BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51150.2
Length=3785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485469 jgi|Araly1|485469|fgenesh2_kg.5__1461__AT3G51150.1 2924 0.0
Ahg496975 jgi|Araly1|496975|fgenesh2_kg.8__2791__AT5G66310.1 1343 0.0
Ahg929419 jgi|Araly1|929419|scaffold_301876.1 54.7 5e-06
> Ahg485469 jgi|Araly1|485469|fgenesh2_kg.5__1461__AT3G51150.1
Length=3470
Score = 2924 bits (1583), Expect = 0.0
Identities = 1800/1900 (95%), Gaps = 33/1900 (2%)
Strand=Plus/Plus
Query 12 tttttttGAAAACACCTGAATTATTTTTTATCGCTGTAGCGAAAGCGAAATAGGTCGCCT 71
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2 TTTTTTTGAAAACACCTGAATTATTTTTT-TCGCTGTAGCG-AAGCGAAATAGGTCGCCT 59
Query 72 GAG----AAATCTCTGGTTTCTCCGAATCGCCT-C-CT-TAGCATCGTTCCTCCGTCGGA 124
||| |||||||||||||||||||||||||| | | | | |||||||||||||||||
Sbjct 60 GAGAAATAAATCTCTGGTTTCTCCGAATCGCCTACGTTGTTGGATCGTTCCTCCGTCGGA 119
Query 125 ACACCGTCGCTTCTGCCATTGTTCTCCATCTCGCATTTGGTCTCGTTTCTCAGATTTCCA 184
|||||||||| ||||||||||||||||| ||| | | || ||| | ||||||
Sbjct 120 ACACCGTCGCATCTGCCATTGTTCTCCA--TCG----T--T-TC---TCT-A-ATTTCCG 165
Query 185 TACCTCATTCGCTGATTCGCAG-AGACATGTGTAAGTAGTCACAAA-CTTTGTTTCCTCA 242
|||||||||||| | ||| | || || ||||||||||||| ||| |||||||||||||
Sbjct 166 TACCTCATTCGCAGTTTC-TTGTAGGCAGGTGTAAGTAGTCA-AAAGCTTTGTTTCCTCA 223
Query 243 CTGTGCACATGGAGTTACCAAAGATTCTTGGCTCCACATTGAACATTCTGCAGAAACGGC 302
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 224 C--TGCACATGGAGTTACTAAAGATTCTTGGCTCCACATTGAACATTCTGCAGAAACGGC 281
Query 303 TGTGATTATTATAATATCAAATCTGTTAAGGATGCGGGAAGGGAGGTGACGGGTGAAGAT 362
|||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct 282 TGTGATTATTATAATATCAACTCTGTTGAGGATGCGGGAAGGGAGGTGACAGGTGAAGAT 341
Query 363 GGGTATAGGAGAGGATCAGATGCAAGGATCGAGTGGTAGGGAAGAGAAGATTTTTGTTTC 422
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 342 GGGTATTGGAGAGGATCAGATGCAAGGGCCGAGTGGTAGGGAAGAGAAGATTTTTGTTTC 401
Query 423 TGTTCGTCTGAGGCCATTAAATGTGAGAGAAAGGGCAAGGAATGATGTGGCAGATTGGGA 482
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 402 TGTTCGTCTGAGGCCATTAAATGTGAAAGAAAGGGCAAGGAATGATGTGGCAGATTGGGA 461
Query 483 GTGTATCAATGATGAAACGGTCATATACAGGAGTCATCTCTCTATATCAGAGCGTTCCAT 542
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 462 GTGTATCAATGATGAAACGGTCATATACAGGAGCCATCTCTCTATATCAGAGCGTTCCAT 521
Query 543 GTACCCCACTGCATACACATTTGACAGAGTGTTTGGCCCTGAGTGTTCTACCAGGGAGGT 602
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GTACCCCACTGCGTACACATTTGACAGAGTGTTTGGCCCTGAGTGTTCTACCAGGGAGGT 581
Query 603 GTATGATCAAGGGGCGAAGGAAGTGGCTCTCTCTGTTGTCAGTGGGGTTCATGCTAGTGT 662
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 GTATGATCAAGGGGCTAAGGAAGTGGCTCTCTCTGTTGTCAGTGGGGTTCATGCTAGTGT 641
Query 663 CTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACTATGATTGGTATTACGGATTA 722
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 642 CTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACTATGAGTGGAATTACTGATTA 701
Query 723 TGCCTTGGCTGATATATATGATTACATTGAGAAGCACAATGAAAGAGAATTCATTCTGAA 782
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 702 CGCCTTGGCCGATATATATGATTACATTGAGAAGCACAATGAAAGAGAATTCATTTTGAA 761
Query 783 GTTCTCAGCCATGGAGATCTATAATGAGTCTGTAAGAGACCTCTTGAGTACAGACATTAG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GTTCTCAGCCATGGAGATCTATAATGAGTCTGTAAGAGACCTCTTGAGTACAGACATTAG 821
Query 843 TCCACTCAGAGTTCTAGATGATCCTGAGAAAGGAACAGTTGTCGAGAAACTCACGGAGGA 902
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 822 TCCACTCAGACTTCTAGATGATCCTGAGAAAGGAACAGTTGTTGAGAAACTCACGGAGGA 881
Query 903 AACTCTGCGGGACTGGAATCATTTTAAGGAGCTTTTATCAATCTGTATAGCTCAACGGCA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 882 AACTCTGCGGGACTGGAATCATTTTAAGGAGCTTTTATCAATCTGTATAGCTCAACGACA 941
Query 963 AATTGGAGAGACAGCTTTAAATGAAGTTAGTTCCCGCTCTCATCAGATTCTGAGATTGAC 1022
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 942 TATTGGAGAGACAGCTTTAAATGAAGTTAGCTCCCGCTCTCATCAGATTCTGAGATTGAC 1001
Query 1023 AGTTGAAAGCACAGCACGTGAATATTTGGCGAAGGATAAATTTAGTACACTCACAGCGAC 1082
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1002 AGTTGAAAGCACAGCACGTGAATATTTGGCGAAGGATAAATTTAGTACTCTCACAGCGAC 1061
Query 1083 AGTGAATTTCATTGATCTTGCTGGAAGTGAACGTGCATCTCAATCATTATCAGCTGGCAC 1142
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1062 AGTGAATTTCATTGATCTTGCTGGAAGTGAACGTGCATCTCAATCATTATCAGCCAGCAC 1121
Query 1143 AAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCG 1202
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AAGGTTGAAAGAAGGTTGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCG 1181
Query 1203 AAAGCTAAGTAAAGGAAAAAATGGGCACATTCCATTCAGAGATTCAAAGCTGACACGCAT 1262
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1182 AAAGCTAAGTAAAGGAAAAAATGGGCACATTCCATTCAGAGATTCAAAACTGACACGCAT 1241
Query 1263 ACTTCAGACTTCCTTGGGAGGAAACGCCAGAACTTCCATAATCTGCACACTGAGTCCTGC 1322
||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct 1242 ACTTCAGTCTTCCTTGGGAGGAAATGCCAGAACAGCCATAATCTGCACACTAAGTCCTGC 1301
Query 1323 AAGAGTACACGTTGAGCAATCAAGAAACACATTGTTATTCGCAAGCTGTGCAAAGGAGGT 1382
|||| |||| ||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1302 AAGAATACATGTTGAGCAATCTAGAAACACATTGTTATTTGCGAGCTGTGCAAAGGAGGT 1361
Query 1383 GACAACAAATGCACAAGTCAACGTCGTCATGTCTGATAAAGCTCTGGTTAGACATTTACA 1442
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1362 GACAACAAATGCACAAGTCAACGTCGTCATGTCTGATAAAGCTCTGGTTAAACATTTACA 1421
Query 1443 GAGAGAATTGGCTAAACTGGAGAGCGAGTTGAGCAGCCCTCGTCAAGCTCTTGTTGTGTC 1502
|||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1422 GAGAGAGTTGGCTAAATTGGAGAGTGAGTTGAGCAGCCCTCGTCAAGCTCTGGTTGTGTC 1481
Query 1503 TGACACAACTGCATTACTGAAGGAGAAAGACCTCCAAATCGAAAAGCTAAATAAAGAGGT 1562
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1482 TGACACAACTGCATTACTGAAGGATAAAGACCTCCAAATCGAAAAGCTAAATAAAGAGGT 1541
Query 1563 ATTCCAACTAGCACAAGAATTAGAGAGGGCTTATTCTCGGATTGAGGATCTTCAACAGAT 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 ATTCCAACTAGCACAAGAATTAGAGAGGGCTTATTCTCGGATTGAGGATCTTCAACAGAT 1601
Query 1623 TATTGGAGAAG-CACCACAACAAGAGATATTATCAACAGACTCAGAACAGACAAACACAA 1681
||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1602 TATTGAAGAAGGC-CCACAAAAAGAGATATTATCAACAGACTCAGAACAGACAAACACAA 1660
Query 1682 ATGTGGTTCTGGGACGTCAGTACCCCAAGTTACGGGTGCGTAGTTCATGGGAGTCTCTAA 1741
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 1661 ATGTGGTTCTGGGACGTCAGTACCCCAAGCTGCGTGTGCGTAGTTCATGGGAGTCTCTAA 1720
Query 1742 ATATAACACCAGAGAGTCCC-CTATCAGCGCAAGCGTCCATTATGATTTCCCCACAATCA 1800
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1721 ATATAACACCAGAAAG-CCCTCTATCAGCGCAAGCGTCCATTATGATTTCCCCACAATCA 1779
Query 1801 ACCGAGCATGGTTCTGACGAGAATGTTTTCCAGCTTTCAGACTTGAGGTTGAATTCGGGT 1860
||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 1780 ACCGAACATGGTTCTGACGAGAATGTTTTCCAGCTTGCAGACTTTAGGTTAAATTCGGGT 1839
Query 1861 GCAAGTAGTCCAGCTCAACACCTTGCGTTTGTAACTCCTG 1900
|||||||||||||| ||||| ||| |||||||||||||||
Sbjct 1840 GCAAGTAGTCCAGCCCAACATCTTACGTTTGTAACTCCTG 1879
Score = 1899 bits (1028), Expect = 0.0
Identities = 1219/1307 (93%), Gaps = 29/1307 (2%)
Strand=Plus/Plus
Query 2223 agaaacagaagaa-aaagaggaagaagaagaagaaagagttaaggaagTCAGTAGTGTCT 2281
|||||| |||||| ||| | | ||||||||||||||||| |||||||||||||||||||
Sbjct 2091 AGAAACTGAAGAAGAAA-A-G--GAAGAAGAAGAAAGAGTGAAGGAAGTCAGTAGTGTCT 2146
Query 2282 CTATCCAAACAAAGGAGAAAAGTGGACCGATCAAAGTCTCTCCACGCTGTGTTTTGTCAC 2341
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CTATCCAACCAAAGGAGAAAAGTGGACCGATCAAAGTCTCTCCACGCTGTGTTTTGTCAC 2206
Query 2342 TTACTGACGAATCATTTCCGGATGAGTCTTCTAACCTCAAAAGAGACCCAACACATCAAG 2401
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 2207 TTACTGACGAATCATATCCTCATGAGTCTTCTAACCTCAGAAGAGACCCAACACATCAAG 2266
Query 2402 ATTTTGTCACTCCGTCTCCTGAAAAGCTTTATGCTTGGCATCTTGAGAGTAATGGGCAAA 2461
||||||||||||| ||||||||||||| | ||||||||||||||||||| ||| |||||
Sbjct 2267 ATTTTGTCACTCCATCTCCTGAAAAGCCTCATGCTTGGCATCTTGAGAGAAATTCGCAAA 2326
Query 2462 CGGCGGGAGGCACGGGGTTTACTAGAAGCCGAAGCTGCGGAGCAAGCTTTGTATCAAGCT 2521
| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 CAGCTGGAGGCATGGGGTTTACTAGAAGCCGAAGCTGCGGAGCAAGCTTTGTATCAAGCT 2386
Query 2522 CTTCCTTTTCTCTGTCTGAGAGAGATGCTAACACACCACCATGCTGGTATCAGAATGAAA 2581
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2387 CTTCCTTTTCTATGTCTGAGAGAGATGCTAACACACCACCAAGCTGGTATCAGAATGAAA 2446
Query 2582 GAGCTGAGAGCAACCTGAAACCGTCCAACAGCAAGAGGCCACCATTGCCAAAGCATATTA 2641
|||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 2447 GAGCTGAGAGCAACCTGAAACCGTACAACAACAAGAGGCCACCATTGCCAAATCATATTA 2506
Query 2642 GCCGGATGAGCATGCCAGCAACTTGGTTCGAGAAAGACTTCAACCACACCCAAAGAATGC 2701
|||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 2507 GCCGGATGAGCATGCCAGCAACTTGGTTCGAGAAAGACTTTTT--A--------GA-TG- 2554
Query 2702 CAGCTGGTTTAGATGGTGTTAATATGATAAAGTCATCACCGAATGGATCACAGGTTTCTA 2761
| |||| | | | |||| || |||||||||||| ||||||||||||||||||
Sbjct 2555 --G-TGGT---G-T--T---AATAAGAGAAAGTCATCACCAAATGGATCACAGGTTTCTC 2602
Query 2762 CCTCTAAATCTCATGTGTATGCACGCCAGACAAGTGGTAGAGCTTTAATCAGCCAAGACG 2821
|||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2603 CCTCTAAATCTCTTCTGTATGCACGCCAGACAAGTGGTAGAGCTTTAATCAACCAAGACG 2662
Query 2822 AAGGTGAAGAGACTGTTCCTCAGAGGGACAAGCGAATCATTCACCTATCGATGGAGGAGA 2881
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2663 AAGGTGAAGAGACTGTTCCTCAAAGGGACAAGCGAATCATTCACCTATCGATGGAGGAGA 2722
Query 2882 TAGAGCAAAAATTCTTGGCTCTAAGATCGTCAAAGAGTTTCAAGGACGCTGCGGTTGACC 2941
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2723 TAGAGCAAAAGTTCTTGGCTCTAAGATCGTCAAAGAGTTTCAAGGACGCTGCGGTTGACC 2782
Query 2942 CAATACAAGACTATTTAACCATGCCATTGAACTGGCCGTTGGAGTTCAAAAGACTCGAGA 3001
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2783 CCATACAAGACTATTTAACCATGCCATTGAACTGGCCGTTGGAATTCAAGAGACTCGAGA 2842
Query 3002 TGGAGATAATAGAGCTATGGCATGCTTGCAACGTTTCCTTGTCACACAGAAGTTACTTCT 3061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2843 TGGAGATAATAGAGCTATGGCATGCTTGCAACGTTTCCTTGTCACACAGAAGTTACTTCT 2902
Query 3062 TCCTTCTCTTCAGAGGAGATCAGAAAGATTGCTTGTACATGGAGGTCGAACTCCGTAGGC 3121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2903 TCCTTCTCTTCAGAGGAGATCAGAAAGATTGCTTGTACATGGAGGTCGAACTCCGTAGGC 2962
Query 3122 TCAAGTACATCAGAGAAACCTTTACCCACAATAACAAAGCTATTGAAAATGGACGCACTC 3181
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2963 TCAAGTACATCAGAGAAACCTTTACCCACAATAACAAAGCTATAGAAAACGGACGCACTC 3022
Query 3182 TTACATCAATGTCCAGCCTGAGGGCGTTGAACAGGGAGAGGTACAAGCTGAGTCAGCTGA 3241
|||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||
Sbjct 3023 TTACATCAATGTCCAGCCTGAGGGCGTTAAACAGGGAGAGGTATAAGCTAAGTCAGATGA 3082
Query 3242 TGCAGAAGAAACTGACGAAAGAGGAGAGAGAGAACGTGTTCTTGAGATGGGGTATTGGGC 3301
|||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||
Sbjct 3083 TGCAGAAGAAACTGACGAAAGAAGAGAGAGAGAACTTGTTCTTGAGATGGGGCATTGGGC 3142
Query 3302 TGAATACAAAGCACAGACGGCTCCAACTGGCACATCGTCTCTGGTCAGAGAGCAAAGATA 3361
|||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct 3143 TGAACACAAAGCACAGGCGGCTCCAGCTGGCGCATCGTCTCTGGTCAGAAAGCAAAGACA 3202
Query 3362 TGGATCATGTCCGAGAGAGCGCCTCAGTTGTGGGAAAGCTCATGGGGTTCGTGGACATGG 3421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3203 TGGATCATGTCCGAGAGAGCGCCTCAGTTGTGGGAAAGCTCATGGGGTTCGTGGACATGG 3262
Query 3422 ATTTGGCATCCAAGGAAATGTTTGGCCTCAACTTCTCACTTAGACCCCGTGCCAAGAAAT 3481
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 3263 ATTTGGCGTCCAAGGAAATGTTTGGCCTCAACTTCTCTCTTAGACCCCGTCCCAAGAAAT 3322
Query 3482 CTAGCCTTTGGAAACGCAGCGTTTTGTCGCTCTCTATTTTGTAATTA 3528
||||||| |||||||||||||||||||| || || | ||||||||||
Sbjct 3323 CTAGCCTATGGAAACGCAGCGTTTTGTCACTATCCAATTTGTAATTA 3369
Score = 383 bits (207), Expect = 6e-105
Identities = 232/244 (95%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 1981 GATCAGTCTCGTGTTCAGGGGGAACGATTGCATGAAATGGACGAACCAAGTGAGGTGGAT 2040
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1879 GATCAGTCTCGTGTTCAGGAGGAACGATTTCATGAAATGGACGAACCAAGTGAGGTGGAT 1938
Query 2041 TCTGAAGATACCTGCACGGAACTTCAATGCATAGAAACAGAGAGTCCTGGTATCATCATG 2100
||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1939 TCTGAAGATACTTGCACGGAACATCAATGCATAGAAACAGAGAGTCCCGGTATCATCATG 1998
Query 2101 TATCCAGAGCCAAATATACTTCCAGACCGGTGTAAGGCTGTGAGTGCACTACCATTATGT 2160
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1999 TATCCAGAGCCAAACATACTTCCAGACCGGTGTAAGGCTGTGAGTGCACTACCAATATGT 2058
Query 2161 GAACCAGAGTCaaagaac-tcaagaccaccaacagaaactgcagaagaaaaagaagaaaa 2219
|||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||| |
Sbjct 2059 GAACCAGAGTCAAAGAACGT-AAGACCACCAACAGAAACTGAAGAAGAAAAGGAAGAAGA 2117
Query 2220 agaa 2223
||||
Sbjct 2118 AGAA 2121
Score = 154 bits (83), Expect = 5e-36
Identities = 96/102 (94%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 3564 ACTAAATTAAAAGTGGTGTGGCTTCTGTGAGAAGTACATTCACAAATCTAAATTTGATTT 3623
||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 3370 ACTGAATTGAAAGTGGTGTGGCTTCTGTGAGAAGTACATTCACAAATGTAAATT-GATTT 3428
Query 3624 GGGTCTGAGACTGAGATTGAGCAGTCTCAAATGTAAAATTTT 3665
|| |||||||||||||||||||| ||||||||||||||||||
Sbjct 3429 GGATCTGAGACTGAGATTGAGCAATCTCAAATGTAAAATTTT 3470
> Ahg496975 jgi|Araly1|496975|fgenesh2_kg.8__2791__AT5G66310.1
Length=3362
Score = 1343 bits (727), Expect = 0.0
Identities = 1305/1578 (83%), Gaps = 64/1578 (4%)
Strand=Plus/Plus
Query 353 GGGT-GAAGATGGGTATAG--GA-GAGGATCAGATGCAAGGATCGAGTGGTAGGGAAGAG 408
|||| ||||||| || || || || ||||||||| |||| | || || | || ||
Sbjct 196 GGGTAGAAGATGACTACAGAAGATGATGATCAGATGTTAGGACCAAGCGGCACTGAGGAA 255
Query 409 AAGATTTTTGTTTCTGTTCGTCTGAGGCCATTAAATG-TGAGAGAAAGGGCAAGGAATGA 467
||||||| ||||||||||||| || | || ||||| | || |||| | ||||||||
Sbjct 256 AAGATTTATGTTTCTGTTCGTATGCGCCCTTTAAACGACAAG-GAAAAGTTTAGGAATGA 314
Query 468 TGTGGCAGATTGGGAGTGTATCAATGATGA-AACGGTCATATACAGGAGTCATCTCTCTA 526
||| | || |||||||| ||||| || | || |||| |||||||| ||||| ||||
Sbjct 315 TGTCCCGGACTGGGAGTGCATCAACAAT-ACTACCATCATTTACAGGAGCCATCTTTCTA 373
Query 527 TATCAGAGCGTTCCATGTACCCCACTGCATACACATTTGACAGAGTGTTTGGCCCTGAGT 586
| || |||||||||||||| || |||| ||||||||||||||||||||| ||||||| |
Sbjct 374 TCTCTGAGCGTTCCATGTATCCTTCTGCTTACACATTTGACAGAGTGTTTAGCCCTGATT 433
Query 587 GTTCTACCAGGGAGGTGTATGATCAAGGGGCGAAGGAAGTGGCTCTCTCTGTTGTCAGTG 646
||| ||| ||| |||| ||||| |||||||| |||||||| ||| |||| ||||||||||
Sbjct 434 GTTGTACGAGGCAGGTCTATGAACAAGGGGCAAAGGAAGTCGCTTTCTCCGTTGTCAGTG 493
Query 647 GGGTTCATGCTAGTGTCTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACTATGA 706
| ||| |||||||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct 494 GCGTTAATGCTAGTGTATTTGCATATGGGCAAACAAGCAGTGGAAAGACTTATACAATGA 553
Query 707 TTGGTATTACGGATTATGCCTTGGCTGATATATATGATTACATTGAGAAGCACAATGAAA 766
|| ||||| || | ||||||| ||||||||||| |||||||| |||||||| ||||
Sbjct 554 GCGGAATTACTGACTGCGCCTTGGTTGATATATATGGCTACATTGACAAGCACAAGGAAA 613
Query 767 GAGAATTCATTCTGAAGTTCTCAGCCATGGAGATCTATAATGAGTCTGTAAGAGACCTCT 826
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 614 GAGAATTCATTCTTAAGTTCTCTGCCATGGAGATCTACAATGAGTCTGTAAGAGATCTCT 673
Query 827 TGAGTACAGACATTAGTCCACTCAGAGTTCTAGATGATCCTGAGAAAGGAACAGTTGTCG 886
| |||||||| | ||||||||||| | || ||||||| ||||||||||| |||||||| |
Sbjct 674 TAAGTACAGATACTAGTCCACTCAAACTTTTAGATGACCCTGAGAAAGGGACAGTTGTTG 733
Query 887 AGAAACTCACGGAGGAAACTCTGCGGGACTGGAATCATTTTAAGGAGCTTTTATCAATCT 946
|||||||||| |||||||||||||| |||||||||||||| ||||||||| |||| |||
Sbjct 734 AGAAACTCACAGAGGAAACTCTGCGAGACTGGAATCATTTCAAGGAGCTTCTATCTGTCT 793
Query 947 G-TATAGCTCAACGGCAAATTGGAGAGACAGCTTTAAATGAAGTTAGTTCCCGCTCTCAT 1005
| | |||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 794 GCGA-AGCTCAACGGCAGATTGGAGAGACAGCTCTAAATGAAGTTAGCTCCCGGTCTCAT 852
Query 1006 CAGATTCTGAGATTGACAGTTGAAAGCACAGCACGTGAATATTT-GGCGAAGGATAAATT 1064
|||||| ||||||||||||||||||||||||| ||||||| ||| | || ||||| ||
Sbjct 853 CAGATTTTGAGATTGACAGTTGAAAGCACAGCTCGTGAAT-TTTCCACCAATGATAAGTT 911
Query 1065 TAGTACACTCACAGCGACAGTGAA-TTTCATTGATCTTGCTGGAAGTGAACGTGCATCTC 1123
||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 912 TAGTACACTAACAGCAACAGTGAACTTT-ATTGATCTTGCTGGAAGTGAACGTGCATCTC 970
Query 1124 AATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAA 1183
||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 971 AATCATTATCAGCCGGTACAAGGTTGAAAGAAGGTTGTCATATAAACCGAAGTTTGTTAA 1030
Query 1184 CACTAGGAACTGTCATTCGAAAGCTAAGTAAAGGAAAAAATGGGCACATTCCATTCAGAG 1243
| || |||||||| || || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1031 CGCTGGGAACTGTGATACGTAAGCTAAGTAAAGGAAAAACTGGGCACATTCCATTCAGAG 1090
Query 1244 ATTCAAAGCTGACACGCATACTTCAGACTTCCTTGGGAGGAAACGCCAGAACTTCCATAA 1303
||||||| |||||||||||||||||| |||| ||||||||||| || |||||| ||||||
Sbjct 1091 ATTCAAAACTGACACGCATACTTCAGTCTTCTTTGGGAGGAAATGCAAGAACTGCCATAA 1150
Query 1304 TCTGCAC-ACTGAGTCCTGCAAGAGTACACGTTGAGCAATCAAGAAACACATTGTTATTC 1362
| ||||| | |||||||||| ||| | || |||||||| |||||||||||| |||||||
Sbjct 1151 TTTGCACTA-TGAGTCCTGCGAGAATCCATGTTGAGCAGTCAAGAAACACACTGTTATTT 1209
Query 1363 GCAAGCTGTGCAAAGGAGGTGACAACAAATGCACAAGTCAA-CGTCGTCATGTCTGATAA 1421
|||||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1210 GCAAGCTGCGCAAAGGAGGTGACAACAAATGCACAAGTCAATCTT-GTCATGTCTGATAA 1268
Query 1422 AGCTCTGGTTAGACATTTACAGAGAGAATTGGCTAAACTGGAGAGCGAGTTGAGCAGCCC 1481
|||| | || | ||| || ||||| || |||||||||||||| || |||||||| |||||
Sbjct 1269 AGCTTTAGTAAAACACTTGCAGAGGGAGTTGGCTAAACTGGAAAGGGAGTTGAGAAGCCC 1328
Query 1482 TCGTCAAGCTCTT-G-TTG-TGTCTGACACAACTGCATTACTGAAGGAGAAAGACCTCCA 1538
| |||| || ||| | ||| | |||||||||||||||||||||| ||||||||||||| |
Sbjct 1329 TGGTCA-GC-CTTCGGTTGCT-TCTGACACAACTGCATTACTGACGGAGAAAGACCTCGA 1385
Query 1539 AATCGAAAAGCTAAATAAAGAGGTATTCCAACTAGCACAAGAATTAGAG-AGGGCTTATT 1597
| ||||||||||| ||||||||| |||||||||||||| | ||||| | | || ||
Sbjct 1386 GGTTGAAAAGCTAAAGAAAGAGGTACTCCAACTAGCACAACAGCTAGAGCAAG-CTCGTT 1444
Query 1598 CTCG-GATTGA-GGATCTTCAACAGATTA-TTGGAGAAGC-A-----CCACAACAAGAGA 1648
| || |||| | |||||||| | ||| | ||| ||||| | ||| || |||| |
Sbjct 1445 C-CGAGATT-ATGGATCTTCGA-AGAATGGTTGAAGAAGAGAAAAAACCAGAAAAAGAAA 1501
Query 1649 TATTATCAACAGACTCAGAACAGACAAACACAAATGTGGT-TCTGGGACGTCAGTACCCC 1707
|||||||||| | | |||| | |||||| | | ||| || ||| ||||||
Sbjct 1502 CGCTATCAACAGA---A-A-CAGA-AGGGTTAAATGTTCTGT-TGGAACATCAATACCCC 1554
Query 1708 AAGTTACGGGTGCGTAGTTCATGGGAGTCTCTA-AATATAACACCAGAGAGTCCCC-TAT 1765
||| | || ||||| ||| ||||||| ||| | |||| ||||||| ||| ||| |||
Sbjct 1555 AAGCTGCGAGTGCGCAGTACATGGGACTCTG-AGAATACAACACCACTGAG-CCCTATAT 1612
Query 1766 CAGCGCAA-GCGTCCATTATGATTTCCCCACAATCAACCGAGCATGGTTCTGACGAGAAT 1824
|||| || || |||| ||| || ||| || |||||| || || ||| ||| ||||||
Sbjct 1613 CAGCTCACCGC-TCCAGTAT-ATCTCC--ACGATCAACTGAATATAGTTATGAAGAGAAT 1668
Query 1825 GT-TTTCCAGCTTTCAGACTTGAGGTT-GAATTCGGG-TGCAAGTAGTCCAGCTCAACAC 1881
|| |||| |||| ||||| || ||| | || ||| | | |||||||||| || ||||
Sbjct 1669 GTCTTTC-AGCTATCAGATTTCAGGATAGA-TTCTGCAT-CAAGTAGTCC-GC--AACAG 1722
Query 1882 CTTGCGTTTGTAACTCCT 1899
||||||||||||||||||
Sbjct 1723 CTTGCGTTTGTAACTCCT 1740
> Ahg929419 jgi|Araly1|929419|scaffold_301876.1
Length=2110
Score = 54.7 bits (29), Expect = 5e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1089 TTTCATTGATCTTGCTGGAAGTGAACGTG 1117
|||||||||||||||||||||||||||||
Sbjct 1215 TTTCATTGATCTTGCTGGAAGTGAACGTG 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143020359334
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5