BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51300.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937990 jgi|Araly1|937990|scaffold_502181.1 1269 0.0
Ahg926972 jgi|Araly1|926972|scaffold_202533.1 431 5e-120
Ahg491155 jgi|Araly1|491155|fgenesh2_kg.7__588__AT4G35020.1 416 2e-115
> Ahg937990 jgi|Araly1|937990|scaffold_502181.1
Length=745
Score = 1269 bits (687), Expect = 0.0
Identities = 726/745 (97%), Gaps = 1/745 (0%)
Strand=Plus/Plus
Query 291 TTAATAAACTTTGAGGGGAAATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTG 350
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TTAATAATCTTTGAGGGGAAATGAGCGCTTCGCGGTTCGTAAAGTGCGTGACGGTTGGTG 60
Query 351 ATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGG 410
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 ATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACGAGCAACACTTTCCCTACGG 120
Query 411 ATTATGTGCCTACCGTTTTCGATAATTTCAGTGCCAATGTTGTGGTTAATGGAAGCACTG 470
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 121 ATTATGTGCCTACCGTTTTCGATAATTTCAGTGCAAATGTGGTTGTTAATGGAAGCACTG 180
Query 471 TGAATCTTGGATTGTGGGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGA 530
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TGAATCTTGGATTGTGGGATACTGCAGGGCAAGAGGATTACAACAGATTAAGACCACTGA 240
Query 531 GTTACCGTGGAGCAGATGTTTTCATTTTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTACCGTGGAGCAGATGTTTTCATTTTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATG 300
Query 591 AAAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCG 650
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 AAAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCACCTGGTGTCCCCATCA 360
Query 651 TCCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTG 420
Query 711 GTGCTGTTCCGATTACTACTGCTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA 770
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 GCGCTGTCCCGATTACTACTGCTCAAGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA 480
Query 771 CTTACATCGAATGCAGTTCCAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCA 830
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTACATCGAATGCAGTTCTAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCA 540
Query 831 TCCGAGTGGTGTTGCAACCGCCAAAGCAGAAGAAGAAGAAGAGCAAAGCGCAGAAGGCAT 890
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCGAGTGGTGTTGCAACCACCGAAGCAGAAGAAGAAGAAGAGCAAAGCGCAGAAGGCAT 600
Query 891 GCTCCATTCTATGATGATTGGAAATCTCTGTTTTTATGTATTTGGTTTTGGTATATTAAT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTCCATTCTATGATGATTGGAAATCTCTGTTTTTATGTATTTGGTTTTGGTATATTAAT 660
Query 951 CTTCTAACAATGAATGAATCAATGTGTTAATGGACAGACACCCAAGTTTGACTGGTCCTT 1010
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 CTTCTAACAATGAATGAATCAATGTGTTAATGGACAGACACCCAAGTTTGATTGGTCCTT 720
Query 1011 TTT-GTTCTTAATATTAATGGAGTT 1034
||| |||||||||||||||||||||
Sbjct 721 TTTTGTTCTTAATATTAATGGAGTT 745
> Ahg926972 jgi|Araly1|926972|scaffold_202533.1
Length=632
Score = 431 bits (233), Expect = 5e-120
Identities = 471/585 (81%), Gaps = 20/585 (3%)
Strand=Plus/Plus
Query 296 AAACTTTGAGG-GGAAATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGG 354
||| |||| || ||| ||||| ||||||||||| ||||||| || || || || |||||
Sbjct 7 AAA-TTTGCGGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTGTCACCGTCGGCGATGG 65
Query 355 AGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGGATTA 414
|| ||||||||||| ||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 66 TGCCGTCGGAAAAACCTGTATGCTGATTTCTTACACAAGCAACACTTTCCCTACGGACTA 125
Query 415 TGTGCCTACCGTTTTCGATAATTTCAGTGCCAATGTTGTGGTTA-ATGG-AAGCACTGTG 472
||| || || |||||||| || |||||||| ||||| || || | |||| || ||| |||
Sbjct 126 TGTTCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGT-AGATGGGAA-CACGGTG 183
Query 473 AATCTTGGATTGTGGGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGAGT 532
||||||||||||||||| || || || ||||| || || || || |||||||| |||||
Sbjct 184 AATCTTGGATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGTTAAGACCGTTGAGT 243
Query 533 TACCGTGGAGCAGATGTTTTCATT-TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGA 591
|||||||| || ||||| |||||| ||| | ||||| ||||| || || || || |||||
Sbjct 244 TACCGTGGTGCCGATGTCTTCATTCTTG-CATTCTCCCTTATTAGCAAGGCTAGCTATGA 302
Query 592 AAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCGT 651
|| || |||| |||||||| || ||| | | ||||| || |||||||| || || |
Sbjct 303 GAATGTAGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCCCCTGGTGTTCCTATAAT 362
Query 652 CCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTGG 711
||||||||||||||| || |||||||||||||| || |||||||| || |||||||||||
Sbjct 363 CCTTGTTGGAACAAAACTCGATCTTCGAGATGACAAGCAGTTCTTCATAGACCATCCTGG 422
Query 712 TGCTGTTCCGATTACTACTG-CTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA 770
||| || ||||||||||| | ||||||||||| | | ||| | |||||| | || |
Sbjct 423 TGCAGTGCCGATTACTACAAAC-CAGGGAGAGGAATTAAAGAAACTGATAGGATCTCCAA 481
Query 771 -CTTACATCGAATGCAGTTCCAAA-ACTCAAG-AGAATGTGAAGGCGGTGTTTGACGCAG 827
|| |||| ||||| ||||| ||| || || | |||||||||| || || ||||||||||
Sbjct 482 TCT-ACATTGAATGTAGTTC-AAAGACGCA-GCAGAATGTGAAAGCAGTCTTTGACGCAG 538
Query 828 CCATCCGAGTGGTG-TTGCAACCGCC-AAAGCAGAAGAAGAAGAA 870
|||| ||||||| || || || || ||| ||||||||||||||
Sbjct 539 CCATAAAAGTGGTGCTT-CAGCCACCGAAA-CAGAAGAAGAAGAA 581
> Ahg491155 jgi|Araly1|491155|fgenesh2_kg.7__588__AT4G35020.1
Length=1012
Score = 416 bits (225), Expect = 2e-115
Identities = 470/587 (80%), Gaps = 21/587 (4%)
Strand=Plus/Plus
Query 311 ATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAACT 370
||||| ||||| ||||| | ||||| || || || || || || ||||| ||||| |||
Sbjct 203 ATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGGAAAGACT 262
Query 371 TGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGGATTATGTGCCTACCGTTTTC 430
|||||| | || || ||||| |||||||||||||| |||||||||||||| || || |||
Sbjct 263 TGTTTGCTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGTTC 322
Query 431 GATAATTTCAGTGCCAATGTTG-TGGTTA-AT-GGAAGCACTGTGAATCTT-GGATTGTG 486
||||||||||||||||||| || | | || || |||| |||| | || ||| ||||||||
Sbjct 323 GATAATTTCAGTGCCAATG-TGATTG-TAGATGGGAA-CACTATCAA-CTTGGGATTGTG 378
Query 487 GGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGAGTTACCGTGGAGCAGA 546
||| ||||||||||||||||| ||||||||| ||||||| |||| || || || |||||
Sbjct 379 GGATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGA 438
Query 547 TGTTTTCATT--TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGAAAACGTCTCCAAA 604
||| ||| || || || |||||||| | || ||||| || |||||||| || || |||
Sbjct 439 TGTCTTC-TTACTT-GCATTCTCTCTCGTTAGCAAAGCTAGCTATGAAAATGTTTCTAAA 496
Query 605 AAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCGTCCTTGTTGGAACA 664
|||||| | || || ||| |||||| || |||||||| |||||| |||| |||||||||
Sbjct 497 AAGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACA 556
Query 665 AAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTGGTGCTGTTCCGAT- 723
||||||||||||||||||||||| || |||||| ||| || ||||||||||| || ||
Sbjct 557 AAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTATC 616
Query 724 TACTACTGCTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTACTTACATCGAATG 783
| |||| |||||||| || || || | ||||| || || |||||| |||| || |||||
Sbjct 617 T-CTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTGGGGCACCTGCTTATATTGAATG 675
Query 784 CAGTTCCAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCATCCGAG-TGGTGT 842
|||| | ||||||||| ||||||| || || |||||||| || || ||| || | || |
Sbjct 676 CAGTGCAAAAACTCAACAGAATGTAAAAGCAGTGTTTGATGCGGCTATCA-AGGTCGT-T 733
Query 843 -TGCAACCGCCAAAG--CA-GAAGAAGAAGAAGAGCAAAGCGCAGAA 885
| || || ||||| || ||||||||||||||| ||| | |||||
Sbjct 734 CTCCAGCCACCAAAAAACAAGAAGAAGAAGAAGAGAAAATCTCAGAA 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5