BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51140.1
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485468 jgi|Araly1|485468|fgenesh2_kg.5__1460__AT3G51140.1 1812 0.0
Ahg912730 jgi|Araly1|912730|Al_scaffold_0001_2984 69.4 8e-11
> Ahg485468 jgi|Araly1|485468|fgenesh2_kg.5__1460__AT3G51140.1
Length=1450
Score = 1812 bits (981), Expect = 0.0
Identities = 1261/1388 (91%), Gaps = 52/1388 (4%)
Strand=Plus/Plus
Query 188 CTTCTATCCGTTGCGTAGCAAGGTTTTGTCTTTCGTGTATGGTTCCGGGAAGG--AA--- 242
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 88 CTTCTATCCGTTGCGTAGCAAGGTTTTGTCTTTCGTGTATGGTTCCGGGAAGGAAAAGGG 147
Query 243 AAG-GG-GAAGTGGATTGTTTTCATCGGCGATAAGTCTCTTCTCCTCTGGGATTGAGGTT 300
||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 148 AAGTGGTGTTGTGGATTGCTTTCATCGGCGATAAGTCTCTTCTCCTCTGGGATTGAGGTT 207
Query 301 GGTGGTGTGAGGTAAAGCTTCGGTAGTTAGAGATGAATGCGTCCGGCTTAACTGTTACTC 360
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 208 GGTGGTGTGAGGGAAAGCTTCGGTAGTTAGAGATGAATGCGTCCGGGTTAACTGTTACTC 267
Query 361 CGCCCAGATTTCACTTTCGATGGCGTTCTGATCGTTTTGGTACATCTCAGAGAAGCTCTC 420
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 268 CGCCCAGATTTCACTTTCGATGGCGTTCAGATCGTTTCGGTACATCTCAGAGAAGCTCTC 327
Query 421 AAGCTTTTACTGTTCTTAGCAAATTGAATAATCGAAATTCCGCTTGGCCTGTTCTTAAAA 480
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 328 AAGCTTTTACTGTTCTTAGCAAACTGAATAATCGAAGTTCCCCTTGGCCTGTTCTTAAAA 387
Query 481 GTTCTCGTTTGGCGCTTCCTACACAAAGAAGAAATGCTATGATCACTCGTGCCATGAGTG 540
||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 388 GTTCTTGTTTGGCACTTCCTACGCAAAGAAGCAATGCTATGATCACTCGTGCCATGGGTG 447
Query 541 CTTCCTTTGGTGATATGGCAGACGATTC-A---G--CTGCTATCTTCCCTCGGATCAATG 594
||||||||||||||||||||||| |||| | | | ||| |||| |||||||||||||
Sbjct 448 CTTCCTTTGGTGATATGGCAGACCATTCAACTGGTTCAGCTGTCTTTCCTCGGATCAATG 507
Query 595 TCAAAGACCCATATAAACGGCTTGGGATAAGCCGGATGGCCTCAGAGGATGAGATTCAAG 654
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 508 TCAAAGACCCATATAAACGGCTTGGGATAAGCAGGATGGCCTCAGAGGACGAGATTCAAG 567
Query 655 GAGCGAGGAACTTTCTCATTCAGCAATACGCAGGGCACAAACCCAGTGTTGATGCAATCG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GAGCGAGGAACTTTCTCATTCAGCAATACGCAGGGCACAAACCCAGTGTTGATGCAATCG 627
Query 715 AATCAGCTCATGACAAGATTATCATGCAGAAGTTTCATGAGAGGAAAAACCCCAAGATTG 774
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 628 AATCAGCTCATGACAAGATTATCATGCAGAAGTTTCATGAGCGGAAAAACCCCAAGATTG 687
Query 775 ACATATCGAAAAAGGTTCGCCAAGTGAGGCAGTCCAAAGTTGTCAACTTTGTTTTCGAGA 834
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 ACATATCTAAAAAGGTCCGCCAAGTGAGGCAGTCCAAAGTTGTCAACTTTGTTTTCGAGA 747
Query 835 GATTCCAAACTCCTCCCAATGCAGTCCTTGTCAAAACAGCAGTCACGTTTGCAGTTCTTG 894
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 748 GATTCCAAACTCCTCCCACTGCAGTCCTTGTCAAAACAGCAGCCACGTTTGCAGTTCTTG 807
Query 895 GCGTTCTAACCGTTCTGTTCCCGACAGAAGAAGGACCGACCTTGCAGGTTTTGTTATCAC 954
|| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 808 GCATTCTAACCGTTCTGTTCCCGACAGAAGAAGGACCGACTTTGCAGGTTGCGTTATCAC 867
Query 955 TAATAGCTACCTTTTACTTCATCCACCAAAGGCTCCAGAAGAAGCTCTGGACTTTCCTTT 1014
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 868 TAATAGCTACCTTTTACTTCATCCACCAAAGGCTGAAGAAGAAGCTCTGGACTTTCCTTT 927
Query 1015 ACGG-AGCGGGAGCTTTCATCTTCTCGTGGCTGGTTGGGACTTTCTTGATGGTATCTGTG 1073
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 ACGGGACCGG-AGCTTTCATCTTCTCGTGGCTGGTTGGGACTTTCTTGATGGTATCTGTG 986
Query 1074 ATCCCACCGTTCATCAAAGGACCAAGAGGTTTTGAAGTCATGTCTTCGCTCCTAAGCTAT 1133
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 987 ATCCCACCGTTCATCAAAGGACCAAGAGGTTTCGAAGTCATGTCTTCGCTCCTAAGCTAC 1046
Query 1134 GTTTTGCTTTGGGTCGCTTCGAGTTACCTCCGGTAGCGTGCTAGCTTTTTTCTTTTCCCC 1193
|||||||||||||| |||||||| || |||||||||||| |||||| |||||||||||||
Sbjct 1047 GTTTTGCTTTGGGTGGCTTCGAGCTATCTCCGGTAGCGTTCTAGCTATTTTCTTTTCCCC 1106
Query 1194 GTCTTTTGGGCCAGAAATTCAAGTGTTATCTCGGATATATGAAAACACACGAACAGAGAA 1253
||||||||| || |||||| |||||||||||||||||||||||| | | || | | |
Sbjct 1107 TTCTTTTGGGTCACAAATTCTAGTGTTATCTCGGATATATGAAAA-A-A--AA-AT-GCA 1160
Query 1254 AAAATGCATCATTTTCATGTGACagagagagagagagagagagagaTATGATTTGTGGTC 1313
| |||| ||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 1161 ----T-CATC-TTTTCATGTGACATAGAGAGAGAGAGAGAGAGA--TATGATTTTTGGTC 1212
Query 1314 TTGGAGTTG-TTATTTCACGGAGACCTCATTAACTTTCAAAGCTCAGTTTCCAAGTTGTG 1372
||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1213 TTGGAGTTGCTT-TTTCACGAAGACCTCCCTAACTTTCAAAGCTCAGTTTCCAAGTTGAC 1271
Query 1373 GCTACAAACAAAGAATAGTAAGAGTTGATTACGGAAATTAGTCGGATACTAGTCTGATT- 1431
| | | ||| || |||||| |||||||||||||| ||||| ||| || | |||
Sbjct 1272 GATTTGAGGAAAAAAAAGTAAGCGTTGATTACGGAAAGTAGTCTGATT-TACCC--ATTG 1328
Query 1432 TCATAGGAAT--TAGGAAACATGGCCTCATAGCA-CATCATGTGCTGTCTCATACATAAT 1488
| | | ||| |||||||||||||||||| || ||||||| ||||||||||| || |
Sbjct 1329 TTAAAAGAAAAATAGGAAACATGGCCTCAT--CATCATCATGGGCTGTCTCATA-AT--T 1383
Query 1489 AACTATGGCTGCATGATTTTGTCCATGGCCTCAT--T---AT-A--TGTGCATGGCCCTC 1540
| ||||||||||||| |||||||||||| ||||| | || | ||||||||||||||
Sbjct 1384 A-CTATGGCTGCATGGTTTTGTCCATGGTCTCATACTCTCATTACATGTGCATGGCCCTC 1442
Query 1541 TTATTTAT 1548
| ||||||
Sbjct 1443 TCATTTAT 1450
Score = 141 bits (76), Expect = 2e-32
Identities = 84/88 (95%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 36 aaaaaaaGCTCCGTCGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCT 95
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAGCTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCT 60
Query 96 AACCAGCTAGACTACGACGGAATGTTGC 123
|||||||||||||| ||||| ||||||
Sbjct 61 GACCAGCTAGACTACAACGGATTGTTGC 88
> Ahg912730 jgi|Araly1|912730|Al_scaffold_0001_2984
Length=528
Score = 69.4 bits (37), Expect = 8e-11
Identities = 53/60 (88%), Gaps = 4/60 (7%)
Strand=Plus/Plus
Query 25 ttgaaaaaaca-aaaaaaaG--CTCCGTCGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 81
||| ||||| | || ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 470 TTG-AAAAAGATAAGAAAAGCTCTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5