BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51280.1
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485479 jgi|Araly1|485479|fgenesh2_kg.5__1471__AT3G51280.1 2409 0.0
> Ahg485479 jgi|Araly1|485479|fgenesh2_kg.5__1471__AT3G51280.1
Length=1560
Score = 2409 bits (1304), Expect = 0.0
Identities = 1482/1566 (95%), Gaps = 20/1566 (1%)
Strand=Plus/Plus
Query 1 TTAAAATCCTAACCTTGTTCTCACATTAATCCTCCGCCGAGATTCCTTTTGTCTTCTTCT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAAAATCCTAACCTTGTTCCCACATTAATCCTCCGCCGAGATTCCTTTTGTCTTCTTCT 60
Query 61 TCTTCATCTTCTCCATTTCAATTACAAAGATGATGAGAGATGTTTTCAGGCCGACTAAAT 120
||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||
Sbjct 61 TCTTCTTCTTCTCTATTTCAATTCCAAAGATGATGAGAGATGTATTCAGGCCGACCAAAT 120
Query 121 CAGCCCCTTGTTCTCCTGCAAAGCCACTTGGTATCTCTCGCACTCAATCTGAATCATTTC 180
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CAGCCCCGTGTTCTCCTGCAAAGCCACTTGGTATCTCTCGGACTCAATCTGAATCATTTC 180
Query 181 ATGCTATTCACAAAGTTCCTGTCGGAGACAGTCCTTATGTCAGAGCAAAGAATGTTCAGT 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGCTATCCACAAAGTTCCTGTCGGAGACAGTCCTTATGTCAGAGCAAAGAATGTTCAGT 240
Query 241 TAGTGGAGAAGGATCCAGAGAGAGCAATTCCTCTGTTTTGGAAGGCTATTAATGCTGGAG 300
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 TGGTGGAGAAGGATCCAGAGAGAGCAATTCCTCTGTTTTGGAAGGCCATTAATGCTGGAG 300
Query 301 ATAGAGTGGACAGTGCTTTGAAAGACATGGCTATTGTGATGAAGCAACAAAACCGCGCTG 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 ATAGAGTGGACAGTGCTTTGAAAGACATGGCCATTGTGATGAAGCAACAAAACCGCGCTG 360
Query 361 AAGAAGCCATTGAAGCTATTAAATCACTCAGAGTTAGATGTTCAGATCAAGCTCAGGAAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 AAGAAGCCATTGAAGCTATTAAATCACTCAGAGTTAGATGTTCAGATCAAGCCCAGGAAT 420
Query 421 CTCTCGACAATATCCTCTTAGATCTCTACAAGAGATGTGGGAGATTAGATGACCAGATTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCTCGACAATATCCTCTTAGATCTCTACAAGAGATGTGGGAGATTAGATGACCAGATTG 480
Query 481 GACTTTTGAAACATAAGCTCTTCTTGATACAGAAAGGACTCG-CTTTCAATGGTAAACGA 539
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 481 GACTTCTGAAACATAAGCTCTTCTTGATACAGAAAGGACTCGCCTTT-AATGGTAAACGA 539
Query 540 ACCAAAACAGCTAGATCTCAAGGCAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCTACT 599
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 ACCAAAACGGCTAGATCTCAAGGCAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACT 599
Query 600 CGGTTACTGGGAAACTTGGGATGGGCTCTGATGCAACGAGACAACTTTGTGGAAGCTGAA 659
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 600 CGGTTACTGGGAAACTTGGGATGGGCTCTGATGCAAAGAGACAATTTTGTGGAAGCTGAA 659
Query 660 GATGCATACAGAAGAGCTTTATCAATAGCACCAGACAACAACAAAATGTGTAACCTTGGT 719
||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 660 GATGCGTACAGGAGAGCTTTATCTATAGCACCGGACAACAACAAAATGTGTAACCTTGGT 719
Query 720 ATCTGCCTTATGAAGCAAGGAAGGATCGATGAGGCCAAAGAGACTTTACGACGTGTGAAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATCTGCCTTATGAAGCAAGGAAGGATCGATGAGGCCAAAGAGACTTTACGACGTGTGAAA 779
Query 780 CCCGCGGTTGTTGATGGCCCTAGAGGCGTGGATTCACATCTAAAAGCTTACGAGAGAGCG 839
|| |||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 780 CCAGCGGTTGTTGATGGTCCTAGAGGTGTGGATTCGCATCTTAAAGCTTACGAGAGAGCG 839
Query 840 CAACAGATGCTGAATGATCTTGGATCTGAGATGATGAGAAGAGGAGGAGATGATAAGGTT 899
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 CAACAGATGCTGAATGATCTTGGATCTGAGATGATGAGAAGAGGAGGGGATGATAAGGTT 899
Query 900 GAACAAAGAAGGCTCTTTGATGCAATCTTTGGATCTTCCTCTATATGGCAACCTCAGCCT 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 GAACAAAGAAGGCTCTTTGATGCAATCTTTGGATCTTCCTCTATATGGCAGCCTCAGCCT 959
Query 960 TGTAGTGAGCAGA-CTGTGAAGGCTAAACCAAAGCCTGGTTTAAGCAATGGTGATGGATA 1018
||||||||||||| | |||||| | ||| | ||||||||||| ||||||||||||||||
Sbjct 960 TGTAGTGAGCAGAAC-GTGAAGCCCAAATCTAAGCCTGGTTTGAGCAATGGTGATGGATT 1018
Query 1019 CGGTGATGAGAACGTGAAGATGAGTGTGAATCCA---GTAGTAGTAAACCCATTAAGGGT 1075
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1019 CGGTGATGAGAACGTGCAGATGAGTGTGAATCCACCAGTAGTAGTAAACCCATTAAGAGT 1078
Query 1076 TGATGCAAAACCGTTCTTCTCTTCGAAGTTGGTCATCAGTAACAACGAGAAGCTGAAGAG 1135
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 TGATGCTAAACCGTTCTTCTCTTCGAAGTTGATCATCAGTAACAACGAGAAGCTGAAGAG 1138
Query 1136 AACGAGATCGTCGAGCCAAGGGATGGGGATGTTGAGTGGTATTGGTGGTGAT---CATGA 1192
||||||||| |||||||||| ||||||||| ||||||||| |||||||||| |||||
Sbjct 1139 AACGAGATCATCGAGCCAAGAGATGGGGATATTGAGTGGTGGTGGTGGTGATGATCATGA 1198
Query 1193 GGGAGAGACAAACACAAGCACGAGAAGGAGATTGTCAATGGAGAAGAAAGCAACGGAGTG 1252
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||
Sbjct 1199 GGGAGAGACAAACACAAGCACAAGAAGGAGATTGTCGATGGAGAAGAAAGCAACAGATTG 1258
Query 1253 TGGATTACCAGACAATAAAGACTTTGAAGATGCGATCATGGCTGCTGTTTTAGGAACAGA 1312
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1259 TGGATTACCAGACAACAAAGACTTTGAAGATGCGATCTTGGCTGCTGTTTTGGGAACAGA 1318
Query 1313 AACCAAAGTGGACAAGAAGAGGCTCAAGGTGTTCCAGGATATCACTTTGTGTCTCAATCA 1372
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1319 AACCAAAGTGGACAAGAAGAGGCTCAAGGTGTTTCAGGATATCACTTTGTGTATCAATCA 1378
Query 1373 GAGTCTCTAACCACTCTTA-TCATTTTATCATTCTAATT-TATAATT-TAGTCAAGGAAT 1429
|| |||||||||||||||| | ||||| | || | |||| | ||| | |||| ||||||
Sbjct 1379 GAATCTCTAACCACTCTTACTTATTTTTT-AT-CAAATTCT-TAAGTCTAGTGAAGGAAG 1435
Query 1430 CAAAAAAGGAGATGAGCTTAATTCTTCTTGGTAATTTTATTAATGTTTTTGTCAGCTTTA 1489
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1436 CAAAAAGGGAGATGAGCTTAATTCTTCTTGGTAATTT-ATTAATGTTTTTGTCAGCTTAA 1494
Query 1490 AGTTGCTGCCAttttttt---CACAATTATTGTCTTCATTGACCAGTAATAAAAGCTGAA 1546
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||
Sbjct 1495 AGTTGCTGCCATTTTTTTTTTCACAATTATTGTCTTAATTGACCAGTAATAAAAGTTGAA 1554
Query 1547 GTTATT 1552
||||||
Sbjct 1555 GTTATT 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58125713870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5