BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51171.1 Length=1204 Score E Sequences producing significant alignments: (Bits) Value Ahg341755 jgi|Araly1|341755|fgenesh1_pg.C_scaffold_3001518 835 0.0 Ahg929444 jgi|Araly1|929444|scaffold_301901.1 723 0.0 Ahg929442 jgi|Araly1|929442|scaffold_301899.1 723 0.0 Ahg929484 jgi|Araly1|929484|scaffold_301941.1 497 6e-140 Ahg887299 jgi|Araly1|887299|Al_scaffold_0408_1 464 6e-130 Ahg925882 jgi|Araly1|925882|scaffold_201443.1 200 2e-50 Ahg929631 jgi|Araly1|929631|scaffold_302088.1 178 9e-44 > Ahg341755 jgi|Araly1|341755|fgenesh1_pg.C_scaffold_3001518 Length=1110 Score = 835 bits (452), Expect = 0.0 Identities = 920/1136 (81%), Gaps = 72/1136 (6%) Strand=Plus/Plus Query 59 CGCTTCCATGGGAGCTAGAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTT 117 ||||||| || || | |||||||| ||||| ||||| ||| || || |||||||| | Sbjct 17 CGCTTCCGTGCGAATTGGAGGAAGAAATACTCTCTCGGCTTCCA-CCTTTATCTCTTGCT 75 Query 118 CGATTCAGATCCGTTTGCAAACGA-TGGAATTATCTTTTCGATGAAAAGAGTTTCATCAA 176 |||||||||||||||||||||| | |||||| | ||| | |||| || || |||||||| Sbjct 76 CGATTCAGATCCGTTTGCAAAC-AGTGGAATGCTATTTGCAATGAGAATAGGTTCATCAA 134 Query 177 AAACCACTTCGCTCGTGCTTGTCCTCAGTTCATCTTCATGACCGATTCCAATATTTATTC 236 |||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| Sbjct 135 TAACCACTTCGCTCGCGCTCGTCCTCAGTTCATCTTCATAACCAATTCCAATATTTATTC 194 Query 237 GATAGAGATCATCGGTCTCGACGGCGTTGATCCAACGATTAAGTTACGTGTGCTAGACTC 296 ||||||||| ||| |||||||||| |||||||||||||||||||| || | |||| ||| Sbjct 195 GATAGAGATTATCAGTCTCGACGGGGTTGATCCAACGATTAAGTTGCGAGAGCTACCCTC 254 Query 297 CTCTGGTATCC-CTTACCGTGACTGGAAATTT-GCTTACATAACCATCACTGCTTGCGAT 354 |||| ||| || |||||||||| | | |||| | |||||||||||||||| |||||||| Sbjct 255 CTCTCGTA-CCGCTTACCGTGAATTG-TATTTGGATTACATAACCATCACTACTTGCGAT 312 Query 355 GGGT-TCTTGTTTTGTAACTCTT-GGGCTAGTCCTAAGGGGACAGCTTTTTGGAATCCGT 412 ||| ||||||||||||||| || || || ||| |||| ||||| | |||||||||| Sbjct 313 -GGTCTCTTGTTTTGTAACTATTCGGATTA-TCCCAAGGTTACAGCACTCTGGAATCCGT 370 Query 413 GGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGGTTTCAATGTCTGTGGCTTAG 472 |||||||||| |||||||||||||||| | | |||||| ||| |||||| |||| | | Sbjct 371 GGTTGAAACAAGTTAAATGGATCGAGTGCAATGATAAATATTTTGATGTCTCTGGCGTGG 430 Query 473 GATACGATAATACTAGAGACGGAAAGGTTTACAAAATCTTGGGGTATTTAATGTGTCGCC 532 ||||||||||||||||| || |||||||||||| ||||| |||| ||| | | | Sbjct 431 GATACGATAATACTAGACCCGAAAAGGTTTACAAGATCTTAGGGTCTTT--TATAT---- 484 Query 533 CTGAAGATGGGAGCTCTTACGTATACCACCAGAGAGTTGCGATCTACGACTGTGCCTCTC 592 | | | | || ||| | | ||||||||||||||||||| |||||||||| Sbjct 485 C------T--G-G---TT--GTA-AAGTCGAGAGAGTTGCGATCTACGAGTGTGCCTCTC 529 Query 593 ACGCGTTCAAGTTTATTGAAAT-ATCGAACAAGGACTGGTTCC-TAA-CCGATGTTACAC 649 |||||||||||| ||||| | | ||| ||| || | | | || ||| || | |||| || Sbjct 530 ACGCGTTCAAGTCTATTG-ATTCATCTAACGAGCAAT-GCCCCTTAAGCC-AAGTTAAAC 586 Query 650 GATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGCTTTCTCCTATTCCCAACAC-TGAT 708 ||||||||||||| |||||||||||||||||||||| | ||| ||||||| |||| | | Sbjct 587 GATTCAGTGTGTCCTTGAACGGAAATCTCTATTGGCGTACTCGTATTCCCCACACTTTA- 645 Query 709 GACTTTCT-CATCC-AATGTTTTGATTTCTCTAGGGAGATATGCAAACCCTTTTGTCTTC 766 |||||| | ||||| || | ||||||||||| ||||| |||| ||||| ||||||||| | Sbjct 646 GACTTT-TACATCCGAA-GCTTTGATTTCTCGAGGGATATATTCAAACACTTTTGTCTCC 703 Query 767 TTCCTTGTCG-GAAGTTTGATGCTTT--CGATTTACTTG---T--AAGTTTTCAGGGGAG 818 |||| || || | || | || ||| |||| |||||| | ||||| || ||||| Sbjct 704 TTCCGTGCCGCG-AGAATCAT--TTTCGCGATGTACTTGTTCTCGGAGTTTACAAGGGAG 760 Query 819 ATAGGTTATCCTTGTTAAAGCAATGTTATAAGACAAGGAAG-GTTGAGATTTGGGTTACG 877 ||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||| Sbjct 761 ATAGGTTGTCCTTGTTAAAGCAATGTTATGTGACAAGG-AGCGTTGAGATTTGGGTTACG 819 Query 878 AAGAATAAGATTGATACTAGTAACAACAATGGATCAGACGAAGTTGTGTGGATTCACTTG 937 ||||| ||||||| | |||||||||||||||| |||||||||||||||||||| | ||| Sbjct 820 AAGAAGAAGATTG--A-TAGTAACAACAATGGAACAGACGAAGTTGTGTGGATTAAGTTG 876 Query 938 TTGACGTTGCTACCAAATAACTTGCCAAACTTAT-TTATCGAGTGTTATGGCATTAGTTA 996 ||||| |||| | ||||||||||||||||||||| | || ||||||||||||||||||| Sbjct 877 TTGACTTTGCCAACAAATAACTTGCCAAACTTATATAAT-AAGTGTTATGGCATTAGTTA 935 Query 997 CTTCATCTATGACAAGACCACCTTCATCATTTATTGTGCTGACGA-GAACACTT-AT-GC 1053 |||||||||||||||||||||| | ||||| | ||||| ||| || || | | || Sbjct 936 CTTCATCTATGACAAGACCACCCTAATCATGTGTTGTGGTGAAGATGATGG-TGGAACGC 994 Query 1054 GG-CTTGCATCTA--TATTGTCAGGGGAGATTTGCTCAAGAAGTTTGTAATTGACACCAT 1110 || ||| |||||| |||||||||| |||||||| |||||||| || |||||| | Sbjct 995 GGGCTTTCATCTACATATTGTCAGGAGAGATTTGTTCAAGAAGATTCCAATTGATTCTGG 1054 Query 1111 GGTTTTCTGTTGTTAT-AGCTGTGTTTATGCTCCCAATTTTATCCCCCTTCCTTTA 1165 ||||||| | |||| | | |||| |||||||||| ||||||||||| |||||||| Sbjct 1055 GGTTTTCCGGTGTTGTCA-CTGTCTTTATGCTCCGAATTTTATCCCGGTTCCTTTA 1109 > Ahg929444 jgi|Araly1|929444|scaffold_301901.1 Length=1159 Score = 723 bits (391), Expect = 0.0 Identities = 888/1119 (79%), Gaps = 69/1119 (6%) Strand=Plus/Plus Query 76 GAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTTCGATTCAGATCCGTTTG 134 |||||||||||||| ||||| ||| || || | ||||||| ||| |||||||| ||||| Sbjct 54 GAGGAAGATATACTCTCTCGGCTTCCA-CCTCTCTCTCTTGCTCGTTTCAGATCAGTTTG 112 Query 135 CAAACGATGGAATTATCTTTTCGATGAAAAGAGTTTCATCAAAAACCAC-TTCGCTCGTG 193 ||||| ||||||| |||||||| | ||||| || |||||||| ||||| || || || | Sbjct 113 CAAACTATGGAATGATCTTTTCAACGAAAATAGGTTCATCAACGACCACTTTGGC-CGCG 171 Query 194 CTTGTCCTCAGTTCATCTTCA-T-GACCGATTCCAATATTTATTCGATAGAGATCATCGG 251 | | ||||| |||||||| | | || | |||||||||||||||||||||| ||||||| Sbjct 172 CCCGGCCTCAATTCATCTT-ACTGGA-CAATTCCAATATTTATTCGATAGAAATCATCGA 229 Query 252 TCTCGACGGCGTTGATCCAACGATTA-AGTTACGTGTGCTAGACTCCTCTGGTATCCCTT 310 | | |||||| |||||||||| | || | || |||| ||||| |||||||||||| |||| Sbjct 230 TTTAGACGGCATTGATCCAACCA-TAGAATTGCGTGAGCTAGCCTCCTCTGGTATTCCTT 288 Query 311 ACCGTGACTGGAAATTT-GCTTACATAACCATCACTGCTTGCGATGGGTTCTTGTTTTGT 369 |||| || | | |||| | | ||| |||||||||| ||||||||||||||||||||||| Sbjct 289 ACCGGGAAT-TAGATTTGGATCACACAACCATCACTACTTGCGATGGGTTCTTGTTTTGT 347 Query 370 AAC-TCTTGGGCTAGTCCTAAGGGGACAGCTTTTTGGAATCCGTGGTTGAAACAGGTTAA 428 ||| | || | | | ||||||||||||| |||||||||||||||||| ||||||||| Sbjct 348 AACTTTTTTGTTTCG-GCTAAGGGGACAGCACTTTGGAATCCGTGGTTGAGACAGGTTAA 406 Query 429 ATGGATCGAGTACGAGGATAAAG-GTTTCAATGTCTGTGGCTTAGGATACGATAATACTA 487 ||||||||||||||||||||||| ||| | |||| | ||||||||||||||||||||||| Sbjct 407 ATGGATCGAGTACGAGGATAAAGAGTT-CTATGTTTTTGGCTTAGGATACGATAATACTA 465 Query 488 GAGACGGAAAGGT-TTACAAAATCTTGGGGTATTTAATGTGTCGCCCTGAAGATGG-GAG 545 | || ||| || ||||| ||||| |||||||| || ||| | | ||| | ||| Sbjct 466 TAC-CGAAAAAGTATTACAGGATCTTTGGGTATTTTGTGCGTCATCGTCAAG-TCCAGAG 523 Query 546 CTCTTACGTAT-ACCACCAGAGAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGT 604 | | || |||||||||||||||| || ||||| |||| ||||| ||||| |||| Sbjct 524 -----A-G-ATTACCACCAGAGAGTTGCCATTTACGAGTGTGTGTCTCAAGCGTTTAAGT 576 Query 605 TTATTGAAATATC-GAACAAGGACTGGTTCC-TAAC-CGATGTTACACGATTCAGTGTGT 661 |||||| | | | || | |||||||| || ||| | | | ||||||| | ||||| Sbjct 577 ATATTGATACACCTGA-CGAGGACTGGC-CCATAAAGCAA-GCTACACGAGGAAATGTGT 633 Query 662 CTTTGAACGGAAATCTCTATTGGCTTTCTCCTATTCCCAACACTGATGACT-TTCTCATC 720 | ||||||||||||||||||||| || || || |||||||||| |||| | || |||| Sbjct 634 CCTTGAACGGAAATCTCTATTGGGTTGCTTGTAATCCCAACACTCATGAGTATTA-CATC 692 Query 721 CAATGTTTTGATTTCTCTAGGGAGATA-TGCAAACCCTTTTGTCTT-CTTCCTTGTCGGA 778 ||| | ||||||||||| ||||| ||| | |||| | |||||||| || || ||| ||| Sbjct 693 CAAAGCTTTGATTTCTCGAGGGATATAGT-CAAAGCTTTTTGTCTCACT-CCGTGTAGGA 750 Query 779 AGTTT-GATGCTTTCGATTTACTTGTA-----AGTTTTCAGGGGAGATAGGTTATCCTTG 832 || ||| || |||| ||||| | |||||| | ||||||| |||| |||||| Sbjct 751 AGAACCGAT-CTCGCGATGTACTTTTCCTCTCAGTTTTTAAGGGAGATGGGTTTTCCTTG 809 Query 833 TTAAAGCAATGTTATAAGACAAGGAAG-GTTGAGATTTGGGTTACGAAGAATAAGATTGA 891 ||||||||||||||| |||||||| | || |||||||||||||||||||| |||||||| Sbjct 810 TTAAAGCAATGTTATGTGACAAGGA-GCGTCGAGATTTGGGTTACGAAGAAGAAGATTGA 868 Query 892 TACTAGTAACAACAATGGATCAGACGA-AGTTGTGTGGATTCACTTGTTGACGTTGCTAC 950 ||||||||||||| |||| || || | ||||||||||| |||| ||| |||| | Sbjct 869 TACTAGTAACAACGGTGGAG-AG--GATA-TTGTGTGGATTAACTTAATGATTTTGCCAA 924 Query 951 CAAATAACTTGCCAAACTTATTTA-TCGAGTGTTATGGCATTAGTTACTTCATCTATGAC 1009 ||| ||||||||||| |||| ||| | ||| ||||||||||||||| |||||||||||| Sbjct 925 CAACTAACTTGCCAAGCTTAATTAATA-AGTTTTATGGCATTAGTTATTTCATCTATGAC 983 Query 1010 AAGACCACC-TTCATCATTTATTGT-GCTGACGA-GAACACTT-ATGCGGCTTGCATCTA 1065 ||||||||| || ||||| | |||| | |||||| ||| | | | || |||||||||| Sbjct 984 AAGACCACCCTT-ATCATGTGTTGTTG-TGACGATGAAAA-TAGA-GCCACTTGCATCTA 1039 Query 1066 TATTGTCAGGGGAGATTTGCTCAAGAAGTTTGTAATTGACACCATGGTTTTCT-GTTGTT 1124 |||||| |||||||||||| |||||||| || ||| | | ||||||| || ||| Sbjct 1040 TATTGTTAGGGGAGATTTGTTCAAGAAGATTCAAATCAATTCTGGGGTTTTCCAGT-GTT 1098 Query 1125 AT-AGCTGTGTTTATGCTCCCAATTTTATCCCCCTTCCT 1162 | | ||||||||||||||||||||| ||||| || ||| Sbjct 1099 GTCA-CTGTGTTTATGCTCCCAATTTGATCCCGCT-CCT 1135 > Ahg929442 jgi|Araly1|929442|scaffold_301899.1 Length=1159 Score = 723 bits (391), Expect = 0.0 Identities = 888/1119 (79%), Gaps = 69/1119 (6%) Strand=Plus/Plus Query 76 GAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTTCGATTCAGATCCGTTTG 134 |||||||||||||| ||||| ||| || || | ||||||| ||| |||||||| ||||| Sbjct 54 GAGGAAGATATACTCTCTCGGCTTCCA-CCTCTCTCTCTTGCTCGTTTCAGATCAGTTTG 112 Query 135 CAAACGATGGAATTATCTTTTCGATGAAAAGAGTTTCATCAAAAACCAC-TTCGCTCGTG 193 ||||| ||||||| |||||||| | ||||| || |||||||| ||||| || || || | Sbjct 113 CAAACTATGGAATGATCTTTTCAACGAAAATAGGTTCATCAACGACCACTTTGGC-CGCG 171 Query 194 CTTGTCCTCAGTTCATCTTCA-T-GACCGATTCCAATATTTATTCGATAGAGATCATCGG 251 | | ||||| |||||||| | | || | |||||||||||||||||||||| ||||||| Sbjct 172 CCCGGCCTCAATTCATCTT-ACTGGA-CAATTCCAATATTTATTCGATAGAAATCATCGA 229 Query 252 TCTCGACGGCGTTGATCCAACGATTA-AGTTACGTGTGCTAGACTCCTCTGGTATCCCTT 310 | | |||||| |||||||||| | || | || |||| ||||| |||||||||||| |||| Sbjct 230 TTTAGACGGCATTGATCCAACCA-TAGAATTGCGTGAGCTAGCCTCCTCTGGTATTCCTT 288 Query 311 ACCGTGACTGGAAATTT-GCTTACATAACCATCACTGCTTGCGATGGGTTCTTGTTTTGT 369 |||| || | | |||| | | ||| |||||||||| ||||||||||||||||||||||| Sbjct 289 ACCGGGAAT-TAGATTTGGATCACACAACCATCACTACTTGCGATGGGTTCTTGTTTTGT 347 Query 370 AAC-TCTTGGGCTAGTCCTAAGGGGACAGCTTTTTGGAATCCGTGGTTGAAACAGGTTAA 428 ||| | || | | | ||||||||||||| |||||||||||||||||| ||||||||| Sbjct 348 AACTTTTTTGTTTCG-GCTAAGGGGACAGCACTTTGGAATCCGTGGTTGAGACAGGTTAA 406 Query 429 ATGGATCGAGTACGAGGATAAAG-GTTTCAATGTCTGTGGCTTAGGATACGATAATACTA 487 ||||||||||||||||||||||| ||| | |||| | ||||||||||||||||||||||| Sbjct 407 ATGGATCGAGTACGAGGATAAAGAGTT-CTATGTTTTTGGCTTAGGATACGATAATACTA 465 Query 488 GAGACGGAAAGGT-TTACAAAATCTTGGGGTATTTAATGTGTCGCCCTGAAGATGG-GAG 545 | || ||| || ||||| ||||| |||||||| || ||| | | ||| | ||| Sbjct 466 TAC-CGAAAAAGTATTACAGGATCTTTGGGTATTTTGTGCGTCATCGTCAAG-TCCAGAG 523 Query 546 CTCTTACGTAT-ACCACCAGAGAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGT 604 | | || |||||||||||||||| || ||||| |||| ||||| ||||| |||| Sbjct 524 -----A-G-ATTACCACCAGAGAGTTGCCATTTACGAGTGTGTGTCTCAAGCGTTTAAGT 576 Query 605 TTATTGAAATATC-GAACAAGGACTGGTTCC-TAAC-CGATGTTACACGATTCAGTGTGT 661 |||||| | | | || | |||||||| || ||| | | | ||||||| | ||||| Sbjct 577 ATATTGATACACCTGA-CGAGGACTGGC-CCATAAAGCAA-GCTACACGAGGAAATGTGT 633 Query 662 CTTTGAACGGAAATCTCTATTGGCTTTCTCCTATTCCCAACACTGATGACT-TTCTCATC 720 | ||||||||||||||||||||| || || || |||||||||| |||| | || |||| Sbjct 634 CCTTGAACGGAAATCTCTATTGGGTTGCTTGTAATCCCAACACTCATGAGTATTA-CATC 692 Query 721 CAATGTTTTGATTTCTCTAGGGAGATA-TGCAAACCCTTTTGTCTT-CTTCCTTGTCGGA 778 ||| | ||||||||||| ||||| ||| | |||| | |||||||| || || ||| ||| Sbjct 693 CAAAGCTTTGATTTCTCGAGGGATATAGT-CAAAGCTTTTTGTCTCACT-CCGTGTAGGA 750 Query 779 AGTTT-GATGCTTTCGATTTACTTGTA-----AGTTTTCAGGGGAGATAGGTTATCCTTG 832 || ||| || |||| ||||| | |||||| | ||||||| |||| |||||| Sbjct 751 AGAACCGAT-CTCGCGATGTACTTTTCCTCTCAGTTTTTAAGGGAGATGGGTTTTCCTTG 809 Query 833 TTAAAGCAATGTTATAAGACAAGGAAG-GTTGAGATTTGGGTTACGAAGAATAAGATTGA 891 ||||||||||||||| |||||||| | || |||||||||||||||||||| |||||||| Sbjct 810 TTAAAGCAATGTTATGTGACAAGGA-GCGTCGAGATTTGGGTTACGAAGAAGAAGATTGA 868 Query 892 TACTAGTAACAACAATGGATCAGACGA-AGTTGTGTGGATTCACTTGTTGACGTTGCTAC 950 ||||||||||||| |||| || || | ||||||||||| |||| ||| |||| | Sbjct 869 TACTAGTAACAACGGTGGAG-AG--GATA-TTGTGTGGATTAACTTAATGATTTTGCCAA 924 Query 951 CAAATAACTTGCCAAACTTATTTA-TCGAGTGTTATGGCATTAGTTACTTCATCTATGAC 1009 ||| ||||||||||| |||| ||| | ||| ||||||||||||||| |||||||||||| Sbjct 925 CAACTAACTTGCCAAGCTTAATTAATA-AGTTTTATGGCATTAGTTATTTCATCTATGAC 983 Query 1010 AAGACCACC-TTCATCATTTATTGT-GCTGACGA-GAACACTT-ATGCGGCTTGCATCTA 1065 ||||||||| || ||||| | |||| | |||||| ||| | | | || |||||||||| Sbjct 984 AAGACCACCCTT-ATCATGTGTTGTTG-TGACGATGAAAA-TAGA-GCCACTTGCATCTA 1039 Query 1066 TATTGTCAGGGGAGATTTGCTCAAGAAGTTTGTAATTGACACCATGGTTTTCT-GTTGTT 1124 |||||| |||||||||||| |||||||| || ||| | | ||||||| || ||| Sbjct 1040 TATTGTTAGGGGAGATTTGTTCAAGAAGATTCAAATCAATTCTGGGGTTTTCCAGT-GTT 1098 Query 1125 AT-AGCTGTGTTTATGCTCCCAATTTTATCCCCCTTCCT 1162 | | ||||||||||||||||||||| ||||| || ||| Sbjct 1099 GTCA-CTGTGTTTATGCTCCCAATTTGATCCCGCT-CCT 1135 > Ahg929484 jgi|Araly1|929484|scaffold_301941.1 Length=1133 Score = 497 bits (269), Expect = 6e-140 Identities = 512/624 (82%), Gaps = 38/624 (6%) Strand=Plus/Plus Query 568 GTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGGAC 627 |||||||| ||||| ||| ||||||| ||||||||||||||||| | | | ||| ||||| Sbjct 460 GTTGCGATATACGATTGTACCTCTCAAGCGTTCAAGTTTATTGATACACCTAACGAGGAC 519 Query 628 TGGTTCC-TAACCGATGTTAC-ACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGC 685 ||| ||| ||||||||||| | ||||| ||||||||| ||||||||||||||||||||| Sbjct 520 TGG-TCCATAACCGATGTT-CAACGATCCAGTGTGTCCTTGAACGGAAATCTCTATTGGA 577 Query 686 TTTCTCCTATT-CC--CAACA-CTGA------TGACTTTCTCATCC-AATGTTTTGATTT 734 ||||||||||| || ||| | ||| ||| |||||||||| || | |||||||| Sbjct 578 TTTCTCCTATTCCCGTCAA-ATTTGATTTTTGTGAATTTCTCATCCGAA-GCTTTGATTT 635 Query 735 CTCTAGGGAGATATGCAAACCCTTTTGTCTTCTTCCTTGTCGGAAGTTTGATGCTTT-CG 793 ||| ||||| |||| ||||||||||||||| ||||| ||||||||| | ||| ||| || Sbjct 636 CTCGAGGGATATATTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAGATGGAT-TTTTGCG 694 Query 794 ATTTACTTG---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTATA 848 ||||||||| | ||||||||| | | |||||||||||||||||||||||||||||| Sbjct 695 ATTTACTTGTCCTCCAAGTTTTCAATGAAAATAGGTTATCCTTGTTAAAGCAATGTTATA 754 Query 849 AGACAAGGAAGGTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAATG 908 |||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct 755 AGACAAGGAAGGTTGAGATTTGGGTTACGAAGAAGGAGATTGATTCTAGTAACTACAACA 814 Query 909 GATCAG-ACGAAGTTGTGTGGATTCA-CTTGTTGACGTTGCTACCAAATAACTTGCCAAA 966 | | | | ||||||||||||||| | ||||||||| || | | ||| |||||||||||| Sbjct 815 G-TGGGGAGGAAGTTGTGTGGATT-AGCTTGTTGACTTTTCCATCAAGTAACTTGCCAAA 872 Query 967 CTTATTTA-TCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCA 1025 | ||| || | || |||| | ||||||||||||||||||||||||||||||| | |||| Sbjct 873 CCTATGTAATA-AGCGTTACGACATTAGTTACTTCATCTATGACAAGACCACCCTAATCA 931 Query 1026 TTTATTGTGCTGACGA-GAACACTT-ATGCGGCTTGCATCTATATTGTCAGGGGAGATTT 1083 | | ||||| |||||| | | | | | |||||||||||||||||||||||||||| Sbjct 932 TGTGTTGTGGTGACGATGGAGG-TGGAACCC-CTTGCATCTATATTGTCAGGGGAGATTT 989 Query 1084 GCT-CAAGAAGTTTGTAATTGACACCATGGTTTTCTGTTGTTAT-AGCTGTGTTTATGCT 1141 || ||||||| || |||| || | ||||||| | |||| | | |||| |||||||| Sbjct 990 -CTTCAAGAAGATTCAAATTAACTCTGGGGTTTTCCGGTGTTGTCA-CTGTATTTATGCT 1047 Query 1142 CCCAATTTTATCCCCCTTCCTTTA 1165 |||||||| ||||| |||||||| Sbjct 1048 CCCAATTTCATCCCGGTTCCTTTA 1071 Score = 348 bits (188), Expect = 6e-95 Identities = 299/350 (85%), Gaps = 17/350 (5%) Strand=Plus/Plus Query 34 AAAAAATAACCAGAGGTAATGGTTCCGCTTCCATGGGAGCTAGAGGAAGATATACTGTCT 93 |||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 4 AAAAAAGAAACAGAGCTAATGGTTCCGCTTCCACGGGAGCTAGAGGAAGATATACTCTCT 63 Query 94 CGACTTGCAGCCCAATCTCTTGTTCGATTCAGATCCGTTTGCAAACGATGGAATTATCTT 153 || ||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 64 CGGCTTCCAGCTCAATCTCTTGTTCGATTCAGATCCGTTTGCAAACGTTGGAATGCTCTT 123 Query 154 TTCGATGAAAAGAGTTTCATCAAAAACCACTTCGCTCGTGCTTGTCCTCAGTTCATCTTC 213 ||| |||||||| |||||||||| ||||||| ||||| ||| ||||||||||||||| | Sbjct 124 TTCTATGAAAAGGGTTTCATCAACCACCACTTTGCTCGCGCTCGTCCTCAGTTCATCTGC 183 Query 214 ATGACCGATTCCAATATTTATTCGATAGAGATCATCGGTCTCGACGGCGTTGATCCAACG 273 |||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 184 ATGACCAATTCCAATATTTATTCGATAGATATCATCGGTCTCGACGGCGTAGATCCTACG 243 Query 274 ATTAAGTTACGTG-TGCTAGACTCCTCTGGTATCCCTTACCGTGACTGGAAATTTGCTT- 331 ||||| || | || | || | || ||| | || |||| | || ||||||| | || Sbjct 244 ATTAATTTGCTTGAT-CT-GCCT--TCTAA-A-CC-TTAC--T-ACCGGAAATTGGATTT 293 Query 332 -A-C---ATAACCATCACTGCTTGCGATGGGTTCTTGTTTTGTAACTCTT 376 | | |||| ||||||| |||||||||||||||||||||||||||||| Sbjct 294 TAACTGCATAAGCATCACTACTTGCGATGGGTTCTTGTTTTGTAACTCTT 343 Score = 86.1 bits (46), Expect = 6e-16 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 388 AAGGGGACAGCTTTTTGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGAT 447 ||||||||||| | ||||||||||||||||||||||||||||||| ||| | |||||| Sbjct 382 AAGGGGACAGCGCTCTGGAATCCGTGGTTGAAACAGGTTAAATGGAACGATTTTGAGGAT 441 Query 448 AAAGGTTTCAATGTCTGTG 466 |||| ||| ||| ||||| Sbjct 442 AAAGATTTTGATGCCTGTG 460 > Ahg887299 jgi|Araly1|887299|Al_scaffold_0408_1 Length=1044 Score = 464 bits (251), Expect = 6e-130 Identities = 466/564 (83%), Gaps = 37/564 (7%) Strand=Plus/Plus Query 563 AGAGAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAAT-ATCGAAC 621 ||||||||||||||||||| |||||||||||||||||||||| ||||| | | ||| ||| Sbjct 479 AGAGAGTTGCGATCTACGAGTGTGCCTCTCACGCGTTCAAGTCTATTG-ATTCATCTAAC 537 Query 622 AAGGACTGGTTCC-TAA-CCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCT 679 || | | | || ||| || | |||| ||||||||||||||| |||||||||||||||| Sbjct 538 GAGCAAT-GCCCCTTAAGCC-AAGTTAAACGATTCAGTGTGTCCTTGAACGGAAATCTCT 595 Query 680 ATTGGCTTTCTCCTATTCCCAACAC-TGATGACTTTCT-CATCC-AATGTTTTGATTTCT 736 |||||| | ||| ||||||| |||| | | |||||| | ||||| || | |||||||||| Sbjct 596 ATTGGCGTACTCGTATTCCCCACACTTTA-GACTTT-TACATCCGAA-GCTTTGATTTCT 652 Query 737 CTAGGGAGATATGCAAACCCTTTTGTCTTCTTCCTTGTCG-GAAGTTTGATGCTTT--CG 793 | ||||| |||| ||||| ||||||||| ||||| || || | || | || ||| || Sbjct 653 CGAGGGATATATTCAAACACTTTTGTCTCCTTCCGTGCCGCG-AGAATCAT--TTTCGCG 709 Query 794 ATTTACTTG---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTATA 848 || |||||| | ||||| || |||||||||||| ||||||||||||||||||||| Sbjct 710 ATGTACTTGTTCTCGGAGTTTACAAGGGAGATAGGTTGTCCTTGTTAAAGCAATGTTATG 769 Query 849 AGACAAGGAAG-GTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAAT 907 ||||||| || ||||||||||||||||||||||| ||||||| | ||||||||||||| Sbjct 770 TGACAAGG-AGCGTTGAGATTTGGGTTACGAAGAAGAAGATTG--A-TAGTAACAACAAT 825 Query 908 GGATCAGACGAAGTTGTGTGGATTCACTTGTTGACGTTGCTACCAAATAACTTGCCAAAC 967 ||| |||||||||||||||||||| | |||||||| |||| | ||||||||||||||||| Sbjct 826 GGAACAGACGAAGTTGTGTGGATTAAGTTGTTGACTTTGCCAACAAATAACTTGCCAAAC 885 Query 968 TTAT-TTATCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCAT 1026 |||| | || ||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 886 TTATATAAT-AAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCCTAATCAT 944 Query 1027 TTATTGTGCTGACGA-GAACACTT-AT-GCGG-CTTGCATCTA--TATTGTCAGGGGAGA 1080 | ||||| ||| || || | | |||| ||| |||||| |||||||||| |||| Sbjct 945 GTGTTGTGGTGAAGATGATGG-TGGAACGCGGGCTTTCATCTACATATTGTCAGGAGAGA 1003 Query 1081 TTTGCTCAAGAAGTTTGTAATTGA 1104 |||| |||||||| || |||||| Sbjct 1004 TTTGTTCAAGAAGATTCCAATTGA 1027 > Ahg925882 jgi|Araly1|925882|scaffold_201443.1 Length=859 Score = 200 bits (108), Expect = 2e-50 Identities = 571/782 (73%), Gaps = 81/782 (10%) Strand=Plus/Plus Query 337 ACCATCACTGCTTGCGATGGGTTCTTGTTTTGTAACTCTTGGGCTAGTCCTAAGGGGACA 396 |||||||| |||||||||||||| |||||| || ||| || || || | |||| | Sbjct 39 ACCATCACCGCTTGCGATGGGTTATTGTTTCGTGACT-TTTGG-AAG--C-AAGGTG-TT 92 Query 397 GCTTTTTGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGG-TTT 455 || |||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| Sbjct 93 GCGGTTTGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTT 152 Query 456 CAATGTCTGTGGCT-TAGGATACGATAATACTAGAGACGGAAAG-GTTTACAAAATCTTG 513 | || | || || | |||||||||||| | || | || |||| | |||||| |||||| Sbjct 153 C-ATTTTTGCGG-TGTAGGATACGATAGTTGTAAACCCGAAAAGAG-TTACAAGATCTTG 209 Query 514 GGGTA-TTTAATGTGTCGCCCTGAAGAT--GGGAGCTCTTA-C--GTATA-CCACCAG-A 565 ||||| |||||| |||| || | ||| | | || | |||| | ||| | ||| | | Sbjct 210 GGGTATTTTAAT-TGTCTCCGTAAAG-TCAGCGA-CACTTACCATGTA-AGTTACC-GCA 264 Query 566 GAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGG 625 |||||||||| ||||| ||| | ||||| ||||| ||||| ||||| | || | Sbjct 265 GAGTTGCGATTTACGAGTGTTCGTCTCATGCGTTGAAGTTCATTGATGCCCCTTTCACGC 324 Query 626 ACTGGTTCCTAACCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGC 685 | ||| || | | ||| ||| | | |||| |||||||| ||||||||||||| Sbjct 325 AGTGG--CC-CATC-ATG--GCAC----C--TTTGTCCTTGAACGGGAATCTCTATTGGC 372 Query 686 TTTCTCCT-ATTCCCAACACTGATGACT-TTCTCATCC-AATGTTTTGATTTCTCTAGGG 742 || ||| | | || | ||| || | | || |||||| || | ||||||||||| | || Sbjct 373 TTACTCATGA-ACCTGAGACTTATAAGTATT-TCATCCGAA-GCTTTGATTTCTCCAAGG 429 Query 743 AGATATGCAAACCCTTTTGTCTTCTTCCTTGTCGGAAG-TTTGATGCTTTCGATTTACTT 801 |||||| |||||| |||||||| || || |||| ||| | | || ||| |||| Sbjct 430 AGATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAAGAACCG-TTCTCGAGATGAACTT 488 Query 802 G---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTAT-AAGACAAG 855 | | ||||| | ||||| |||| || ||||||||||||||| || | ||| | Sbjct 489 GTCCTCGCGGTTTTTAAAAGAGATCGGTTTTCGTTGTTAAAGCAATGTAATGTA-ACAGG 547 Query 856 GAAGGTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAATGGATCAGA 915 |||| |||| |||||||| |||||| |||| ||| | | |||| ||| Sbjct 548 GAAGATTGATATTTGGGTAACGAAG---AAGA-AGAT--T-G--------ATGG---AGA 589 Query 916 CGAAGTTGTGTGGATTCACTTGTTGACGTTGCTACCAAATAACTTGCCAAACTT-ATTTA 974 ||||| |||||||| ||||| |||| |||| | ||| ||||||| | || || || | Sbjct 590 GGAAGTAGTGTGGATAAACTTGATGACTTTGCCAACAACTAACTTGTCTAAGTTGGTTAA 649 Query 975 TCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCATTTATTGTG 1034 | ||| || ||||||||||||||||||||||||||||||| | | ||||| | ||||| Sbjct 650 T-AAGTTTTGTGGCATTAGTTACTTCATCTATGACAAGACC-C-TA-ATCATGTGTTGTG 705 Query 1035 -CTGACGAG-AACACTT-ATGCGGCTTGCATCTATATTGTCAGGGGAGATTTGCTCAAGA 1091 | ||| | || ||| | || |||||||||||| |||| | ||||||| | |||||| Sbjct 706 GC-GACCACCAA-ACTGGA-GCCGCTTGCATCTATTTTGTGAAGGGAGATATATTCAAGA 762 Query 1092 AG 1093 || Sbjct 763 AG 764 > Ahg929631 jgi|Araly1|929631|scaffold_302088.1 Length=823 Score = 178 bits (96), Expect = 9e-44 Identities = 543/745 (73%), Gaps = 85/745 (11%) Strand=Plus/Plus Query 60 GCTTCCATGGGAGCTAGAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTTC 118 |||||| ||||| | |||||||| ||||||| ||| ||| || || | ||||||||||| Sbjct 35 GCTTCCGTGGGATTTGGAGGAAGAGATACTGTGTCGGCTTCCA-CCTCGATCTCTTGTTC 93 Query 119 GATTCAGATCCGTTTGCAAACGA-TGGAATTATCTTTTCGATGAAAAGAG-TTTCATCAA 176 | ||||||||||| || |||| | ||||| |||||||| | || ||||| ||| |||| Sbjct 94 GGTTCAGATCCGTATGTAAAC-ACTGGAACGATCTTTTCTACGATAAGAGCTTT-GTCAA 151 Query 177 AAACCACTTCG-CTCGTGCTTGT-CCTCAGTTCATCTTCATGACCGATTC---CAATATT 231 ||| ||||| | |||| | || || || ||||||||| ||||||| || || || Sbjct 152 AAAGCACTT-GAGTCGTACCCGTACC-CAATTCATCTTCCTGACCGAATCGAAGAAGATG 209 Query 232 TATTCGATAGAGATCATCGGTCTCGACGGCGTTGATCCAACGATTA-AGTTACGTGTGCT 290 || ||||| ||| ||||| | | | |||| | ||||| || || | |||| ||| Sbjct 210 TACTCGAT--AGA-CATCGATAT-G--GGCG--G----AACGA-TAGAGGTGCGTGAGCT 256 Query 291 AGACTCCTCTG-GTATCCCT-T-A-CC-GTG-ACTGGAAATTTGCTTACATAACCATCAC 344 | |||| || | || | | | || || | |||| | |||| ||| |||| Sbjct 257 --A-TCCTATGATTTTCATTGTCAGCCTATGAAGACGAAA--T--TTAC--AACTATCA- 306 Query 345 T-GCTTGCGATGGGTTCTTGTTTTGT-AACTCTTGGGCTAGTCCTAAGGGGACAGCTTTT 402 | |||||||||||||| |||||| || || | || || | | |||| | || || Sbjct 307 TGGCTTGCGATGGGTTATTGTTTCGTGAAAT-TT-GG--A-AAC-AAGGTG-TTGCGGTT 359 Query 403 TGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGGTTTCAATGTC 462 |||||| ||||||||| ||||||| |||||||||||||||||||||||||||| || | Sbjct 360 TGGAATTCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTCCATATT 419 Query 463 TGTGGCT-TAGGATACGATAATACTAGAGACGGAAAGGTTTACAAAATCTTGGGGTAT-T 520 | ||| | |||||||||||| | |||| || ||||| |||||| |||||||||||| | Sbjct 420 TTTGG-TGTAGGATACGATAGTTGTAGACCCGAAAAGGGTTACAAGATCTTGGGGTATAT 478 Query 521 TAATGTGTCGCCCT-GAAGATG-G-GAGCTCT-TAC-G-TA--T-ACCACCAGAGAGTTG 571 |||| ||| || | || | | | || |||| | | | || | | || | | ||||| Sbjct 479 TAAT-TGTATCCGTAGA-G-TCAGCGA-CTCTCTCCAGGTAGGTTATGAC-A-A-AGTTG 531 Query 572 CGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGGACTGGT 631 |||||||||| ||||| ||||| ||||| ||||||||||| | | ||| ||||| Sbjct 532 CGATCTACGAGTGTGCTTCTCAGGCGTTGAAGTTTATTGATACCCCTTTCAACCACTGGC 591 Query 632 TCCTAACCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGCTTTCTC 691 || | || | | | | | || ||| | | |||||| ||||| ||||||||| ||| Sbjct 592 -CC-A-CCAAGGAT-C-C--TT---TGTC-CGT-GAACGGGAATCTTTATTGGCTTGCTC 639 Query 692 CTATTCCCAACACTGATGACT-TTCTCATCCAATGTTTTGATTTCTCTAGGGAGATATGC 750 || || | | ||| ||| | || |||||||| ||||||||||| | |||||||| | Sbjct 640 ATAATCGCGAGACTCTTGAGTATT-TCATCCAAACCTTTGATTTCTCGATGGAGATATTC 698 Query 751 AAACCCTTTTGTCTTCTTCCTTGTC 775 |||||||||||||| || || |||| Sbjct 699 AAACCCTTTTGTCTCCTGCCGTGTC 723 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44946919143 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5