BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51220.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485473 jgi|Araly1|485473|fgenesh2_kg.5__1465__AT3G51220.1 1085 0.0
> Ahg485473 jgi|Araly1|485473|fgenesh2_kg.5__1465__AT3G51220.1
Length=786
Score = 1085 bits (587), Expect = 0.0
Identities = 689/737 (93%), Gaps = 12/737 (2%)
Strand=Plus/Plus
Query 26 ATGGTTCGGGCCGAGATCGAAACCGGAGCTCCTTTCCGTTCTGTTAAAGAGGCTGTTACT 85
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 34 ATGGTTCGCGCAGAGATCGAAACCGGAGCTCCTTTCCGGTCTGTTAAAGAGGCTGTCACT 93
Query 86 CTTTTCGGCGAGAGAATTCTTCTCGGAGATAATTACATCAGCAAGTCCGTAGAGAGAAGC 145
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 94 CTCTTCGGCGAGAGAATTCTTCTCGGAGATAATTACATCAGCAAGTCCGTCGAGAGAAAC 153
Query 146 AGTTGCAAAAGCATTCAAGATGAGCTGGTTGAAGCAAAGGAGAATCTGAAGAAAGCTGAG 205
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 154 AGCTGCAAAAGCATCCAAGATGAGCTGGTGGAAGCAAAGGAGAATCTGAAGAAAGCTGAG 213
Query 206 GAAGAGAACAAGGTTTTGTCTCAGCTTATCGAAAGCCTTACACAAGAGCTTGAAACCACT 265
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 214 GAAGAGAACAAGGCTTTGTCTCAGCTTATCGAAAGCCTAACACAAGAGCTTGAAACCGCT 273
Query 266 AAAGAAAAGCTTAATCACTCACTCAGAAATTTCCCAGAACACCCTCAAGTCGAAGATGAC 325
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 274 AAAGAAAAGCTTAATCACTCACTTAGAAAATTCCCGGAACACCCTCAAGTCGAAGATGAC 333
Query 326 CTCAAGTTTATAGAGGAATCCACGGTTAACGAACCGGACAACATAACCGAGATCAAGATG 385
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 CTCAAATTCATAGAGGAATCCACGGTTAACGAACCGGACAACATAACCGAGATCAAGATG 393
Query 386 AACCGGTTTGATCGAAATGAAGTGTATGGTGATCGTCTAGAGAAGAGGCGTTCGGTGAAG 445
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 394 AACCGGTTTGATGGAAATGAAGTGTATGGTGATCGTCTAGAGAGGAGGCGTTCGGTGAAG 453
Query 446 TTTGCTAACCCACCATTGTTAACGAAGGTCATTGTGGGCAAAGAGGAGAAGAACCAAGTT 505
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 454 TTTGCTAACCCACCATTGTTAACAAAGGTCATTGTGGGCAAAGAGGAGAAGAACCAAGTT 513
Query 506 ATGGTTAAGAAGCAGACGAAGAAGATGAAGCCATTGGTTCCATTGGCTGCTTGGCTCTTT 565
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 ATGGTGAAGAAGCAGACGAAGAAGATGAAGCCATTGGTTCCATTGGCTGCTTGGCTCTTT 573
Query 566 GCAAGAAACCGGTCTAGTTAAACCACCACTTTAGAGATCCTCATCTCGTGTTCAGTACTC 625
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 574 GCAAGAAACCGGTCTAGTTAAACCAC---TTTAGAGATCCTCATCTCGTGTTTGGTACTC 630
Query 626 ATGCGTGCCTTACAAGTTAAGAAATAATATCCCTGAATTAATTGTTCTTAATACGGAGA- 684
||||||||||| | |||||||||||||||||| ||| ||||||||| ||||| || ||
Sbjct 631 ATGCGTGCCTTGCGAGTTAAGAAATAATATCCATGAGTTAATTGTTTTTAATTTGG-GAA 689
Query 685 TTCATTCAAATTA-GATCTTGTTACAAATTACTAAACAA--GTG--CTTATCACAAAGTC 739
||||||||| ||| ||| |||||||| |||| ||||||| ||| ||||||| ||||||
Sbjct 690 TTCATTCAA-TTAAGATTTTGTTACATATTAATAAACAATTGTGTACTTATCATAAAGTC 748
Query 740 TTGTTTGGATAAACTAT 756
||||| ||||||| |||
Sbjct 749 TTGTTGGGATAAA-TAT 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5