BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51290.1 Length=2037 Score E Sequences producing significant alignments: (Bits) Value Ahg485480 jgi|Araly1|485480|fgenesh2_kg.5__1472__AT3G51290.1 1967 0.0 > Ahg485480 jgi|Araly1|485480|fgenesh2_kg.5__1472__AT3G51290.1 Length=1825 Score = 1967 bits (1065), Expect = 0.0 Identities = 1215/1285 (95%), Gaps = 20/1285 (2%) Strand=Plus/Plus Query 1 ATGGGTTGTTGTCAGTCAAGAATAGATAGCAAAGAGATAGTGTCTCGTTGTAAAGCAAGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGTTGTTGTCAGTCAAGAATAGATAGCAAAGAGATAGTGTCTCGTTGTAAAGCAAGG 60 Query 61 AAGAGATACTTGAAACATCTTGTTAAAGCTAGACAAACTCTCTCTGTTTCTCACGCGCTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGAGATACTTGAAACATCTTGTTAAAGCTAGACAAACTCTCTCTGTTTCTCACGCGCTT 120 Query 121 TATCTCCGTTCTCTACGCGCCGTTGGCTCTTCCCTTGTTCACttctcttccaaagagact 180 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 121 TATCTCCGTTCTCTACGCGCCGTCGGCTCTTCCCTTGTTCACTTCTCTTCCAAAGAAACT 180 Query 181 cctcttcacctccaccacaaccctccgtctccttctcctcctcctccaccgccgccgcgc 240 |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 181 CCTCTTCACCTCCACCACAATCCTCCTTCTCCTTCTCCTCCTCCTCCTCCGCCGCCGCGT 240 Query 241 cctcctcctcctcctcTAAGCCCTGGCTCTGAAACCACCACATGGaccaccaccactact 300 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 CCTCCTCCTCCGCCTCTAAGCCCTGGCTCTGAAACCACCACATGGACCACCACCACCACT 300 Query 301 tcctctgttcttcctcctcctccgccgccaccacctcctcctcctccgcctTCTTCTACA 360 ||||||| |||||| |||||||| || || |||||||| ||||||||||||||||||||| Sbjct 301 TCCTCTGCTCTTCCGCCTCCTCCTCCTCCGCCACCTCCACCTCCTCCGCCTTCTTCTACA 360 Query 361 TGGGACTTCTGGGATCCGTTTATACCGCCGCCTCCTTCTTCCTCTGAGGAAGAATGGGAG 420 |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 361 TGGGACTTTTGGGATCCGTTTATACCGCCGCCTCCTTCTTCCTCCGAGGAAGAGTGGGAG 420 Query 421 GAAGAGACAACCACCGCGACAAGAACCGCAACAGGAAC------TGGCTCTGATGCTGCT 474 || || ||||||||||| |||||||||||||||||||| ||||||||| |||||| Sbjct 421 GAGGAAACAACCACCGCAACAAGAACCGCAACAGGAACCGGAACTGGCTCTGACGCTGCT 480 Query 475 GTGACGACGGCTCCGACGACAGCTACTCCTCAAGCTTCGTCTGTTGTGAGTGGATTCTCT 534 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 481 GTGACGACGGCTCCGACGACAGCTACTCCTCAAGCTTCGTCTGTAGTGAGTGGATTCTCT 540 Query 535 AAAGATACAATGACGACGACGACGACTGGAAGTGAGCTAGCAGTTGTGGTGTCGAGGAAT 594 |||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||| Sbjct 541 AAAGATACAATGACGACGACTACGACGGGAAGTGAGTTAGCAGTTGTGGTGTCAAGGAAT 600 Query 595 GGTAAAGATCTAATGGAGATTATTAAAGAAGTCGATGAATATTTCCTTAAAGCTGCAGAT 654 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GGTAAAGATCTTATGGAGATTATTAAAGAAGTCGATGAATATTTCCTTAAAGCTGCAGAT 660 Query 655 TCTGGTGCACCTCTCTCTTCTCTCCTTGAAATCTCAACCTCTATCACTGACTTTTCT--G 712 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | Sbjct 661 TCTGGTGCACCTCTCTCTTCTCTTCTTGAAATCTCAACCTCTATCACTGACTTTACTTTG 720 Query 713 -GTCAT-TCCAAATCAGGGAAAATGTACAGTAGTAGTAACTACGAATGTAATCTGAATCC 770 ||| | || |||||||||||||| ||||| | ||||||||||||||||||||| Sbjct 721 TGTC-TGTCT---TCAGGGAAAATGTA---TAGTA--A-CTACGAATGTAATCTGAATCC 770 Query 771 GACGTCGTTTTGGACAAGGGGATTTGCTCCTTCTAAGTTGAGTGAATACAGAAACGCAGG 830 |||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||| Sbjct 771 GACGTCGTTTTGGACAAGAGCATTTGCTCCTCCTAAGTTGAATGAATACAGAAACGCAGG 830 Query 831 AGGAGTAATTGGAGGAAATTGCATTGTTGGTAGCCATTCATCTACAGTGGACAGACTCTA 890 |||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct 831 AGGAGTAACTGGAGGAAATTGCATTGTTGGTAGCCATTCCTCCACAGTGGATAGACTCTA 890 Query 891 TGCTTGGGAGAAGAAACTTTATCAAGAGGTCAAGTATGCAGAGAGCATAAAGATGGATCA 950 ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| || Sbjct 891 TGCTTGGGAGAAGAAGCTTTATCAGGAGGTCAAGAATGCAGAGAGCATAAAGATGGAGCA 950 Query 951 TGAGAAGAAAGTGGAGCAAGTGAGGAGGCTTGAGATGAAGAGAGCTGAGTATGTCAAGAC 1010 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 951 TGAGAAGAAAGTGGAGCAAGTGAGGAGGCTTGAGATGAAGAGAGCTGAGTATGTCAAGAC 1010 Query 1011 TGAGAAGGCTAAGAAAGACGTCGAGAAGTTAGAATCTCAGCTCTCAGTATCTTCACAAGC 1070 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1011 TGAGAAGGCTAAGAAAGACGTCGAGAAGTTAGAATCTCAGCTCTCAGTATCTTCACAAGC 1070 Query 1071 CATCCAAAGCGCCTCTAACGAGATCATCAAGCTCAGAGAGACCGAGCTTTACCCTCAGCT 1130 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1071 CATCCAGAGCGCTTCTAACGAGATCATCAAGCTCAGAGAGACCGAGCTTTATCCTCAGCT 1130 Query 1131 TGTCGAGCTTGTTAAAGGGAGTATGTACGAGAGCCACCAGGTTCAAACCCATATTGTGCA 1190 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1131 CGTAGAGCTTGTTAAAGGGAGTATGTACGAGAGCCACCAGGTTCAAACCCATATTGTTCA 1190 Query 1191 GCAGCTTAAGTACCTTAACACCATCCCCTCCACTGAACCAACATCTGAGCTTCACCGACA 1250 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1191 GCAGCTTAAGTACCTTAACACCATCCCCTCCACTGAACCCACATCCGAGCTTCACCGACA 1250 Query 1251 ATCAACTCTTCAGCTTGAGCTCGAG 1275 ||||||||||||||||||||||||| Sbjct 1251 ATCAACTCTTCAGCTTGAGCTCGAG 1275 Score = 881 bits (477), Expect = 0.0 Identities = 528/553 (95%), Gaps = 2/553 (0%) Strand=Plus/Plus Query 1370 AGTTCAGCAAGAATCCACTTGTTAGGAGTAGCTACGAGTCAAAGATCTACAGCTTCTGCG 1429 |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1274 AGTTCAGCAAGAATCCGCTTGTTAGGAGTAGCTACGAGTCAAAAATCTACAGTTTCTGCG 1333 Query 1430 AGGAATGGCATTTAGCTATTGA-CAGGATCCCTGATAAAGTAGCATCTGAAGGGATCAAA 1488 ||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1334 AGGAATGGCATTTGGCTATTGATC-GGATCCCTGATAAAGTAGCATCTGAAGGGATCAAA 1392 Query 1489 AGCTTTCTGACAGCAGTCCATGGAATTGTGGCTCAACAAGCCGACGAGCATAAGCAAAAG 1548 |||||| | || |||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct 1393 AGCTTTTTAACCGCAGTCCATGGAATTGTGGCTCAACAGGCGGACGAGCATAAGCAGAAG 1452 Query 1549 AAGAGAACAGAATCCATGTTAAAAGATTTCGAGAAGAAATCGGCTTCGCTGAGAGCGCTT 1608 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 1453 AAGAGAACAGAATCCATGTTAAAAGATTTTGAGAAGAAATCGGCTGCGCTGAGAGCGCTT 1512 Query 1609 GAGAGCAAGTATAGTCCATACTCGGTACCTGAGAGTAGGAAAAAGAACCCGGTGATagag 1668 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1513 GAGAGCAAGTATAGTCCATACTCGGTGCCTGAGAGCAGGAAAAAGAACCCGGTGATAGAG 1572 Query 1669 aagagagtaaaggttgagatgctaaaaggaaaagcagaagaagagaaaagtaagCATGAG 1728 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1573 AAGAGAGTAAAGGTTGAGATGCTGAAAGGAAAGGCAGAAGAAGAGAAAAGTAAGCATGAG 1632 Query 1729 AAGTCAGTGAGTGTGACTAGAGCCATGACTCTAAATAACTTGCAGATGGGTTTCCCTCAT 1788 ||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1633 AAGTCAGTGAGCGTGAGTAGAGCCATGACGCTAAATAACTTGCAGATGGGATTCCCTCAT 1692 Query 1789 GTCTTTCAGGCAATGGTTGGGTTTTCAAGTGTGTGTATGCAAGCCTTTGAGTCTGTGTAC 1848 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1693 GTGTTTCAGGCAATGGTTGGGTTTTCAAGTGTGTGTATGCAAGCCTTTGAGTCTGTGTAC 1752 Query 1849 AACCAAGCTAAGAGCATCGGTGAGGATCAAGAGGAGGTTAAGAGGTTGCTTCCTTAAAGA 1908 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1753 AACCAAGCTAAGAGCATCGGTGAGGATCAAGAGGAGGTCAAGAGGTTGCTTCCTTAAGGA 1812 Query 1909 GAGAAAGACAAAT 1921 ||||||||||||| Sbjct 1813 GAGAAAGACAAAT 1825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76599482695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5