BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51260.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937986 jgi|Araly1|937986|scaffold_502177.1 1240 0.0
Ahg951631 jgi|Araly1|951631|scaffold_803518.1 808 0.0
> Ahg937986 jgi|Araly1|937986|scaffold_502177.1
Length=799
Score = 1240 bits (671), Expect = 0.0
Identities = 751/790 (95%), Gaps = 3/790 (0%)
Strand=Plus/Plus
Query 81 AAAGGTAAAAGATGGCGAGATACGATCGAGCAATCACTGTATTCTCCCCCGATGGTCACC 140
||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 10 AAAGGTAAAAGATGGCGAGATACGATCGAGCAATCACTGTATTTTCTCCCGACGGCCACC 69
Query 141 TCTTCCAAGTAGAGTATGCCCTAGAAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCC 200
| || || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TATTTCAGGTGGAGTATGCCCTAGAAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCC 129
Query 201 GCGGCACAGATACTGTCGTCCTCGCCGTCGAAAAGAAATCCACCCCTAAGCTCCAGGATT 260
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 130 GCGGCACCGATACTGTCGTCCTCGCCGTCGAGAAGAAATCCACCCCTAAGCTCCAGGATT 189
Query 261 CCAGATCAGCAAGGAAGATAGTGAGCCTTGATAATCACATTGCATTGGCCTGTGCTGGAC 320
| |||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 190 CTAGATCAGCTAGAAAGATAGTGAGTCTTGATAATCACATTGCGTTGGCCTGCGCTGGAC 249
Query 321 TGAAAGCAGATGCTCGTGTCTTGATAAACAAGGCGAGGATAGAGTGTCAAAGCCACAGGC 380
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TTAAGGCAGATGCTCGTGTCTTGATAAACAAGGCGAGGATAGAGTGTCAAAGCCACAGGC 309
Query 381 TTACGTTGGAGGACCCAGTTACTGTTGAGTACATTACTCGGTACATAGCAGGGCTTCAAC 440
||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||
Sbjct 310 TTACGTTGGAGGACCCAGTGACTGTTGAGTACATCACGCGTTACATAGCAGGGCTTCAAC 369
Query 441 AGAAGTATACTCAAAGTGGTGGTGTGAGGCCTTTTGGTCTTTCCACTCTTATTGTTGGGT 500
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 370 AGAAGTATACTCAGAGTGGTGGTGTGAGACCTTTTGGTCTTTCCACTCTTATTGTTGGGT 429
Query 501 TTGATCCCTACACTCGTATACCCGCGCTTTATCAGACCGATCCATCTGGTACATTCTCTG 560
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 430 TTGATCCCTACACTCGTATACCCGCGCTTTATCAGACCGATCCATCTGGTACTTTCTCTG 489
Query 561 CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAACTCAATTAGGGAGTTTCTGGAGAAAA 620
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CTTGGAAGGCTAATGCAACTGGGAGAAACTCTAACTCAATTAGGGAGTTTCTGGAGAAAA 549
Query 621 ACTACAAAGAAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGG 680
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 ACTACAAAGAATGCTCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGG 609
Query 681 TTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAG--G-TG 737
| |||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 610 TAGTTGAGAGCGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGAAGGTG 669
Query 738 TTCTGAAGCAACTAGAAGAAGAAGAAATTGATATCATTGTGGCTGAGATCGAAGCAGAGA 797
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 670 TTCTGAAGCAACTAGAAGAAGAAGAAATTGATATTATTGTGGCTGAGATTGAAGCAGAGA 729
Query 798 AGGCTGCAGCTGAAGCAGCCAAGAAAGGCCCTGCGAAGGAAACATGAACCAGATCTTAAA 857
|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 730 AGGCTGCAGCAGAAGCGGCCAAGAAAGGCCCTGCGAAGGAAACATGAACAAGATCTTACA 789
Query 858 GTAGCGGTCT 867
||||||||||
Sbjct 790 GTAGCGGTCT 799
> Ahg951631 jgi|Araly1|951631|scaffold_803518.1
Length=793
Score = 808 bits (437), Expect = 0.0
Identities = 652/758 (86%), Gaps = 6/758 (1%)
Strand=Plus/Plus
Query 90 AGATGGCGAGATACGATCGAGCAATCACTGTATTCTCCCCCGATGGTCACCTCTTCCAAG 149
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 19 AGATGGCTAGATACGATCGAGCAATCACTGTCTTCTCCCCCGACGGTCACCTCTTTCAAG 78
Query 150 TAGAGTATGCCCTAGAAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCCGCGGCACAG 209
| || || ||||| ||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 79 TCGAATACGCCCTTGAAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTACCG 138
Query 210 ATACTGTCGTCCTCGCCGTCGAAAAGAAATCCACCCCTAAGCTCCAGGATTCCAGATCAG 269
| || ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||
Sbjct 139 ACACCGTCGTCCTCGCCGTCGAGAAGAAATCTACCCCCAAGCTTCAGGATTCTAGATCAG 198
Query 270 CAAGGAAGATAGTGAGCCTTGATAATCACATTGCATTGGCCTGTGCTGGACTGAAAGCAG 329
| || || || ||||||||||| ||||||||||| ||||| || || || || || ||||
Sbjct 199 CCAGAAAAATTGTGAGCCTTGACAATCACATTGCCTTGGCATGCGCCGGGCTCAAGGCAG 258
Query 330 ATGCTCGTGTCTTGATAAACAAGGCGAGGATAGAGTGTCAAAGCCACAGGCTTACGTTGG 389
|||| ||||||||||| ||||| || ||||| |||||||||||||| |||||||| | |
Sbjct 259 ATGCCCGTGTCTTGATTAACAAAGCAAGGATCGAGTGTCAAAGCCATAGGCTTACACTAG 318
Query 390 AGGACCCAGTTACTGTTGAGTACATTACTCGGTACATAGCAGGGCTTCAACAGAAGTATA 449
||||||| || |||||||||||||| ||||| ||||| || || ||||||||||||||||
Sbjct 319 AGGACCCTGTCACTGTTGAGTACATCACTCGCTACATTGCTGGCCTTCAACAGAAGTATA 378
Query 450 CTCAAAGTGGTGGTGTGAGGCCTTTTGGTCTTTCCACTCTTATTGTTGGGTTTGATCCC- 508
| |||||||||||||| || ||||| |||||||| |||||||| ||||| || || |||
Sbjct 379 CCCAAAGTGGTGGTGTCAGACCTTTCGGTCTTTCTACTCTTATCGTTGGCTTCGA-CCCT 437
Query 509 TACACTCGTATACCCGCGCTTTATCAGACCGATCCATCTGGTACATTCTCTGCTTGGAAA 568
||| ||||| | || | || |||||||| ||||| ||||| || |||||||||||||||
Sbjct 438 TACTCTCGTCTGCCTTCCCTATATCAGACTGATCCTTCTGGCACTTTCTCTGCTTGGAAA 497
Query 569 GCTAATGCAACTGGGAGAAACTCTAACTCAATTAGGGAGTTTCTGGAGAAAAACTACAAA 628
||||||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct 498 GCTAATGCAACCGGCAGAAACTCCAACTCAATTAGGGAATTCCTGGAGAAGAACTACAAA 557
Query 629 GAAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGGTTGTTGAG 688
||| | |||||||||||||| |||| || |||||||||||||| |||||||| ||||||
Sbjct 558 GAATCCTCTGGCCAAGAAACTATTAAACTCGCTATCCGTGCTCTTCTTGAGGTAGTTGAG 617
Query 689 AGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGGTGTTCTGAAGCAA 748
||||| |||||||||||||||||||||||||||||||| |||||| || |||| || |
Sbjct 618 AGTGGAGGAAAGAACATTGAGGTTGCTGTAATGACACGGGAGGAAACTGGTCTGC-GCCA 676
Query 749 -CTAGAAGAAGAAGAAATTGATATCATT-GTGGCTGAGATCGAAGCAGAGAAGGCTGCAG 806
|||||||||| ||||||||| || | ||||| ||||||||||| || ||||| || |
Sbjct 677 GCTAGAAGAAGCTGAAATTGATG-CAATCGTGGCCGAGATCGAAGCTGAAAAGGCGGCCG 735
Query 807 CTGAAGCAGCCAAGAAAGGCCCTGCGAAGGAAACATGA 844
| ||||||||||||||||||||| | |||||||| |||
Sbjct 736 CAGAAGCAGCCAAGAAAGGCCCTCCAAAGGAAACTTGA 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5