BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51160.1
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937978 jgi|Araly1|937978|scaffold_502169.1 1772 0.0
> Ahg937978 jgi|Araly1|937978|scaffold_502169.1
Length=1172
Score = 1772 bits (959), Expect = 0.0
Identities = 1107/1176 (94%), Gaps = 19/1176 (2%)
Strand=Plus/Plus
Query 55 CCAGATCCGAAAACCCAACAATGGCGTCAGAGAACAACGGATCCAGATCCGATTCCGAAT 114
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2 CCAGATCCGAAAACCCAACAATGGCGTCAGAGAACAACGGATCCAGATCCGAATCCGAAT 61
Query 115 CCATCACC---GC---TCCCAAAG-C--TG--ATTCCACCGTCGTTGAACCGAGGAAGAT 163
|||||||| || | ||| | | || || || || ||| |||||||||||||
Sbjct 62 CCATCACCAAAGCTGATTCCACCGTCGTTGAAATGCCGCCATCG--CAACCGAGGAAGAT 119
Query 164 AGCTCTGATCACCGGAATCACCGGCCAGGACGGATCATACCTGACGGAGTTCCTTCTCGG 223
||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct 120 AGCTCTGATCACCGGAATCACCGGCCAAGACGGATCGTATCTGACGGAGTTGCTTCTCGG 179
Query 224 AAAAGGCTACGAAGTTCATGGTCTGATCCGTCGATCATCGAATTTCAACACCCAGCGAAT 283
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 180 AAAAGGCTACGAAGTTCATGGCCTGATCCGTCGATCATCGAATTTCAACACTCAGCGACT 239
Query 284 CAACCATATCTACATCGATCCACACAATGTCAACAAAGCTCTGATGAAACTCCACTACGC 343
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 CAACCATATCTACATCGATCCACACAATGTCAACAAAGCTCTGATGAAGCTCCACTACGC 299
Query 344 CGATCTCACCGACGCTTCCTCTCTCCGTCGTTGGATCGATGTGATCAAACCTGACGAAGT 403
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 300 CGATCTCACCGACGCTTCCTCTCTCCGTCGTTGGCTCGATGTGATCAAGCCTGACGAAGT 359
Query 404 TTATAACCTAGCTGCTCAATCTCACGTCGCTGTCTCCTTCGAGATCCCTGATTACACAGC 463
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTATAACCTAGCCGCTCAATCTCACGTCGCTGTCTCCTTCGAGATCCCTGATTACACAGC 419
Query 464 CGATGTAGTCGCAACCGGTGCTCTCCGTCTCCTTGAAGCCGTCAGATCTCACACCATCGA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGATGTAGTCGCAACCGGTGCTCTCCGTCTCCTTGAAGCCGTCAGATCTCACACCATCGA 479
Query 524 CAGTGGCCG-TACCGTCAAGTATTACCAAGCCGGATCTTCGGAGATGTTTGGATCAACTC 582
||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 CAGTGGCCGGTTT-GTCAAGTATTACCAAGCTGGATCTTCGGAGATGTTTGGATCAACTC 538
Query 583 CTCCTCCACAATCGGAGACGACGCCGTTTCACCCCAGATCTCCTTACGCAGCTTCCAAAT 642
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 539 CTCCTCCACAATCGGAGACGACGCCGTTTCATCCCAGATCGCCTTACGCAGCTTCCAAAT 598
Query 643 GCGCTGCTCATTGGTACACAGTGAATTACAGAGAGGCGTACGGTCTCTTCGCTTGTAACG 702
||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct 599 GCGCTGCTCATTGGTACACAGTGAATTACCGAGAAGCGTACGGTCTCTTCGCATGTAACG 658
Query 703 GAATCTTGTTCAATCACGAGTCACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCA 762
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAATCTTGTTCAACCACGAGTCACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCA 718
Query 763 CAAGAGCATTGGGAAGGATCAAGGTTGGTTTGCAGACGAAGCTATTCCTTGGGAATTTGC 822
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 CAAGAGCATTGGGACGTATCAAGGTTGGTTTGCAGACGAAGCTCTTCCTTGGGAATTTGC 778
Query 823 AAGCGTCAAGAGATTGGGGATTTGCAGGAGATTATGTGGAAGCAATGTGGTTGATGTTGC 882
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 AAGCGTCAAGAGATTGGGGATTTGCAGGAGACTATGTGGAAGCAATGTGGTTGATGTTGC 838
Query 883 AGCAAGAGAAGCCAGATGATTACGTTGTGGCAACAGAGGAAGGACACACAGTGGAAGAGT 942
|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 839 AGCAAGAGAAGCCAGATGATTACGTTGTTGCAACAGAGGAAGCACATACAGTGGAAGAGT 898
Query 943 TTCTTGATGTGTCATTTGGGTATTTGGGACTCAATTGGAAAGATT-ATGTTGAGATTGAC 1001
|||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||
Sbjct 899 TTCTTGATGTGTCATTTGGGTATTTGGGACTCGATTGGAA-GAATCATGTTGAGATTGAC 957
Query 1002 CAGAGGTACTTTAGGCC-TGCTGAAGTAGATAACCTTCAAGGAGATGCAAGCAAGGCAAA 1060
| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCGAGGTACTTTAGGCCAT-CTGAAGTAGATAACCTTCAAGGAGATGCAAGCAAGGCAAA 1016
Query 1061 GGAAGTGTTGGGGTGGAAACCACAAGTAGGGTTTGAGAAGCTTGTGAAGATGATGGTTGA 1120
|||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 1017 GGAAGTGTTGGGATGGAAACCAAAAGTAGGGTTTGAGACGCTGGTGAAGATGATGGTTGA 1076
Query 1121 TGAAGATCTTGAGCTTGCTAAGAGGGAGAAAGTGCTTGTTGATGCTGGATACATGGATGC 1180
||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 1077 TGAAGATCTTGCCCTTGCTAATAGGGAGAAACTGCTTGTTGATGCTGGTTACATGGATGC 1136
Query 1181 TAAGCAGCAACCTTGATTTGATCAATTATACAAAGA 1216
||||||||||||||||||||||| |||||||| |||
Sbjct 1137 TAAGCAGCAACCTTGATTTGATCTATTATACAGAGA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5