BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51250.1
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485477 jgi|Araly1|485477|fgenesh2_kg.5__1469__AT3G51250.1 2335 0.0
> Ahg485477 jgi|Araly1|485477|fgenesh2_kg.5__1469__AT3G51250.1
Length=1585
Score = 2335 bits (1264), Expect = 0.0
Identities = 1490/1596 (93%), Gaps = 27/1596 (2%)
Strand=Plus/Plus
Query 1 CTAATTAACGACAACACGACGAAGATGAATCCTTCTCACGGTGGCGACGACAAGCAACGA 60
|||||| ||||| | ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1 CTAATTGACGACGAGACGACGAAGATGAATCCTTCTTACGGTGGCGACGAGAAGCAACGA 60
Query 61 CCGGCGATGTATCCCCAAGTTGATCAATCCATTCCTGATAATCCTTTTGCTTC-TACAAA 119
|||||||||||||| || ||||||||||||||||||||||||||||| || || |||||
Sbjct 61 CCGGCGATGTATCCTCAGGTTGATCAATCCATTCCTGATAATCCTTTCGC-TCACACAAA 119
Query 120 TCCTTACGTCGCTTCTTCACCTTATCTATATCCTTCTCTATCCTCTCATAATCTCGGACC 179
|||||||||| ||||||| |||||||| ||||||||||||||||| || |||||||||||
Sbjct 120 TCCTTACGTCTCTTCTTCCCCTTATCTCTATCCTTCTCTATCCTCGCACAATCTCGGACC 179
Query 180 TAATCTCTTCCCAGACCACGGAGATGCATCCAACGACCAATCACCATCTGCTCCTCCTCA 239
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 180 TAATCTCTTCCCAGACCACGGAGATGCATCCAACGACCAGTCACCATCTGCTCCGCCACA 239
Query 240 GGCGACGGAGGAGGTTCTCATCCGTGTTCCCGGCGCTATTCTCAACCTTATCGACAAATC 299
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGCGACGGAAGAGGTCCTCATCCGTGTTCCCGGCGCTATTCTCAACCTTATCGACAAATC 299
Query 300 CTACAGCGTTGAACTCGCGTGCGGTGATTTCACCATCGTTCGAATTATCCA-GGGGCAAA 358
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 300 CTACAGCGTTGAACTCGCGTGCGGTGATTTCACCATCGTTCGGATCATCCAGGGGGC-AA 358
Query 359 ACATTGTAGCGGTTCTAGCCAATGTTGGAAATGAGATTCAATGGCCGTTGACGAAGAACG 418
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 ACATCGTCGCGGTTCTAGCCAATGTTGGGAATGAGATTCAATGGCCGTTGACGAAGAACG 418
Query 419 AGGTTGCAGCTAAGGTTGATGGATCTCACTATTTCTTTTCGATTCATCCGCCAAAGGAGA 478
| |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 419 AAGTTGCAGCGAAGGTTGATGGATCGCACTATTTCTTTTCAATTCATCCGCCAAAGGAGA 478
Query 479 AAGGTCAAGGATCTGGGTCTGATTCAGATGATGAACAAGGGCAAAAGAGTAAATCGAAAT 538
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 479 AAGGTCAAGGATCTGGGTCCGATTCAGATGATGAACAGGGGAAAAAGAGTAAATCGAAAT 538
Query 539 CGGATGATGAGATTCTTAATTACGGATTGACCATTGCTTCGAAAGGGCAAGAGAATGTAT 598
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 539 CGGATGATGATATTCTCAATTACGGATTGACCATTGCTTCGAAAGGGCAAGAAAACGTAT 598
Query 599 TACTTGTGCTTGATCAGGTTTTACGAGACTACAGTTGTTTCACAGAGCAG-AGAATGTCT 657
|||||||||||||||||||||| |||||||| ||||| |||||||||||| || ||||||
Sbjct 599 TACTTGTGCTTGATCAGGTTTTGCGAGACTATAGTTGCTTCACAGAGCAGAAG-ATGTCT 657
Query 658 GAAAAAGCCAAGGAGACTGGAGAAGAGGTGCTGGGAAATTCAGTGGTGGCGGAC-ACTTC 716
|||| |||||||| ||| ||||| ||||||||||||| |||| ||||||| | | |||||
Sbjct 658 GAAAGAGCCAAGGCGACGGGAGAGGAGGTGCTGGGAATTTCAATGGTGGCAG-CGACTTC 716
Query 717 GCCGGAGGAGCTTAAGGGTGAGAGAAAGGATGTTGTGGAAGGTCAATGTGCGGCGTATTG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCCGGAGGAGCTTAAGGGTGAGAGAAAGGATGTTGTGGAAGGTCAATGTGCGGCGTATTG 776
Query 777 GACAACACTTGCACCGAATGTCGAGGATTATACTCACAGTACTGCTAAAATGATAGCTTC 836
|||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 777 GACAACACTTGCGCCTAATGTTGAGGATTACACTCACAGTACTGCTAAAATGATAGCTTC 836
Query 837 CGGGTCAGGTAAGCTGATCAGAGGGATACTGTGGTGTGGGGATGTAACTGTGGAGAGACT 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGGGTCAGGTAAGCTGATCAGAGGGATACTGTGGTGTGGGGATGTAACTGTGGAGAGACT 896
Query 897 CAAGAAGGGAAACGAGGTTATGAAGAATAGGCTTA-GTCGTGCTGAGAAGGAGAAAGATG 955
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 897 CAAGAAGGGAAACGAGGTTATGAAGAATAGG-TTAAGTCGTGCTGAGAAGGAGAAGGATG 955
Query 956 TTAGCCCTGAGACACTGAGGAGAATCAAGAGGGTTAAGAGAGTGACACAAATGACAGAGA 1015
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 956 TTAGCCCTGAGACACTTAGGAGAATCAAGAGGGTTAAGAGAGTGACACAAGTGACAGAGA 1015
Query 1016 AAGTTGCCACTGGTGTTCTTTCTGGTGTTGTCAAAGTCTCGGGATTCATCACTGGTTCAA 1075
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AAGTTGCGACTGGTGTTCTTTCTGGTGTTGTCAAAGTCTCGGGATTCATCACTGGTTCAG 1075
Query 1076 TGGCAAACTCAAAAGCTGGAAAGAAGCTTTTTGGTCTCTTGCCTGGAGAGATTGTTCTCG 1135
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1076 TGGCAAACTCAAAAGCTGGAAAGAAACTTTTTGGTCTCTTGCCAGGAGAGATTGTTCTCG 1135
Query 1136 CATCCCTCGATGGATTTAGCAAGATCTGTGATGCTGTTGAAGTTGCTGGGAAAAACGTAA 1195
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1136 CATCCCTGGATGGATTTAGCAAGATTTGTGATGCTGTTGAAGTGGCTGGGAAAAACGTAA 1195
Query 1196 TGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGGTACGGCACAAAAGCAG 1255
||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||
Sbjct 1196 TGTCGACTTCATCAACTGTGACAACAGAACTCGTCAATCACAGGTACGGCACAAAAGCAG 1255
Query 1256 CAGAGGCTACTAACGAAGGGCTAGACGCAGC-GGGACATGCATTTGGAACGGCATGGGTT 1314
||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1256 CAGAGGCAACTAACGAAGGGCTAGACGCAGCAGGG-CATGCATTTGGAACGGCATGGGTT 1314
Query 1315 GCTTTCAAGATTCGAAAGGCATTTAACCCCAAAAATGTCATAAAGCCTTCATCATTGGCC 1374
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1315 GCTTTCAAGATCCGAAAGGCATTTAACCCCAAAAATGTTATAAAGCCTTCATCATTGGCC 1374
Query 1375 AAGTC---TGTTTCGGAACTAAAGGCTAAGAAAGGCTCCAAGTAAACACTAAACAGCCTT 1431
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AAGTCCGCTGTTTCGGATTTAAAGGCTAAGAAAGGCTCCAAGTAAACACTAAACAGCCTT 1434
Query 1432 CAACTGTTC-TGTGTTCATCTAAACTTGCAT--TTAGTTTTTCATTTTGGAAAAGTATAT 1488
| || | | | |||||||||| |||| | |||||||||| ||||||||||||| ||
Sbjct 1435 -A-CT-T-CATCTGTTCATCTATACTTAAAAAATTAGTTTTTCCTTTTGGAAAAGTAAAT 1490
Query 1489 GAAGATTGATTGATGTAACTCTATATTTAGTTTTCTGTGTATATTGTGATTCTAT----G 1544
||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1491 GAAGATTGACTCATGTA-CTCTATATTTAGTTTTCTGTGTATATTGTGATTCTATCTATG 1549
Query 1545 TAAACTATATAAACAGTTTCTTCCAATCTTCTCCCA 1580
||||||||||||||||||||||| ||||||||||||
Sbjct 1550 TAAACTATATAAACAGTTTCTTCGAATCTTCTCCCA 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5