BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51230.1
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898023 jgi|Araly1|898023|Al_scaffold_0005_1989 1046 0.0
> Ahg898023 jgi|Araly1|898023|Al_scaffold_0005_1989
Length=813
Score = 1046 bits (566), Expect = 0.0
Identities = 738/816 (90%), Gaps = 32/816 (4%)
Strand=Plus/Plus
Query 67 ATGGAGACTCCATCATCAGCCAA-AAGGGTCACTAGATCACAGGCTATCTCTGCAATCAA 125
|||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGAGACTCCATCATCA-ACAAGAAGGGTCACTAGATCACAGGCTCTCTCTGCAATCAA 59
Query 126 CGACTCTGATTCTGACTTCAAAGTT-CCCTTTTCATCATCAAACAAA-ACAGAGGATTCG 183
| |||||||||||| ||||||| || ||||||||||||||||| ||| |||||||||||
Sbjct 60 CAACTCTGATTCTGGCTTCAAA-TTCCCCTTTTCATCATCAAA-AAATACAGAGGATTCA 117
Query 184 AGCATC-G---ACCAAAG---A--AAAG---AAGAAGACAGGTCTGCACTAATCGACATA 231
|||||| | | |||| | |||| |||||||||||||||||||||||||||||
Sbjct 118 AGCATCGGTCAAAGAAAGAACATCAAAGCACAAGAAGACAGGTCTGCACTAATCGACATA 177
Query 232 ACCAACGACTCACCGATCGTGGGTCTAACGATGCAGACACCTCCTTCAGGGTTCATGGTT 291
||||| |||||||| ||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 178 ACCAATGACTCACCAATCATTGGTCTAGCGATGCAGACACCTCCTTCAGGGTTCATGGTT 237
Query 292 AAGAGAAAAAGCAGCAGAATCAAGATCACGCCTGGATCTGGTGAAGCCCTTTTGAGAGGA 351
|| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 AAAAGGAAAAGCAGCAGAATCAAGAACACGCCTGGATCTGGTGAAGCCCTTTTGAGAGGA 297
Query 352 CAAGTCAAAACCCTTTTACACAAGGTTGAAGAAGGAACAGAGCTTATCCATTCAATAAAG 411
|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 298 CAAGTCAAAACCCTCTTACACAAGGTTGAAGAAGGAAGAGAGGTTATCCATTCAATAGAG 357
Query 412 ACTCGTCCTTTTATCCATCTGGTCACTTCTCCAATGAGACTTCTCGCTCCAACTCCAGCA 471
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACTCGTCCTTTTATCCATCTCGTCACTTCTCCAATGAGACTTCTCGCTCCAACTCCAGCA 417
Query 472 AATACTCCCCAATTTCCAAACTTTTCAGATGATGATGTCAAGATTAAGATCGCATCTCCG 531
|||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||| |||
Sbjct 418 AATACTCCTCAATTTCCAAACTTTTCAGATAATGATGTGAAGATTACGATCGCATCACCG 477
Query 532 ATTGTTGCTGGA-AACTTGAGAACCTCTCAGATATCTGAAGAGAAAGAAGACAAGAGTAT 590
|||||||||||| || ||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct 478 ATTGTTGCTGGACAA-TTGAGAACCCCTCAGATATTTGAAGAGAAAGAAGAGAAGAGTAT 536
Query 591 GAGCATAACTCGTTCTTTACTGTTTGACTTCACCGACAAGTCAGCTTTATGAGgaagaag 650
|||| ||||||||||||| |||||||||||||| ||||||| ||| | ||| ||||||||
Sbjct 537 GAGCGTAACTCGTTCTTTGCTGTTTGACTTCACGGACAAGTTAGCATCATG-GGAAGAAG 595
Query 651 aagaagaagaagaagaagaagaggaggttgatgggttgtgtgaaggaatgaagaagatga 710
|||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 596 AAGAAGAAGAAGAAGA-G--G------TTGATGGGTTGTGTGAAGGAATGAAGAAGATGA 646
Query 711 atgtagagaCGAA-TCAAGCTGAATTTGCAGGGAAACATAACAGATTTCTTTACAACAGT 769
||||||||| || ||| ||||| |||||||||||||||||||||||| | |||||||||
Sbjct 647 GTGTAGAGAC-AACTCACGCTGAGTTTGCAGGGAAACATAACAGATTTGTGTACAACAGT 705
Query 770 GAAGACGATGAGATCGTAGAGGCTAAAGAAGTGTTGCATTTGAAAGGGATTCCAACTCCG 829
||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 706 GAAGATGAGGAGATCATAGAGGCTAAAGAAGTGTTGCACTTGAAAGGGATTCCAACTCCT 765
Query 830 AGAGGAAAGCATTTTAGGTTTGCTACTCAAGAAGAA 865
|||||||||||||| |||||||||||| ||||||||
Sbjct 766 AGAGGAAAGCATTTCAGGTTTGCTACTAAAGAAGAA 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36636123237
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5