BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51270.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323685 jgi|Araly1|323685|fgenesh1_pm.C_scaffold_5001229 1807 0.0
> Ahg323685 jgi|Araly1|323685|fgenesh1_pm.C_scaffold_5001229
Length=1389
Score = 1807 bits (978), Expect = 0.0
Identities = 1120/1184 (95%), Gaps = 27/1184 (2%)
Strand=Plus/Plus
Query 296 ATGATGGATTCCGACTCACCTATCTGGGTTATGACTTTCTTGCCATTAAAACATTGGTCA 355
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 233 ATGATGGATTCCGACTCACCTATCTCGGTTATGACTTTCTTGCCATTAAAACATTGGTCA 292
Query 356 ACCGGGGTATATTTACCGGTGTCGGTCGTCAGATTGGTGTTGGTAAAGAGTCAGACATAT 415
|||| ||| |||||| |||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 293 ACCGTGGTGTATTTATCGGTGTTGGTCGTCAAATTGGTGTCGGTAAAGAGTCAGACATAT 352
Query 416 TTGAGGTCGCTCAGGAAGATGGAACTATTCTAGCAATGAAGTTACATAGACTAGGGAGAA 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 353 TTGAGGTCGCTCAGGAAGATGGAACTATTCTGGCAATGAAGTTACATAGACTAGGGAGAA 412
Query 476 CCTCCTTTAGGGCTGTCAAATCTAAGCGTGACTACTTGAGGCATCGCAGTAGTTTCAGCT 535
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 413 CCTCCTTTAGGGCTGTCAAGTCTAAGCGTGACTACTTGAGGCATCGTAGTAGTTTCAGCT 472
Query 536 GGTTGTATCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAGGCTTTGGAAG 595
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 473 GGTTGTATCTCTCTCGACTTGCAGCTCTCAAGGAATTTGCTTTTATGAAGGCTTTGGAAG 532
Query 596 AACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGACATTGTGTTATCATGTCCC 655
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 533 AACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGGCATTGTGTTATCATGTCCC 592
Query 656 TTGTGCAAGGTTACCCCATGGTTCAGGTGAAGCAATTACAGAACCCTGAGACAATTTTCG 715
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 593 TTGTGCAAGGTTACCCCATGGTTCAGGTGAAGCAGTTACAGAATCCTGAGACAATTTTTG 652
Query 716 AGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCA 775
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 653 AGAAGATCATTGGCATTGTTGTTCGTTTGGCTGAGCACGGTCTAATTCACTGTGACTTCA 712
Query 776 ATGAATTCAACATCATGATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAA 835
|||| || |||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct 713 ATGAGTTTAACATCATGATTGATGATGAAGAGAAGATAACAATGATCGACTTTCCACAAA 772
Query 836 TGGTATCTGTTTCACACCGAAATGCACAAATGTACTTTGACCGTGATATCGAATGCATCT 895
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TGGTTTCTGTTTCACACCGAAATGCACAAATGTACTTTGACCGTGATATCGAATGCATCT 832
Query 896 TCAAGTTTTTCAGAAAAAGGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCAAGTTTTTCAGAAAAAGGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGG 892
Query 956 AGACGGAGGTGGATGAGAACAGCAGACCATCTTTTTTCGATATTACTAAAGATGCTAATG 1015
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 893 AGACGGAGGTGGATGAGAACAGCAGACCATCTTTTTTCGATATAACTAAAGATGCTAATG 952
Query 1016 CTCTGGATAAAGATCTAGAAGCTAGTGGGTTCACAAGAAAGGAGCAGACTGACCTCGATA 1075
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CTCTGGATAGAGATCTAGAAGCTAGTGGGTTCACAAGAAAGGAGCAGACTGACCTCGATA 1012
Query 1076 AATTTATTGAAGGTGGGGTGGAGAAGAGTGAAGATTCTGATGAGGATGAGGAATCTGATG 1135
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AATTTATTGAAGGTGGGATGGAGAAGAGTGAAGATTCTGATGAGGATGAGGAATCTGATG 1072
Query 1136 ATGAAGAGCAGACTTGTGAATCAAACGAAGAAGGAAACCTAAATGAAATAAAATCATTAC 1195
||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 1073 ATGAAGAGCAGACTTGTGAATCAAATGAAGAAGGAAACCTAAATGAATTGAAATCATTAC 1132
Query 1196 AGTTGCAAGACAAGGAGCAAAAAAGTTCAGATGGTGTTGAGGCAGAAGTTGAGTTGGATA 1255
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AGTTGCAAGACGAGGAGCAAAAAAGTTCAGATGGTGTTGAGGCAGAAGTTGAGTTGGATA 1192
Query 1256 ATACCGAGAACGGTGAAAGCAATGGAGATGAAGATGAAGTCGGAAGTAATGAGGAGGAGG 1315
|||||||||||||||||||||||| || || | || | | ||| | || | ||
Sbjct 1193 ATACCGAGAACGGTGAAAGCAATG-AG--GA-G--GA-G--G-AAG-A--GA--A--AG- 1234
Query 1316 AAGAGAAAGAGGCAGAGCTGGAGAAAAATTTGGGCAAGGTAAGACGCAGAGCCATGGCAG 1375
| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1235 ATG---------CAGAGCTGGAGAAAAATTTGGGCAAGGTAAGACGCAGAGCCATGACAG 1285
Query 1376 CAGCCAGGGGACGTAGAAAGTCACAGTCTTCAAGAAACACATACAAGGACAAAGGACGCG 1435
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1286 CAGCCAGGGGACGTAGAAAGTCACAATCTTCAAGAAACACATACAAGGACAAAGGACGCG 1345
Query 1436 GATCCCAAAACTCCAAGATCCACAGCAACATGAGCGGCTTTTGA 1479
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1346 GATCCCAAAACTCCAAGATCCACAACAACATGAGCGGCTTTTGA 1389
Score = 272 bits (147), Expect = 5e-72
Identities = 163/171 (95%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 94 ATGAAGCTTGACGTGAATGTGTTGAGATATTTATCCAAAGATGATTTTCGAGTTCTCACT 153
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCTTGACGTGAATGTGTTAAGATATCTATCCAAAGATGATTTTCGAGTTCTCACT 60
Query 154 GCTGTCGAGATGGGAATGCGAAACCATGAGATTGTTCCTTCTGAGCTTGTGGAGCGCATT 213
|| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 GCCGTTGAGATGGGAATGCGAAACCATGAGATTGTTCCTTCTGAGCTCGTTGAGCGCATT 120
Query 214 GCTTGTCTAAAACATGGAGGCACCTACAAGGTCCTGAAGAACTTGCTCAAG 264
|||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GCTTCTCTAAAACATGGAGGCACATACAAGGTCCTGAAGAACTTGCTCAAG 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5