BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51180.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485471 jgi|Araly1|485471|fgenesh2_kg.5__1463__AT3G51180.1 2307 0.0
> Ahg485471 jgi|Araly1|485471|fgenesh2_kg.5__1463__AT3G51180.1
Length=1873
Score = 2307 bits (1249), Expect = 0.0
Identities = 1546/1683 (92%), Gaps = 45/1683 (3%)
Strand=Plus/Plus
Query 340 ATGAAGAGATCGAAGAAACCCAGAGTTTCATGGCCACCAGGTCCTAAGCTTTGTCAGGTT 399
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 219 ATGAAGAGATCGACGAAACCCAGGGTTTCATGGCCACCAGGTCCTAAGCTTTGTCAGGTT 278
Query 400 AAGGTTTTTCGAACAGAGGACAGTCCTGCCAATGTAGCCTCTCAGCCTCAACGTCATAGC 459
|||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||
Sbjct 279 AAGGTTTTTCGAACAGAGGATTGTCCGGCCAAAGTTGCCTCTCAGCCTCAACGTCATAGC 338
Query 460 TA-CC----C-A---TCTAGGAAACCTCGAGGGCCAGATCTTCCACCTGGTTTTGAAGGA 510
|| || | | ||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 339 TACCCAAAGCTATCCTCTGGGAAACCTCGAGGACCAGATCTTCCACCTGGTTTCGAAGGA 398
Query 511 AATCACTATGCAGTTAAGCCTAATGTTTCAAACATTCCTCGCATCAAATGGAAACGACCT 570
|||||||||||||||||||| ||| | ||||||| ||||||||||||||||||
Sbjct 399 AATCACTATGCAGTTAAGCC--------CAATC-TTCCTCGGATCAAATGGAAACGACCT 449
Query 571 CCTCCCAAGTTCTCTGTCAATGATACTTGGCTGGTTGGATGTGGTGGCGGGAGCTCAGAA 630
||| |||||||| ||||||||||| |||||||||||||| ||||||||| |||| | |||
Sbjct 450 CCTTCCAAGTTCACTGTCAATGATGCTTGGCTGGTTGGAGGTGGTGGCGAGAGCACTGAA 509
Query 631 TGGCAAAATGAAAACTTGAGGATTTCAAAAGTGCTGGAAGCTATCTATCCTCATCGCTCT 690
||| || |||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 510 AGGCGAACTGAAAACTTGAGGAGTTCAAAAGTTTTGGAAGCTATCTATCCGCATCGCTCT 569
Query 691 GCCATCCCTTCTCGACCCTCTGTTTCACCGGCTGTGGAAGCTGAATGCTTTGATGACAGC 750
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 570 GCCATCCCTTCTCGACCCTCTGTTTCACCTGTTGTGGAAGCTGAATGCTTTGATGACAGC 629
Query 751 AAAACTCCTGCCATTCGTCTCACTCCTATTGAAGACGAGAGTGAATCTTCTTCAGAGGAG 810
|||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||
Sbjct 630 AAAACTCCTGCCATTCGTCTCACTCCAATTGAAGACGAGAATGAA---TCTTCAGAGGAA 686
Query 811 TCATCCAACAGTAAGGTTGAATCAGGTGTTACCGCAAACAAGCAGGGTCAGTTGGAGACC 870
|||||| ||||| ||||||||| ||| ||||||| |||||||| |||||||||||||||
Sbjct 687 TCATCCCACAGTGCGGTTGAATCCGGTTTTACCGCCAACAAGCAAGGTCAGTTGGAGACC 746
Query 871 AAACCTCTATGTTCAACCCAAGAACAGGTTTCTGGTCTTACTGGTCTTGCACCAGACTTG 930
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AATCCTCCCTGTTCAACCCAAGAACAGGTTTCTGGTCTTACTGGTCTTGCACCAGACTTG 806
Query 931 AGTCTGGCTGCTTCTGCAGCTCTGACTGCACTGATGAAAACCAAGGAACAAGGGAGTTTG 990
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 807 AGTCTGGCTGCTTCTGCAGCTCTGACTGCACTGATGAAAACCAAGGAACAGGGGAGTTTG 866
Query 991 GTCGATACTGAGCTACTTATCAAGTTCCTCAGCGACCC-AAAATTAATCAAGAATCTTAT 1049
|| |||||||| |||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 867 GTTGATACTGATCTACTTATCAAGTTCCTCAGCGACCCGAAAATT-ATCAAGAATCTGAT 925
Query 1050 CACTGACACATCAGGTAAATCCTCTGAAACTAAGAATCAGCCCATTGTCACTAACATCAA 1109
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 926 CACTGACACATCAGGTAAATCCTCTGAAACTAAGAATCAGCCCGTTGACACTAACATCAA 985
Query 1110 CTCTGCTACTAGACCTGTTCCGCAGCCTGTCAGTGCTGTCACCGCCTCACCCATGGCTAG 1169
|||||||||||||| |||| || | || |||||||||||||||||||||||||
Sbjct 986 CTCTGCTACTAGACTTGTT---CA----G-CA-ACCTGTCACCGCCTCACCCATGGCTAG 1036
Query 1170 AAAGCCGCAGCCAGTGATAATACCTCAAGAACACAGTGTTGCAGTTTCTCGGTCTTTTAC 1229
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAAGCCGCAGCCAGTAATAATACCTCAAGAACACAGTGTTGCAGTTTCTCGGTCTTTTAC 1096
Query 1230 TAACCCTGAGAGGCGAGTATCACCTCCCAAGCCTGTAAATGGAAGCATATCCCCACCTAA 1289
|||||||||||| |||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 1097 TAACCCTGAGAGACGAGTATCTCCTCCCAAGCCTGCAAATGGAAACATATCCCCACCTAA 1156
Query 1290 GCCTAT-AACTGGAAAACCATCTAGTATACCAATGCCCGTTCATTTCCATGTCGGTATAG 1348
|||||| || ||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 1157 GCCTATGAA-TGGAAAACCGTCTAGTATACC-A-----GTTCATTTCCATGTCGGTATAG 1209
Query 1349 CTAAAGAACAACCTCAGCCTGCTCGGTTCCCATCGAGTTCTCTGCCAATGAACCTTAACT 1408
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 CTAAAGAACAACCTCAGCCTGCTCGGTTCCCATCGAGTTCTCTGCCAATGAACCTTAACC 1269
Query 1409 TCCACCGACCTCCAAATGTTTTCTCAGAACCAAAGGTAATAGTAAATCCTCAACCCCAAC 1468
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TCCACAGACCTCAAAATGTTTTCTCAGAACCAAAGGTAATAGTAAATCCTCAACCCCAAC 1329
Query 1469 ACCAACCCTATTCCGCATTCCGTACATCTGAAATGAACTATGTTCAATCATCAATTGGAC 1528
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1330 ACCAACCCTATTCCGCATTCCGTACTTCTGAAATGAACAATGTTCAATCATCAATTGGAC 1389
Query 1529 TTGGAAGGGGTCCTCAAACCGGTTTCAATTCTTATCCAATGAACTTTAGCCGGGCAGATG 1588
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1390 TTGGAAGGGGTCCTCACACCGGTTTCAATTCTTATCCAATGAACTTAAACCGGGCAGATG 1449
Query 1589 CAATT---GGTAGCGCTAAACCAGTAGTACAACCTATGAAGGGTCTAGACTATTTCAAAA 1645
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1450 TTATTACTGGTAGAGCTAAACCGGTAGTACAACCTATGAAGGGTCTAGACTATTTCAAGA 1509
Query 1646 ACCTTATAAGGGAACATGGCACAGATAATCATGAAACTAACCAATACCATTCACAAACTG 1705
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1510 ACCTTATAAGGGAACATGGGACAGATAATCATGAAACTAAGCAATACCATTCACAAACTG 1569
Query 1706 GAATATTCAACGGACGCATTGATAATAATAATAAGATTCATCAACAATGTATCTACTTTG 1765
|||||||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1570 GAATATTCAATGGACGCCTTGATAATAATATTAAGATTCAGCAACAATGTATCTACTTTG 1629
Query 1766 GCACTGCGAATGGATGTAATATGGGAGACAGTTGCACCTATGTTCATGACCGGTATAGGC 1825
|||||| || ||||||||| ||||||| |||||| ||||||||||||||||| |||||
Sbjct 1630 GCACTGTGAGTGGATGTAAGCTGGGAGATAGTTGCGTCTATGTTCATGACCGGTTTAGGC 1689
Query 1826 CCAACTTTGAGGCCGCGGCTCCGAGGGCTAAGAGAATGAAGTTTGGAAGGTATGAGAGAA 1885
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1690 CCAACTTTGAGGCCGAGGCTCCGAGGGCTAAGAGAATGAAGTTTCGAAGGTATGAGAAAA 1749
Query 1886 ATG-GTTTTTGAACATaaaaaaaaaaaTAGAGTTCACTTTTATAGTCTTGTCTATCACTG 1944
|| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1750 ATAAGTTTT-GAACATAAAAAAAAAATTAGAGTTCATTTTTATAGTCTTGTCTATCACTG 1808
Query 1945 GTTAAGGAACAAAACCTGAGGTGATACAACTTTCAATTTTGATCAATTTGTGCGCACCAA 2004
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1809 GTTAAGGAACAAAACCTGAGGTGATACAACTTTCAATTTTGATCAATTTGTGTTTACCAA 1868
Query 2005 TTT 2007
|||
Sbjct 1869 TTT 1871
Score = 174 bits (94), Expect = 2e-42
Identities = 164/194 (85%), Gaps = 20/194 (10%)
Strand=Plus/Plus
Query 77 tcatc-atcatcaCCCAAATCCTTCCGCCGACGTCTCTTTCTTGTTTCCGTTTTCTCTCT 135
||||| ||||||||||||||||| |||||| |||||||| |||||||| | ||| |||||
Sbjct 41 TCATCAATCATCACCCAAATCCTCCCGCCGTCGTCTCTTCCTTGTTTCTG-TTT-TCTCT 98
Query 136 CCGATCTCTGACTCATCCATCGTATTGACC-AATTCCCTAATCAAAATCCTTCGAATCTC 194
| || | || || | | | |||||||| || ||| ||||||||||||||||||||||
Sbjct 99 -C--TC-C-GA-TC-T-C-T--TATTGACCAAAATCCGTAATCAAAATCCTTCGAATCTC 147
Query 195 AATTTGCTTCG-TTAAGAAATCTGTAGATCTAGCAGAAAAAATTCATAT-T-TGATCTGA 251
|||||| |||| |||||||||||||||||||||||||||| | || | | | | ||||||
Sbjct 148 AATTTGTTTCGTTTAAGAAATCTGTAGATCTAGCAGAAAAGACTCTT-TCTCT-ATCTGA 205
Query 252 ATCTGATaaaaaaa 265
||||||||||||||
Sbjct 206 ATCTGATAAAAAAA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5