BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51190.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323679 jgi|Araly1|323679|fgenesh1_pm.C_scaffold_5001223 1275 0.0
> Ahg323679 jgi|Araly1|323679|fgenesh1_pm.C_scaffold_5001223
Length=777
Score = 1275 bits (690), Expect = 0.0
Identities = 753/783 (96%), Gaps = 6/783 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCGTGTGATTAGGGCACAGCGTAAAGGTGCGGCTGGTTCCGTTTTCAAGTCCCAC 60
||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 1 ATGGGTCGTGTGATTAGGGCACAGCGT-AAGG-G-TGCTGGTTCCGTTTTCAAGTCCCAC 57
Query 61 ACCCACCACCGCAAGGGTCCAGCTAAGTTCCGGAGCCTCGATTACGGAGAGCGAAACGGT 120
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 58 ACTCACCACCGCAAGGGTCCAGCTAAGTTCCGGAGCCTCGATTACGGCGAGCGAAATGGT 117
Query 121 TACCTCAAAGGATTGGTGACCGAAATCATCCACGACCCAGGCCGTGGTGCTCCTCTCGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TACCTCAAAGGATTGGTGACCGAAATCATCCACGACCCAGGCCGTGGTGCTCCTCTCGCT 177
Query 181 CGTGTCGCGTTCCGTCATCCTTTCCGCTACATGAAGCAGAAGGAACTGTTCGTAGCCGCC 240
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 CGCGTCGCGTTCCGTCATCCTTTCCGCTACATGAAGCAGAAGGAGCTGTTCGTAGCCGCC 237
Query 241 GAAGGTATGTACACCGGACAATACCTCTACTGTGGTAAGAAGGCTAATCTTATGGTCGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAAGGTATGTACACCGGACAATACCTCTACTGTGGTAAGAAGGCTAATCTTATGGTCGGT 297
Query 301 AACGTTCTTCCCCTTGGATCAATCCCTGAGGGAGCTGTTATCTGTAACGTTGAGCTCCAT 360
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 298 AACGTTCTTCCCCTTGGATCAATCCCTGAGGGAGCTGTTGTCTGCAATGTTGAGCTCCAT 357
Query 361 GTCGGTGACCGTGGTGCTCTCGCTAGGGCTTCTGGTGATTACGCCATCGTAATTGCTCAC 420
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 GTCGGTGACCGTGGCGCTCTCGCTAGGGCTTCTGGTGATTATGCCATCGTAATTGCTCAC 417
Query 421 AATCCTGAAAGCAACACCACTAGGGTTAAGCTTCCTTCTGGATCGAAGAAGATTTTGCCA 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AATCCTGACAGCAACACCACTAGGGTTAAGCTTCCTTCTGGATCGAAGAAGATTTTGCCA 477
Query 481 AGTGCGTGCAGAGCCATGATTGGGCAAGTTGCAGGTGGAGGAAGAACAGAGAAGCCACTT 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGTGCTTGCAGAGCCATGATTGGGCAAGTTGCAGGTGGAGGAAGAACAGAGAAGCCACTT 537
Query 541 CTCAAGGCTGGAAATGCATACCACAAGTACAAAGCGAAGAGGAACTGTTGGCCTGTTGTA 600
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 538 CTCAAGGCTGGAAATGCATACCACAAGTTCAAAGTGAAGAGGAACTGTTGGCCTGTTGTG 597
Query 601 CGTGGTGTTGCGATGAACCCAGTGGAACATCCCCACGGAGGAGGAAACCACCAGCACATT 660
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 598 CGTGGTGTTGCGATGAACCCAGTGGAACATCCCCACGGAGGAGGTAACCATCAGCACATT 657
Query 661 GGTCACGCCAGTACGGTCAGGCGTGATAAATCTGCTGGTGCTAAGGTTGGTCAAATTGCT 720
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 658 GGTCACGCCAGTACGGTTAGGCGTGATAAATCTGCTGGGGCTAAGGTTGGCCAAGTTGCT 717
Query 721 GCAAGGAGAACTGGTCGTCGTAGAGGTGCAGCTGCCACATTAGCAGCCAAGGCAGACTAC 780
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 718 GCAAGGAGAACTGGTCGTCGTAGAGGTACAGCCGC-A--TTAGCAGCCAAGGCAGACTAC 774
Query 781 TAG 783
|||
Sbjct 775 TAG 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5