BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51240.1
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485476 jgi|Araly1|485476|fgenesh2_kg.5__1468__AT3G51240.1 2191 0.0
Ahg938544 jgi|Araly1|938544|scaffold_502735.1 54.7 2e-06
> Ahg485476 jgi|Araly1|485476|fgenesh2_kg.5__1468__AT3G51240.1
Length=1494
Score = 2191 bits (1186), Expect = 0.0
Identities = 1359/1443 (94%), Gaps = 10/1443 (1%)
Strand=Plus/Plus
Query 73 GTGGTAGGTAGCTAGCGACCTCTTCGTTCGTCAGTCATCACAAGCTTTGAAAGATTTTCA 132
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 GTGGTAGGTAGCTAGCGACCTCTTCGTTCTTCAGTCATCACAAGCTTTGAAAGGTTTTCA 60
Query 133 GCTACCACTCTCTCCTTTATATATTCATTACACATCTCTTCTTTCTATATCTCTCTTAAT 192
||||||||||||| | |||||||||||||||||||||||||| ||||| | || ||||||
Sbjct 61 GCTACCACTCTCTTC-TTATATATTCATTACACATCTCTTCTCTCTATCTGTCCCTTAAT 119
Query 193 TTAGTCTTTTGTCTTCGTAATTACAATGGCTCCAGGAACTTTGACTGAGCTAGCCGGAGA 252
|||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTAGTCCTTTGTTTTTGTAATTACAATGGCTCCAGGAACTTTGACTGAGCTCGCCGGAGA 179
Query 253 GTCTAAGCTCAACTCTAAATTTGTCAGGGACGAAGATGAACGGCCCAAAGTCGCTTACAA 312
||||||||||||||||||||| ||| ||||||| || ||||| |||||||||||||||||
Sbjct 180 GTCTAAGCTCAACTCTAAATTCGTCCGGGACGAGGACGAACGCCCCAAAGTCGCTTACAA 239
Query 313 TGTGTTTAGCGACGAAATCCCGGTGATCTCTCTCGCCGGTATCGATGACGTCGATGGAAA 372
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 TGAGTTTAGCGACGAAATCCCGGTGATCTCTCTCGCCGGTATCGATGATGTCGATGGAAA 299
Query 373 AAGAGGAGAGATCTGCCGTCAGATCGTTGAGGCTTGTGAGAATTGGGGCATCTTCCAAGT 432
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AAGAGGAGAGATCTGCCGTCAGATCGTGGAGGCTTGTGAGAATTGGGGCATCTTCCAAGT 359
Query 433 GGTCGATCACGGCGTCGATACTAACTTAGTGGCGGATATGACTCGTCTCGCTCGTGACTT 492
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 360 GGTCGATCACGGCGTCGATACTAACTTGGTAGCGGATATGACTCGTCTCGCTCGTGACTT 419
Query 493 CTTTGCTTTACCTCCGGAAGACAAGCTCCGTTTCGACATGTCCGGTGGTAAAAAAGGAGG 552
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTCGCTTTACCTCCGGAGGAAAAGCTCCGTTTCGACATGTCCGGTGGTAAAAAAGGAGG 479
Query 553 ATTCATCGTCTCTAGTCACCTCCAGGGAGAGGCTGTGCAAGATTGGAGAGAGATTGTAAC 612
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 480 GTTCATTGTCTCTAGTCACCTCCAGGGAGAGGCTGTGCAAGATTGGAGAGAGATAGTGAC 539
Query 613 GTATTTCTCGTACCCGGTGAGAAACAGAGACTACTCACGGTGGCCAGATAAGCCGGAAGG 672
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 GTATTTCTCGTATCCGGTGAGAAACAGAGACTTCTCACGGTGGCCAGATAAGCCGGAAGG 599
Query 673 TTGGGTGAAAGTGACGGAGGAGTATAGTGAGAGGCTTATGAGTTTGGCTTGTAAGCTTCT 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGGGTGAAAGTGACGGAGGAGTATAGTGAGAGGCTTATGAGTTTGGCTTGTAAGCTTCT 659
Query 733 TGAGGTTTTGTCTGAAGCTATGGGTCTTGAGAAAGAGTCTCTTACCAATGCATGCGTCGA 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAGGTTTTGTCTGAAGCTATGGGTCTTGAGAAAGAGTCTCTTACCAATGCATGCGTCGA 719
Query 793 TATGGACCAAAAGATTGTTGTTAATTATTACCCAAAATGCCCTCAGCCTGATCTCACCCT 852
|||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||
Sbjct 720 TATGGACCAAAAGATTGTTGTTAATTATTATCCAAAATGCCCTCAGCCTGACCTTACTCT 779
Query 853 CGGACTCAAGCGTCACACTGACCCTGGAACCATTACCTTGCTGCTACAAGACCAAGTCGG 912
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 780 CGGACTCAAGCGTCACACTGACCCTGGAACCATTACTTTGCTGCTCCAAGACCAAGTCGG 839
Query 913 TGGATTACAAGCCACACGTGACAATGGCAAGACATGGATTACGGTTCAGCCTGTTGAAGG 972
|||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 840 TGGACTACAAGCCACACGTGACAATGGCAAGACGTGGATTACGGTCCAGCCTGTTGAAGG 899
Query 973 AGCGTTTGTCGTCAATCTCGGCGACCACGGCCATTTTTTGAGCAATGGGAGGTTCAAGAA 1032
||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 900 AGCGTTTGTAGTCAATCTCGGCGACCACGGTCATTTTCTGAGCAATGGGAGGTTCAAGAA 959
Query 1033 TGCTGATCATCAGGCCGTGGTGAACTCTAACTCGAGCAGATTATCCATAGCCACGTTCCA 1092
||||||||||||||| ||||||||||| |||||||| ||| |||||||||| ||||||||
Sbjct 960 TGCTGATCATCAGGCGGTGGTGAACTCAAACTCGAGTAGACTATCCATAGCTACGTTCCA 1019
Query 1093 GAACCCCGCGCCGGATGCCACAGTGTATCCACTGAAAGTAAGAGAAGGAGAGAAGGCAAT 1152
||| || || || |||||||| ||||||||||| ||||||||||||||||||||| | ||
Sbjct 1020 GAATCCGGCCCCCGATGCCACCGTGTATCCACTTAAAGTAAGAGAAGGAGAGAAGCCGAT 1079
Query 1153 ATTGGAGGAGCCAATCACGTTTGCCGAGATGTATAAGAGAAAGATGGGAAGAGATTTGGA 1212
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1080 CTTGGAGGAGCCAATCACGTTTGCTGAGATGTATAAGAGAAAGATGGGAAGAGATCTGGA 1139
Query 1213 GCTTGCTCGCCTCAAGAAGCTGGCTAAAGAGGAGCGTGACCACAAAGAAGTTGACAAGCC 1272
||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||
Sbjct 1140 GCTGGCTCGCCTCAAGAAGTTGGCTAAAGAGGAACGTGACCACAAGGAAGTTGCCAAGCC 1199
Query 1273 TGTCGACCAAATCTTCGCTTAGAATCTTTGTGTTCTTGCTTACTTGTTGT-T-G---CGT 1327
||||||||||||||||||||||||||||||| |||| ||||||||||||| | | | |
Sbjct 1200 TGTCGACCAAATCTTCGCTTAGAATCTTTGT-TTCTCGCTTACTTGTTGTGTTGGTTCCT 1258
Query 1328 T--GGTTCTGTTTTGTACGTTGGTACTGAAAATTATGCTAGGCTCGGTGTGTTTTGTGTT 1385
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 TCCGGTTCTGTTTTGTACGTTGGTACTGAAAATTATGCTAAGCTCGGTGTGTTTTGTGTT 1318
Query 1386 TATTTATGTTCTTTCGAATCATAAAGAAATAATGATAATTGATGCACTTGTCTATGACAA 1445
| ||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1319 TCTTTATTTTCGTTCTAATCATATAGAAATAATGATAATTGATGCACTTGTCTATGACAA 1378
Query 1446 AAACATCATACTCCACCTGTATTTGACGCGTTGGGTTTATGTCAAAAAGCATTAATACTT 1505
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1379 AAACATCATACTTCACCTGTATTTGACGCGTTGGGTTTATGTCAAAA-GCATTAATACAT 1437
Query 1506 CAA 1508
|||
Sbjct 1438 CAA 1440
> Ahg938544 jgi|Araly1|938544|scaffold_502735.1
Length=1132
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 812 GTTAATTATTACCCAAAATGCCCTCAGCC 840
|||||||||||||||||||||||||||||
Sbjct 669 GTTAATTATTACCCAAAATGCCCTCAGCC 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5