BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51171.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341755 jgi|Araly1|341755|fgenesh1_pg.C_scaffold_3001518 835 0.0
Ahg929444 jgi|Araly1|929444|scaffold_301901.1 723 0.0
Ahg929442 jgi|Araly1|929442|scaffold_301899.1 723 0.0
Ahg929484 jgi|Araly1|929484|scaffold_301941.1 497 6e-140
Ahg887299 jgi|Araly1|887299|Al_scaffold_0408_1 464 6e-130
Ahg925882 jgi|Araly1|925882|scaffold_201443.1 200 2e-50
Ahg929631 jgi|Araly1|929631|scaffold_302088.1 178 9e-44
> Ahg341755 jgi|Araly1|341755|fgenesh1_pg.C_scaffold_3001518
Length=1110
Score = 835 bits (452), Expect = 0.0
Identities = 920/1136 (81%), Gaps = 72/1136 (6%)
Strand=Plus/Plus
Query 59 CGCTTCCATGGGAGCTAGAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTT 117
||||||| || || | |||||||| ||||| ||||| ||| || || |||||||| |
Sbjct 17 CGCTTCCGTGCGAATTGGAGGAAGAAATACTCTCTCGGCTTCCA-CCTTTATCTCTTGCT 75
Query 118 CGATTCAGATCCGTTTGCAAACGA-TGGAATTATCTTTTCGATGAAAAGAGTTTCATCAA 176
|||||||||||||||||||||| | |||||| | ||| | |||| || || ||||||||
Sbjct 76 CGATTCAGATCCGTTTGCAAAC-AGTGGAATGCTATTTGCAATGAGAATAGGTTCATCAA 134
Query 177 AAACCACTTCGCTCGTGCTTGTCCTCAGTTCATCTTCATGACCGATTCCAATATTTATTC 236
|||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 135 TAACCACTTCGCTCGCGCTCGTCCTCAGTTCATCTTCATAACCAATTCCAATATTTATTC 194
Query 237 GATAGAGATCATCGGTCTCGACGGCGTTGATCCAACGATTAAGTTACGTGTGCTAGACTC 296
||||||||| ||| |||||||||| |||||||||||||||||||| || | |||| |||
Sbjct 195 GATAGAGATTATCAGTCTCGACGGGGTTGATCCAACGATTAAGTTGCGAGAGCTACCCTC 254
Query 297 CTCTGGTATCC-CTTACCGTGACTGGAAATTT-GCTTACATAACCATCACTGCTTGCGAT 354
|||| ||| || |||||||||| | | |||| | |||||||||||||||| ||||||||
Sbjct 255 CTCTCGTA-CCGCTTACCGTGAATTG-TATTTGGATTACATAACCATCACTACTTGCGAT 312
Query 355 GGGT-TCTTGTTTTGTAACTCTT-GGGCTAGTCCTAAGGGGACAGCTTTTTGGAATCCGT 412
||| ||||||||||||||| || || || ||| |||| ||||| | ||||||||||
Sbjct 313 -GGTCTCTTGTTTTGTAACTATTCGGATTA-TCCCAAGGTTACAGCACTCTGGAATCCGT 370
Query 413 GGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGGTTTCAATGTCTGTGGCTTAG 472
|||||||||| |||||||||||||||| | | |||||| ||| |||||| |||| | |
Sbjct 371 GGTTGAAACAAGTTAAATGGATCGAGTGCAATGATAAATATTTTGATGTCTCTGGCGTGG 430
Query 473 GATACGATAATACTAGAGACGGAAAGGTTTACAAAATCTTGGGGTATTTAATGTGTCGCC 532
||||||||||||||||| || |||||||||||| ||||| |||| ||| | | |
Sbjct 431 GATACGATAATACTAGACCCGAAAAGGTTTACAAGATCTTAGGGTCTTT--TATAT---- 484
Query 533 CTGAAGATGGGAGCTCTTACGTATACCACCAGAGAGTTGCGATCTACGACTGTGCCTCTC 592
| | | | || ||| | | ||||||||||||||||||| ||||||||||
Sbjct 485 C------T--G-G---TT--GTA-AAGTCGAGAGAGTTGCGATCTACGAGTGTGCCTCTC 529
Query 593 ACGCGTTCAAGTTTATTGAAAT-ATCGAACAAGGACTGGTTCC-TAA-CCGATGTTACAC 649
|||||||||||| ||||| | | ||| ||| || | | | || ||| || | |||| ||
Sbjct 530 ACGCGTTCAAGTCTATTG-ATTCATCTAACGAGCAAT-GCCCCTTAAGCC-AAGTTAAAC 586
Query 650 GATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGCTTTCTCCTATTCCCAACAC-TGAT 708
||||||||||||| |||||||||||||||||||||| | ||| ||||||| |||| | |
Sbjct 587 GATTCAGTGTGTCCTTGAACGGAAATCTCTATTGGCGTACTCGTATTCCCCACACTTTA- 645
Query 709 GACTTTCT-CATCC-AATGTTTTGATTTCTCTAGGGAGATATGCAAACCCTTTTGTCTTC 766
|||||| | ||||| || | ||||||||||| ||||| |||| ||||| ||||||||| |
Sbjct 646 GACTTT-TACATCCGAA-GCTTTGATTTCTCGAGGGATATATTCAAACACTTTTGTCTCC 703
Query 767 TTCCTTGTCG-GAAGTTTGATGCTTT--CGATTTACTTG---T--AAGTTTTCAGGGGAG 818
|||| || || | || | || ||| |||| |||||| | ||||| || |||||
Sbjct 704 TTCCGTGCCGCG-AGAATCAT--TTTCGCGATGTACTTGTTCTCGGAGTTTACAAGGGAG 760
Query 819 ATAGGTTATCCTTGTTAAAGCAATGTTATAAGACAAGGAAG-GTTGAGATTTGGGTTACG 877
||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 761 ATAGGTTGTCCTTGTTAAAGCAATGTTATGTGACAAGG-AGCGTTGAGATTTGGGTTACG 819
Query 878 AAGAATAAGATTGATACTAGTAACAACAATGGATCAGACGAAGTTGTGTGGATTCACTTG 937
||||| ||||||| | |||||||||||||||| |||||||||||||||||||| | |||
Sbjct 820 AAGAAGAAGATTG--A-TAGTAACAACAATGGAACAGACGAAGTTGTGTGGATTAAGTTG 876
Query 938 TTGACGTTGCTACCAAATAACTTGCCAAACTTAT-TTATCGAGTGTTATGGCATTAGTTA 996
||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 877 TTGACTTTGCCAACAAATAACTTGCCAAACTTATATAAT-AAGTGTTATGGCATTAGTTA 935
Query 997 CTTCATCTATGACAAGACCACCTTCATCATTTATTGTGCTGACGA-GAACACTT-AT-GC 1053
|||||||||||||||||||||| | ||||| | ||||| ||| || || | | ||
Sbjct 936 CTTCATCTATGACAAGACCACCCTAATCATGTGTTGTGGTGAAGATGATGG-TGGAACGC 994
Query 1054 GG-CTTGCATCTA--TATTGTCAGGGGAGATTTGCTCAAGAAGTTTGTAATTGACACCAT 1110
|| ||| |||||| |||||||||| |||||||| |||||||| || |||||| |
Sbjct 995 GGGCTTTCATCTACATATTGTCAGGAGAGATTTGTTCAAGAAGATTCCAATTGATTCTGG 1054
Query 1111 GGTTTTCTGTTGTTAT-AGCTGTGTTTATGCTCCCAATTTTATCCCCCTTCCTTTA 1165
||||||| | |||| | | |||| |||||||||| ||||||||||| ||||||||
Sbjct 1055 GGTTTTCCGGTGTTGTCA-CTGTCTTTATGCTCCGAATTTTATCCCGGTTCCTTTA 1109
> Ahg929444 jgi|Araly1|929444|scaffold_301901.1
Length=1159
Score = 723 bits (391), Expect = 0.0
Identities = 888/1119 (79%), Gaps = 69/1119 (6%)
Strand=Plus/Plus
Query 76 GAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTTCGATTCAGATCCGTTTG 134
|||||||||||||| ||||| ||| || || | ||||||| ||| |||||||| |||||
Sbjct 54 GAGGAAGATATACTCTCTCGGCTTCCA-CCTCTCTCTCTTGCTCGTTTCAGATCAGTTTG 112
Query 135 CAAACGATGGAATTATCTTTTCGATGAAAAGAGTTTCATCAAAAACCAC-TTCGCTCGTG 193
||||| ||||||| |||||||| | ||||| || |||||||| ||||| || || || |
Sbjct 113 CAAACTATGGAATGATCTTTTCAACGAAAATAGGTTCATCAACGACCACTTTGGC-CGCG 171
Query 194 CTTGTCCTCAGTTCATCTTCA-T-GACCGATTCCAATATTTATTCGATAGAGATCATCGG 251
| | ||||| |||||||| | | || | |||||||||||||||||||||| |||||||
Sbjct 172 CCCGGCCTCAATTCATCTT-ACTGGA-CAATTCCAATATTTATTCGATAGAAATCATCGA 229
Query 252 TCTCGACGGCGTTGATCCAACGATTA-AGTTACGTGTGCTAGACTCCTCTGGTATCCCTT 310
| | |||||| |||||||||| | || | || |||| ||||| |||||||||||| ||||
Sbjct 230 TTTAGACGGCATTGATCCAACCA-TAGAATTGCGTGAGCTAGCCTCCTCTGGTATTCCTT 288
Query 311 ACCGTGACTGGAAATTT-GCTTACATAACCATCACTGCTTGCGATGGGTTCTTGTTTTGT 369
|||| || | | |||| | | ||| |||||||||| |||||||||||||||||||||||
Sbjct 289 ACCGGGAAT-TAGATTTGGATCACACAACCATCACTACTTGCGATGGGTTCTTGTTTTGT 347
Query 370 AAC-TCTTGGGCTAGTCCTAAGGGGACAGCTTTTTGGAATCCGTGGTTGAAACAGGTTAA 428
||| | || | | | ||||||||||||| |||||||||||||||||| |||||||||
Sbjct 348 AACTTTTTTGTTTCG-GCTAAGGGGACAGCACTTTGGAATCCGTGGTTGAGACAGGTTAA 406
Query 429 ATGGATCGAGTACGAGGATAAAG-GTTTCAATGTCTGTGGCTTAGGATACGATAATACTA 487
||||||||||||||||||||||| ||| | |||| | |||||||||||||||||||||||
Sbjct 407 ATGGATCGAGTACGAGGATAAAGAGTT-CTATGTTTTTGGCTTAGGATACGATAATACTA 465
Query 488 GAGACGGAAAGGT-TTACAAAATCTTGGGGTATTTAATGTGTCGCCCTGAAGATGG-GAG 545
| || ||| || ||||| ||||| |||||||| || ||| | | ||| | |||
Sbjct 466 TAC-CGAAAAAGTATTACAGGATCTTTGGGTATTTTGTGCGTCATCGTCAAG-TCCAGAG 523
Query 546 CTCTTACGTAT-ACCACCAGAGAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGT 604
| | || |||||||||||||||| || ||||| |||| ||||| ||||| ||||
Sbjct 524 -----A-G-ATTACCACCAGAGAGTTGCCATTTACGAGTGTGTGTCTCAAGCGTTTAAGT 576
Query 605 TTATTGAAATATC-GAACAAGGACTGGTTCC-TAAC-CGATGTTACACGATTCAGTGTGT 661
|||||| | | | || | |||||||| || ||| | | | ||||||| | |||||
Sbjct 577 ATATTGATACACCTGA-CGAGGACTGGC-CCATAAAGCAA-GCTACACGAGGAAATGTGT 633
Query 662 CTTTGAACGGAAATCTCTATTGGCTTTCTCCTATTCCCAACACTGATGACT-TTCTCATC 720
| ||||||||||||||||||||| || || || |||||||||| |||| | || ||||
Sbjct 634 CCTTGAACGGAAATCTCTATTGGGTTGCTTGTAATCCCAACACTCATGAGTATTA-CATC 692
Query 721 CAATGTTTTGATTTCTCTAGGGAGATA-TGCAAACCCTTTTGTCTT-CTTCCTTGTCGGA 778
||| | ||||||||||| ||||| ||| | |||| | |||||||| || || ||| |||
Sbjct 693 CAAAGCTTTGATTTCTCGAGGGATATAGT-CAAAGCTTTTTGTCTCACT-CCGTGTAGGA 750
Query 779 AGTTT-GATGCTTTCGATTTACTTGTA-----AGTTTTCAGGGGAGATAGGTTATCCTTG 832
|| ||| || |||| ||||| | |||||| | ||||||| |||| ||||||
Sbjct 751 AGAACCGAT-CTCGCGATGTACTTTTCCTCTCAGTTTTTAAGGGAGATGGGTTTTCCTTG 809
Query 833 TTAAAGCAATGTTATAAGACAAGGAAG-GTTGAGATTTGGGTTACGAAGAATAAGATTGA 891
||||||||||||||| |||||||| | || |||||||||||||||||||| ||||||||
Sbjct 810 TTAAAGCAATGTTATGTGACAAGGA-GCGTCGAGATTTGGGTTACGAAGAAGAAGATTGA 868
Query 892 TACTAGTAACAACAATGGATCAGACGA-AGTTGTGTGGATTCACTTGTTGACGTTGCTAC 950
||||||||||||| |||| || || | ||||||||||| |||| ||| |||| |
Sbjct 869 TACTAGTAACAACGGTGGAG-AG--GATA-TTGTGTGGATTAACTTAATGATTTTGCCAA 924
Query 951 CAAATAACTTGCCAAACTTATTTA-TCGAGTGTTATGGCATTAGTTACTTCATCTATGAC 1009
||| ||||||||||| |||| ||| | ||| ||||||||||||||| ||||||||||||
Sbjct 925 CAACTAACTTGCCAAGCTTAATTAATA-AGTTTTATGGCATTAGTTATTTCATCTATGAC 983
Query 1010 AAGACCACC-TTCATCATTTATTGT-GCTGACGA-GAACACTT-ATGCGGCTTGCATCTA 1065
||||||||| || ||||| | |||| | |||||| ||| | | | || ||||||||||
Sbjct 984 AAGACCACCCTT-ATCATGTGTTGTTG-TGACGATGAAAA-TAGA-GCCACTTGCATCTA 1039
Query 1066 TATTGTCAGGGGAGATTTGCTCAAGAAGTTTGTAATTGACACCATGGTTTTCT-GTTGTT 1124
|||||| |||||||||||| |||||||| || ||| | | ||||||| || |||
Sbjct 1040 TATTGTTAGGGGAGATTTGTTCAAGAAGATTCAAATCAATTCTGGGGTTTTCCAGT-GTT 1098
Query 1125 AT-AGCTGTGTTTATGCTCCCAATTTTATCCCCCTTCCT 1162
| | ||||||||||||||||||||| ||||| || |||
Sbjct 1099 GTCA-CTGTGTTTATGCTCCCAATTTGATCCCGCT-CCT 1135
> Ahg929442 jgi|Araly1|929442|scaffold_301899.1
Length=1159
Score = 723 bits (391), Expect = 0.0
Identities = 888/1119 (79%), Gaps = 69/1119 (6%)
Strand=Plus/Plus
Query 76 GAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTTCGATTCAGATCCGTTTG 134
|||||||||||||| ||||| ||| || || | ||||||| ||| |||||||| |||||
Sbjct 54 GAGGAAGATATACTCTCTCGGCTTCCA-CCTCTCTCTCTTGCTCGTTTCAGATCAGTTTG 112
Query 135 CAAACGATGGAATTATCTTTTCGATGAAAAGAGTTTCATCAAAAACCAC-TTCGCTCGTG 193
||||| ||||||| |||||||| | ||||| || |||||||| ||||| || || || |
Sbjct 113 CAAACTATGGAATGATCTTTTCAACGAAAATAGGTTCATCAACGACCACTTTGGC-CGCG 171
Query 194 CTTGTCCTCAGTTCATCTTCA-T-GACCGATTCCAATATTTATTCGATAGAGATCATCGG 251
| | ||||| |||||||| | | || | |||||||||||||||||||||| |||||||
Sbjct 172 CCCGGCCTCAATTCATCTT-ACTGGA-CAATTCCAATATTTATTCGATAGAAATCATCGA 229
Query 252 TCTCGACGGCGTTGATCCAACGATTA-AGTTACGTGTGCTAGACTCCTCTGGTATCCCTT 310
| | |||||| |||||||||| | || | || |||| ||||| |||||||||||| ||||
Sbjct 230 TTTAGACGGCATTGATCCAACCA-TAGAATTGCGTGAGCTAGCCTCCTCTGGTATTCCTT 288
Query 311 ACCGTGACTGGAAATTT-GCTTACATAACCATCACTGCTTGCGATGGGTTCTTGTTTTGT 369
|||| || | | |||| | | ||| |||||||||| |||||||||||||||||||||||
Sbjct 289 ACCGGGAAT-TAGATTTGGATCACACAACCATCACTACTTGCGATGGGTTCTTGTTTTGT 347
Query 370 AAC-TCTTGGGCTAGTCCTAAGGGGACAGCTTTTTGGAATCCGTGGTTGAAACAGGTTAA 428
||| | || | | | ||||||||||||| |||||||||||||||||| |||||||||
Sbjct 348 AACTTTTTTGTTTCG-GCTAAGGGGACAGCACTTTGGAATCCGTGGTTGAGACAGGTTAA 406
Query 429 ATGGATCGAGTACGAGGATAAAG-GTTTCAATGTCTGTGGCTTAGGATACGATAATACTA 487
||||||||||||||||||||||| ||| | |||| | |||||||||||||||||||||||
Sbjct 407 ATGGATCGAGTACGAGGATAAAGAGTT-CTATGTTTTTGGCTTAGGATACGATAATACTA 465
Query 488 GAGACGGAAAGGT-TTACAAAATCTTGGGGTATTTAATGTGTCGCCCTGAAGATGG-GAG 545
| || ||| || ||||| ||||| |||||||| || ||| | | ||| | |||
Sbjct 466 TAC-CGAAAAAGTATTACAGGATCTTTGGGTATTTTGTGCGTCATCGTCAAG-TCCAGAG 523
Query 546 CTCTTACGTAT-ACCACCAGAGAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGT 604
| | || |||||||||||||||| || ||||| |||| ||||| ||||| ||||
Sbjct 524 -----A-G-ATTACCACCAGAGAGTTGCCATTTACGAGTGTGTGTCTCAAGCGTTTAAGT 576
Query 605 TTATTGAAATATC-GAACAAGGACTGGTTCC-TAAC-CGATGTTACACGATTCAGTGTGT 661
|||||| | | | || | |||||||| || ||| | | | ||||||| | |||||
Sbjct 577 ATATTGATACACCTGA-CGAGGACTGGC-CCATAAAGCAA-GCTACACGAGGAAATGTGT 633
Query 662 CTTTGAACGGAAATCTCTATTGGCTTTCTCCTATTCCCAACACTGATGACT-TTCTCATC 720
| ||||||||||||||||||||| || || || |||||||||| |||| | || ||||
Sbjct 634 CCTTGAACGGAAATCTCTATTGGGTTGCTTGTAATCCCAACACTCATGAGTATTA-CATC 692
Query 721 CAATGTTTTGATTTCTCTAGGGAGATA-TGCAAACCCTTTTGTCTT-CTTCCTTGTCGGA 778
||| | ||||||||||| ||||| ||| | |||| | |||||||| || || ||| |||
Sbjct 693 CAAAGCTTTGATTTCTCGAGGGATATAGT-CAAAGCTTTTTGTCTCACT-CCGTGTAGGA 750
Query 779 AGTTT-GATGCTTTCGATTTACTTGTA-----AGTTTTCAGGGGAGATAGGTTATCCTTG 832
|| ||| || |||| ||||| | |||||| | ||||||| |||| ||||||
Sbjct 751 AGAACCGAT-CTCGCGATGTACTTTTCCTCTCAGTTTTTAAGGGAGATGGGTTTTCCTTG 809
Query 833 TTAAAGCAATGTTATAAGACAAGGAAG-GTTGAGATTTGGGTTACGAAGAATAAGATTGA 891
||||||||||||||| |||||||| | || |||||||||||||||||||| ||||||||
Sbjct 810 TTAAAGCAATGTTATGTGACAAGGA-GCGTCGAGATTTGGGTTACGAAGAAGAAGATTGA 868
Query 892 TACTAGTAACAACAATGGATCAGACGA-AGTTGTGTGGATTCACTTGTTGACGTTGCTAC 950
||||||||||||| |||| || || | ||||||||||| |||| ||| |||| |
Sbjct 869 TACTAGTAACAACGGTGGAG-AG--GATA-TTGTGTGGATTAACTTAATGATTTTGCCAA 924
Query 951 CAAATAACTTGCCAAACTTATTTA-TCGAGTGTTATGGCATTAGTTACTTCATCTATGAC 1009
||| ||||||||||| |||| ||| | ||| ||||||||||||||| ||||||||||||
Sbjct 925 CAACTAACTTGCCAAGCTTAATTAATA-AGTTTTATGGCATTAGTTATTTCATCTATGAC 983
Query 1010 AAGACCACC-TTCATCATTTATTGT-GCTGACGA-GAACACTT-ATGCGGCTTGCATCTA 1065
||||||||| || ||||| | |||| | |||||| ||| | | | || ||||||||||
Sbjct 984 AAGACCACCCTT-ATCATGTGTTGTTG-TGACGATGAAAA-TAGA-GCCACTTGCATCTA 1039
Query 1066 TATTGTCAGGGGAGATTTGCTCAAGAAGTTTGTAATTGACACCATGGTTTTCT-GTTGTT 1124
|||||| |||||||||||| |||||||| || ||| | | ||||||| || |||
Sbjct 1040 TATTGTTAGGGGAGATTTGTTCAAGAAGATTCAAATCAATTCTGGGGTTTTCCAGT-GTT 1098
Query 1125 AT-AGCTGTGTTTATGCTCCCAATTTTATCCCCCTTCCT 1162
| | ||||||||||||||||||||| ||||| || |||
Sbjct 1099 GTCA-CTGTGTTTATGCTCCCAATTTGATCCCGCT-CCT 1135
> Ahg929484 jgi|Araly1|929484|scaffold_301941.1
Length=1133
Score = 497 bits (269), Expect = 6e-140
Identities = 512/624 (82%), Gaps = 38/624 (6%)
Strand=Plus/Plus
Query 568 GTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGGAC 627
|||||||| ||||| ||| ||||||| ||||||||||||||||| | | | ||| |||||
Sbjct 460 GTTGCGATATACGATTGTACCTCTCAAGCGTTCAAGTTTATTGATACACCTAACGAGGAC 519
Query 628 TGGTTCC-TAACCGATGTTAC-ACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGC 685
||| ||| ||||||||||| | ||||| ||||||||| |||||||||||||||||||||
Sbjct 520 TGG-TCCATAACCGATGTT-CAACGATCCAGTGTGTCCTTGAACGGAAATCTCTATTGGA 577
Query 686 TTTCTCCTATT-CC--CAACA-CTGA------TGACTTTCTCATCC-AATGTTTTGATTT 734
||||||||||| || ||| | ||| ||| |||||||||| || | ||||||||
Sbjct 578 TTTCTCCTATTCCCGTCAA-ATTTGATTTTTGTGAATTTCTCATCCGAA-GCTTTGATTT 635
Query 735 CTCTAGGGAGATATGCAAACCCTTTTGTCTTCTTCCTTGTCGGAAGTTTGATGCTTT-CG 793
||| ||||| |||| ||||||||||||||| ||||| ||||||||| | ||| ||| ||
Sbjct 636 CTCGAGGGATATATTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAGATGGAT-TTTTGCG 694
Query 794 ATTTACTTG---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTATA 848
||||||||| | ||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 695 ATTTACTTGTCCTCCAAGTTTTCAATGAAAATAGGTTATCCTTGTTAAAGCAATGTTATA 754
Query 849 AGACAAGGAAGGTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAATG 908
|||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 755 AGACAAGGAAGGTTGAGATTTGGGTTACGAAGAAGGAGATTGATTCTAGTAACTACAACA 814
Query 909 GATCAG-ACGAAGTTGTGTGGATTCA-CTTGTTGACGTTGCTACCAAATAACTTGCCAAA 966
| | | | ||||||||||||||| | ||||||||| || | | ||| ||||||||||||
Sbjct 815 G-TGGGGAGGAAGTTGTGTGGATT-AGCTTGTTGACTTTTCCATCAAGTAACTTGCCAAA 872
Query 967 CTTATTTA-TCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCA 1025
| ||| || | || |||| | ||||||||||||||||||||||||||||||| | ||||
Sbjct 873 CCTATGTAATA-AGCGTTACGACATTAGTTACTTCATCTATGACAAGACCACCCTAATCA 931
Query 1026 TTTATTGTGCTGACGA-GAACACTT-ATGCGGCTTGCATCTATATTGTCAGGGGAGATTT 1083
| | ||||| |||||| | | | | | ||||||||||||||||||||||||||||
Sbjct 932 TGTGTTGTGGTGACGATGGAGG-TGGAACCC-CTTGCATCTATATTGTCAGGGGAGATTT 989
Query 1084 GCT-CAAGAAGTTTGTAATTGACACCATGGTTTTCTGTTGTTAT-AGCTGTGTTTATGCT 1141
|| ||||||| || |||| || | ||||||| | |||| | | |||| ||||||||
Sbjct 990 -CTTCAAGAAGATTCAAATTAACTCTGGGGTTTTCCGGTGTTGTCA-CTGTATTTATGCT 1047
Query 1142 CCCAATTTTATCCCCCTTCCTTTA 1165
|||||||| ||||| ||||||||
Sbjct 1048 CCCAATTTCATCCCGGTTCCTTTA 1071
Score = 348 bits (188), Expect = 6e-95
Identities = 299/350 (85%), Gaps = 17/350 (5%)
Strand=Plus/Plus
Query 34 AAAAAATAACCAGAGGTAATGGTTCCGCTTCCATGGGAGCTAGAGGAAGATATACTGTCT 93
|||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 4 AAAAAAGAAACAGAGCTAATGGTTCCGCTTCCACGGGAGCTAGAGGAAGATATACTCTCT 63
Query 94 CGACTTGCAGCCCAATCTCTTGTTCGATTCAGATCCGTTTGCAAACGATGGAATTATCTT 153
|| ||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 64 CGGCTTCCAGCTCAATCTCTTGTTCGATTCAGATCCGTTTGCAAACGTTGGAATGCTCTT 123
Query 154 TTCGATGAAAAGAGTTTCATCAAAAACCACTTCGCTCGTGCTTGTCCTCAGTTCATCTTC 213
||| |||||||| |||||||||| ||||||| ||||| ||| ||||||||||||||| |
Sbjct 124 TTCTATGAAAAGGGTTTCATCAACCACCACTTTGCTCGCGCTCGTCCTCAGTTCATCTGC 183
Query 214 ATGACCGATTCCAATATTTATTCGATAGAGATCATCGGTCTCGACGGCGTTGATCCAACG 273
|||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 184 ATGACCAATTCCAATATTTATTCGATAGATATCATCGGTCTCGACGGCGTAGATCCTACG 243
Query 274 ATTAAGTTACGTG-TGCTAGACTCCTCTGGTATCCCTTACCGTGACTGGAAATTTGCTT- 331
||||| || | || | || | || ||| | || |||| | || ||||||| | ||
Sbjct 244 ATTAATTTGCTTGAT-CT-GCCT--TCTAA-A-CC-TTAC--T-ACCGGAAATTGGATTT 293
Query 332 -A-C---ATAACCATCACTGCTTGCGATGGGTTCTTGTTTTGTAACTCTT 376
| | |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 294 TAACTGCATAAGCATCACTACTTGCGATGGGTTCTTGTTTTGTAACTCTT 343
Score = 86.1 bits (46), Expect = 6e-16
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 388 AAGGGGACAGCTTTTTGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGAT 447
||||||||||| | ||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 382 AAGGGGACAGCGCTCTGGAATCCGTGGTTGAAACAGGTTAAATGGAACGATTTTGAGGAT 441
Query 448 AAAGGTTTCAATGTCTGTG 466
|||| ||| ||| |||||
Sbjct 442 AAAGATTTTGATGCCTGTG 460
> Ahg887299 jgi|Araly1|887299|Al_scaffold_0408_1
Length=1044
Score = 464 bits (251), Expect = 6e-130
Identities = 466/564 (83%), Gaps = 37/564 (7%)
Strand=Plus/Plus
Query 563 AGAGAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAAT-ATCGAAC 621
||||||||||||||||||| |||||||||||||||||||||| ||||| | | ||| |||
Sbjct 479 AGAGAGTTGCGATCTACGAGTGTGCCTCTCACGCGTTCAAGTCTATTG-ATTCATCTAAC 537
Query 622 AAGGACTGGTTCC-TAA-CCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCT 679
|| | | | || ||| || | |||| ||||||||||||||| ||||||||||||||||
Sbjct 538 GAGCAAT-GCCCCTTAAGCC-AAGTTAAACGATTCAGTGTGTCCTTGAACGGAAATCTCT 595
Query 680 ATTGGCTTTCTCCTATTCCCAACAC-TGATGACTTTCT-CATCC-AATGTTTTGATTTCT 736
|||||| | ||| ||||||| |||| | | |||||| | ||||| || | ||||||||||
Sbjct 596 ATTGGCGTACTCGTATTCCCCACACTTTA-GACTTT-TACATCCGAA-GCTTTGATTTCT 652
Query 737 CTAGGGAGATATGCAAACCCTTTTGTCTTCTTCCTTGTCG-GAAGTTTGATGCTTT--CG 793
| ||||| |||| ||||| ||||||||| ||||| || || | || | || ||| ||
Sbjct 653 CGAGGGATATATTCAAACACTTTTGTCTCCTTCCGTGCCGCG-AGAATCAT--TTTCGCG 709
Query 794 ATTTACTTG---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTATA 848
|| |||||| | ||||| || |||||||||||| |||||||||||||||||||||
Sbjct 710 ATGTACTTGTTCTCGGAGTTTACAAGGGAGATAGGTTGTCCTTGTTAAAGCAATGTTATG 769
Query 849 AGACAAGGAAG-GTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAAT 907
||||||| || ||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 770 TGACAAGG-AGCGTTGAGATTTGGGTTACGAAGAAGAAGATTG--A-TAGTAACAACAAT 825
Query 908 GGATCAGACGAAGTTGTGTGGATTCACTTGTTGACGTTGCTACCAAATAACTTGCCAAAC 967
||| |||||||||||||||||||| | |||||||| |||| | |||||||||||||||||
Sbjct 826 GGAACAGACGAAGTTGTGTGGATTAAGTTGTTGACTTTGCCAACAAATAACTTGCCAAAC 885
Query 968 TTAT-TTATCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCAT 1026
|||| | || ||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 886 TTATATAAT-AAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCCTAATCAT 944
Query 1027 TTATTGTGCTGACGA-GAACACTT-AT-GCGG-CTTGCATCTA--TATTGTCAGGGGAGA 1080
| ||||| ||| || || | | |||| ||| |||||| |||||||||| ||||
Sbjct 945 GTGTTGTGGTGAAGATGATGG-TGGAACGCGGGCTTTCATCTACATATTGTCAGGAGAGA 1003
Query 1081 TTTGCTCAAGAAGTTTGTAATTGA 1104
|||| |||||||| || ||||||
Sbjct 1004 TTTGTTCAAGAAGATTCCAATTGA 1027
> Ahg925882 jgi|Araly1|925882|scaffold_201443.1
Length=859
Score = 200 bits (108), Expect = 2e-50
Identities = 571/782 (73%), Gaps = 81/782 (10%)
Strand=Plus/Plus
Query 337 ACCATCACTGCTTGCGATGGGTTCTTGTTTTGTAACTCTTGGGCTAGTCCTAAGGGGACA 396
|||||||| |||||||||||||| |||||| || ||| || || || | |||| |
Sbjct 39 ACCATCACCGCTTGCGATGGGTTATTGTTTCGTGACT-TTTGG-AAG--C-AAGGTG-TT 92
Query 397 GCTTTTTGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGG-TTT 455
|| |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 93 GCGGTTTGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTT 152
Query 456 CAATGTCTGTGGCT-TAGGATACGATAATACTAGAGACGGAAAG-GTTTACAAAATCTTG 513
| || | || || | |||||||||||| | || | || |||| | |||||| ||||||
Sbjct 153 C-ATTTTTGCGG-TGTAGGATACGATAGTTGTAAACCCGAAAAGAG-TTACAAGATCTTG 209
Query 514 GGGTA-TTTAATGTGTCGCCCTGAAGAT--GGGAGCTCTTA-C--GTATA-CCACCAG-A 565
||||| |||||| |||| || | ||| | | || | |||| | ||| | ||| | |
Sbjct 210 GGGTATTTTAAT-TGTCTCCGTAAAG-TCAGCGA-CACTTACCATGTA-AGTTACC-GCA 264
Query 566 GAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGG 625
|||||||||| ||||| ||| | ||||| ||||| ||||| ||||| | || |
Sbjct 265 GAGTTGCGATTTACGAGTGTTCGTCTCATGCGTTGAAGTTCATTGATGCCCCTTTCACGC 324
Query 626 ACTGGTTCCTAACCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGC 685
| ||| || | | ||| ||| | | |||| |||||||| |||||||||||||
Sbjct 325 AGTGG--CC-CATC-ATG--GCAC----C--TTTGTCCTTGAACGGGAATCTCTATTGGC 372
Query 686 TTTCTCCT-ATTCCCAACACTGATGACT-TTCTCATCC-AATGTTTTGATTTCTCTAGGG 742
|| ||| | | || | ||| || | | || |||||| || | ||||||||||| | ||
Sbjct 373 TTACTCATGA-ACCTGAGACTTATAAGTATT-TCATCCGAA-GCTTTGATTTCTCCAAGG 429
Query 743 AGATATGCAAACCCTTTTGTCTTCTTCCTTGTCGGAAG-TTTGATGCTTTCGATTTACTT 801
|||||| |||||| |||||||| || || |||| ||| | | || ||| ||||
Sbjct 430 AGATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAAGAACCG-TTCTCGAGATGAACTT 488
Query 802 G---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTAT-AAGACAAG 855
| | ||||| | ||||| |||| || ||||||||||||||| || | ||| |
Sbjct 489 GTCCTCGCGGTTTTTAAAAGAGATCGGTTTTCGTTGTTAAAGCAATGTAATGTA-ACAGG 547
Query 856 GAAGGTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAATGGATCAGA 915
|||| |||| |||||||| |||||| |||| ||| | | |||| |||
Sbjct 548 GAAGATTGATATTTGGGTAACGAAG---AAGA-AGAT--T-G--------ATGG---AGA 589
Query 916 CGAAGTTGTGTGGATTCACTTGTTGACGTTGCTACCAAATAACTTGCCAAACTT-ATTTA 974
||||| |||||||| ||||| |||| |||| | ||| ||||||| | || || || |
Sbjct 590 GGAAGTAGTGTGGATAAACTTGATGACTTTGCCAACAACTAACTTGTCTAAGTTGGTTAA 649
Query 975 TCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCATTTATTGTG 1034
| ||| || ||||||||||||||||||||||||||||||| | | ||||| | |||||
Sbjct 650 T-AAGTTTTGTGGCATTAGTTACTTCATCTATGACAAGACC-C-TA-ATCATGTGTTGTG 705
Query 1035 -CTGACGAG-AACACTT-ATGCGGCTTGCATCTATATTGTCAGGGGAGATTTGCTCAAGA 1091
| ||| | || ||| | || |||||||||||| |||| | ||||||| | ||||||
Sbjct 706 GC-GACCACCAA-ACTGGA-GCCGCTTGCATCTATTTTGTGAAGGGAGATATATTCAAGA 762
Query 1092 AG 1093
||
Sbjct 763 AG 764
> Ahg929631 jgi|Araly1|929631|scaffold_302088.1
Length=823
Score = 178 bits (96), Expect = 9e-44
Identities = 543/745 (73%), Gaps = 85/745 (11%)
Strand=Plus/Plus
Query 60 GCTTCCATGGGAGCTAGAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTTC 118
|||||| ||||| | |||||||| ||||||| ||| ||| || || | |||||||||||
Sbjct 35 GCTTCCGTGGGATTTGGAGGAAGAGATACTGTGTCGGCTTCCA-CCTCGATCTCTTGTTC 93
Query 119 GATTCAGATCCGTTTGCAAACGA-TGGAATTATCTTTTCGATGAAAAGAG-TTTCATCAA 176
| ||||||||||| || |||| | ||||| |||||||| | || ||||| ||| ||||
Sbjct 94 GGTTCAGATCCGTATGTAAAC-ACTGGAACGATCTTTTCTACGATAAGAGCTTT-GTCAA 151
Query 177 AAACCACTTCG-CTCGTGCTTGT-CCTCAGTTCATCTTCATGACCGATTC---CAATATT 231
||| ||||| | |||| | || || || ||||||||| ||||||| || || ||
Sbjct 152 AAAGCACTT-GAGTCGTACCCGTACC-CAATTCATCTTCCTGACCGAATCGAAGAAGATG 209
Query 232 TATTCGATAGAGATCATCGGTCTCGACGGCGTTGATCCAACGATTA-AGTTACGTGTGCT 290
|| ||||| ||| ||||| | | | |||| | ||||| || || | |||| |||
Sbjct 210 TACTCGAT--AGA-CATCGATAT-G--GGCG--G----AACGA-TAGAGGTGCGTGAGCT 256
Query 291 AGACTCCTCTG-GTATCCCT-T-A-CC-GTG-ACTGGAAATTTGCTTACATAACCATCAC 344
| |||| || | || | | | || || | |||| | |||| ||| ||||
Sbjct 257 --A-TCCTATGATTTTCATTGTCAGCCTATGAAGACGAAA--T--TTAC--AACTATCA- 306
Query 345 T-GCTTGCGATGGGTTCTTGTTTTGT-AACTCTTGGGCTAGTCCTAAGGGGACAGCTTTT 402
| |||||||||||||| |||||| || || | || || | | |||| | || ||
Sbjct 307 TGGCTTGCGATGGGTTATTGTTTCGTGAAAT-TT-GG--A-AAC-AAGGTG-TTGCGGTT 359
Query 403 TGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGGTTTCAATGTC 462
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||| || |
Sbjct 360 TGGAATTCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTCCATATT 419
Query 463 TGTGGCT-TAGGATACGATAATACTAGAGACGGAAAGGTTTACAAAATCTTGGGGTAT-T 520
| ||| | |||||||||||| | |||| || ||||| |||||| |||||||||||| |
Sbjct 420 TTTGG-TGTAGGATACGATAGTTGTAGACCCGAAAAGGGTTACAAGATCTTGGGGTATAT 478
Query 521 TAATGTGTCGCCCT-GAAGATG-G-GAGCTCT-TAC-G-TA--T-ACCACCAGAGAGTTG 571
|||| ||| || | || | | | || |||| | | | || | | || | | |||||
Sbjct 479 TAAT-TGTATCCGTAGA-G-TCAGCGA-CTCTCTCCAGGTAGGTTATGAC-A-A-AGTTG 531
Query 572 CGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGGACTGGT 631
|||||||||| ||||| ||||| ||||| ||||||||||| | | ||| |||||
Sbjct 532 CGATCTACGAGTGTGCTTCTCAGGCGTTGAAGTTTATTGATACCCCTTTCAACCACTGGC 591
Query 632 TCCTAACCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGCTTTCTC 691
|| | || | | | | | || ||| | | |||||| ||||| ||||||||| |||
Sbjct 592 -CC-A-CCAAGGAT-C-C--TT---TGTC-CGT-GAACGGGAATCTTTATTGGCTTGCTC 639
Query 692 CTATTCCCAACACTGATGACT-TTCTCATCCAATGTTTTGATTTCTCTAGGGAGATATGC 750
|| || | | ||| ||| | || |||||||| ||||||||||| | |||||||| |
Sbjct 640 ATAATCGCGAGACTCTTGAGTATT-TCATCCAAACCTTTGATTTCTCGATGGAGATATTC 698
Query 751 AAACCCTTTTGTCTTCTTCCTTGTC 775
|||||||||||||| || || ||||
Sbjct 699 AAACCCTTTTGTCTCCTGCCGTGTC 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5