCCTTCGAGTTTCCAATTCCAAACCAGTACACGGACTGCTGCCA 590
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 506 GTTTTACCCGGGACTATCCTTCGAGTTTCCAATTCCAAACCAGTACACAGACTGCTGCCA 565
Query 591 TGATGGAGAAGCGGCACTACCGTTAGAGTTTCCAGATGGCACCACACCAGTAACATGCCG 650
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 566 TGATGGAGAAGCGGCACTACCATTAGAGTTTCCTGATGGCACCACACCAGTAACATGCCG 625
Query 651 GGTCTCTATATATGACAACTCAAGTGACAAAAAAGTTGGTGTCGGAAAATTGATGGATAG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 GGTCTCTATATATGACAACTCAAGTGACAAAAAAGTTGGTGTCGGAAAATTGATGGATAG 685
Query 711 AGCTTCTGTTCCTCCTCTACCTCCTGGCAGTCTGTATATGGAAGAAGTTCATGTCAAGCC 770
|||||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||
Sbjct 686 AGCTTCTGTTCCTCCTTTACCTCCTGGCAGTCTGTATATGGAAGAGGTCCATATCAAGCT 745
Query 771 TGGCAAGGAACTATACTTTACTGTTGGAGGCCAGCATATGCCTTTTGGTGCATCACCACA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TGGCAAGGAACTATACTTTACTGTTGGAGGCCAGCATATGCCTTTTGGTGCATCACCACA 805
Query 831 GGATGTATGGACTGAATTAGGTCGACCTTGTGGGATCCACCCAAAGCAGGTAGATCAAAT 890
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 806 GGATGTATGGACTGAATTAGGTCGACCATGTGGGATTCACCCAAAGCAGGTAGATCAAAT 865
Query 891 GGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTA 950
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 866 GGTTATTCATTCCGCTTCAGATCCACGACCAAAAACAACTATCTGTGGTGATTACTTTTA 925
Query 951 CAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGACTCACAAAGTTAAAAA 1010
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 926 CAACTATTTTACTCGTGGTTTGGACATCCTGTTTGACGGCGAGACTCACAAGGTTAAGAA 985
Query 1011 GTTTGTTCTTCACACCAACTATCCGGGTCATGCTGATTTCAACTCATACATAAAGTGCAA 1070
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 986 GTTTGTTCTTCACACCAACTATCCCGGTCATGCTGATTTCAACTCATACATAAAGTGCAA 1045
Query 1071 CTTTGTGATTTC-GGCTGGAGCGGATGCGGCAGAAGCAAACAGAAGTGGAAACAAGATCA 1129
|||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 1046 CTTTGTGATTTCTGG-TGGAGAGGATGGGGCAGAAGCAAACAGAGGTGGAAACAAGATCA 1104
Query 1130 CTCCAAGCACTAACTGGGATCAGGTCAAGGAAATACTCGGGGAATGTGGGCCAGCAGCTA 1189
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1105 CTCCAAGCACTAATTGGGATCAGGTCAAGGAAATACTGGGGGAATGTGGCCCAGCAGCTA 1164
Query 1190 TTCAGACGCAAGGCTCAACGAGCAACCCTTTTGGATCTACATATGTGTATGGCTATCAGA 1249
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1165 TTCAGACGCAAGGCTCAACGAGCAACCCTTTTGGATCCACATATGTGTATGGCTATCAGA 1224
Query 1250 ATGTTGCTTTTGAGGTGATGAAGAACGGTCATATAGCCACTATAACCTTGTTCCAGTCAT 1309
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1225 ATGTTGCTTTTGAGGTGATGAAGAACGGTCATATAGCCACCATAACCTTGTTCCAGTCAT 1284
Query 1310 GATGCGTAT-CCACCGCTGAGGGGCTCAAGATGCTATCTTCAACCAGACTCTGTAAATCT 1368
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1285 GATGTGTATACCACCGCTGAGGGGCTCAAGAGGCTATCTTCAACCAGACTCTGTAAATCT 1344
Query 1369 AACGTCACAAGAAGCTACGAAAACTATCGATGATACCAAAAACGACAAATGTTGTACAGT 1428
|||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1345 AACGTCACAAGAAGATACGAAAACTATGGATGATACCAAAAACTACAAGTGTTGTACAGT 1404
Query 1429 TATACATTTGTCTAGTTACTATCACCCGGGTTAT-A--A-TAACAGTTATTCTGGTTATA 1484
| | |||||||||||||| || |||| | | ||||||||| ||||||||||
Sbjct 1405 TG--C------CTAGTTACTATCAC--GGATTATTATTAATAACAGTTACTCTGGTTATA 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58849428525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5