BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51300.1 Length=1061 Score E Sequences producing significant alignments: (Bits) Value Ahg937990 jgi|Araly1|937990|scaffold_502181.1 1269 0.0 Ahg926972 jgi|Araly1|926972|scaffold_202533.1 431 5e-120 Ahg491155 jgi|Araly1|491155|fgenesh2_kg.7__588__AT4G35020.1 416 2e-115 > Ahg937990 jgi|Araly1|937990|scaffold_502181.1 Length=745 Score = 1269 bits (687), Expect = 0.0 Identities = 726/745 (97%), Gaps = 1/745 (0%) Strand=Plus/Plus Query 291 TTAATAAACTTTGAGGGGAAATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTG 350 ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 TTAATAATCTTTGAGGGGAAATGAGCGCTTCGCGGTTCGTAAAGTGCGTGACGGTTGGTG 60 Query 351 ATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGG 410 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 61 ATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACGAGCAACACTTTCCCTACGG 120 Query 411 ATTATGTGCCTACCGTTTTCGATAATTTCAGTGCCAATGTTGTGGTTAATGGAAGCACTG 470 |||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| Sbjct 121 ATTATGTGCCTACCGTTTTCGATAATTTCAGTGCAAATGTGGTTGTTAATGGAAGCACTG 180 Query 471 TGAATCTTGGATTGTGGGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGA 530 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 181 TGAATCTTGGATTGTGGGATACTGCAGGGCAAGAGGATTACAACAGATTAAGACCACTGA 240 Query 531 GTTACCGTGGAGCAGATGTTTTCATTTTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATG 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTTACCGTGGAGCAGATGTTTTCATTTTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATG 300 Query 591 AAAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCG 650 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 301 AAAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCACCTGGTGTCCCCATCA 360 Query 651 TCCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTG 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTG 420 Query 711 GTGCTGTTCCGATTACTACTGCTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA 770 | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 421 GCGCTGTCCCGATTACTACTGCTCAAGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA 480 Query 771 CTTACATCGAATGCAGTTCCAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCA 830 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTTACATCGAATGCAGTTCTAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCA 540 Query 831 TCCGAGTGGTGTTGCAACCGCCAAAGCAGAAGAAGAAGAAGAGCAAAGCGCAGAAGGCAT 890 | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 541 TTCGAGTGGTGTTGCAACCACCGAAGCAGAAGAAGAAGAAGAGCAAAGCGCAGAAGGCAT 600 Query 891 GCTCCATTCTATGATGATTGGAAATCTCTGTTTTTATGTATTTGGTTTTGGTATATTAAT 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GCTCCATTCTATGATGATTGGAAATCTCTGTTTTTATGTATTTGGTTTTGGTATATTAAT 660 Query 951 CTTCTAACAATGAATGAATCAATGTGTTAATGGACAGACACCCAAGTTTGACTGGTCCTT 1010 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 661 CTTCTAACAATGAATGAATCAATGTGTTAATGGACAGACACCCAAGTTTGATTGGTCCTT 720 Query 1011 TTT-GTTCTTAATATTAATGGAGTT 1034 ||| ||||||||||||||||||||| Sbjct 721 TTTTGTTCTTAATATTAATGGAGTT 745 > Ahg926972 jgi|Araly1|926972|scaffold_202533.1 Length=632 Score = 431 bits (233), Expect = 5e-120 Identities = 471/585 (81%), Gaps = 20/585 (3%) Strand=Plus/Plus Query 296 AAACTTTGAGG-GGAAATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGG 354 ||| |||| || ||| ||||| ||||||||||| ||||||| || || || || ||||| Sbjct 7 AAA-TTTGCGGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTGTCACCGTCGGCGATGG 65 Query 355 AGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGGATTA 414 || ||||||||||| ||| || |||||||||||||||||||||||||||||||||| || Sbjct 66 TGCCGTCGGAAAAACCTGTATGCTGATTTCTTACACAAGCAACACTTTCCCTACGGACTA 125 Query 415 TGTGCCTACCGTTTTCGATAATTTCAGTGCCAATGTTGTGGTTA-ATGG-AAGCACTGTG 472 ||| || || |||||||| || |||||||| ||||| || || | |||| || ||| ||| Sbjct 126 TGTTCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGT-AGATGGGAA-CACGGTG 183 Query 473 AATCTTGGATTGTGGGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGAGT 532 ||||||||||||||||| || || || ||||| || || || || |||||||| ||||| Sbjct 184 AATCTTGGATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGTTAAGACCGTTGAGT 243 Query 533 TACCGTGGAGCAGATGTTTTCATT-TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGA 591 |||||||| || ||||| |||||| ||| | ||||| ||||| || || || || ||||| Sbjct 244 TACCGTGGTGCCGATGTCTTCATTCTTG-CATTCTCCCTTATTAGCAAGGCTAGCTATGA 302 Query 592 AAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCGT 651 || || |||| |||||||| || ||| | | ||||| || |||||||| || || | Sbjct 303 GAATGTAGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCCCCTGGTGTTCCTATAAT 362 Query 652 CCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTGG 711 ||||||||||||||| || |||||||||||||| || |||||||| || ||||||||||| Sbjct 363 CCTTGTTGGAACAAAACTCGATCTTCGAGATGACAAGCAGTTCTTCATAGACCATCCTGG 422 Query 712 TGCTGTTCCGATTACTACTG-CTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA 770 ||| || ||||||||||| | ||||||||||| | | ||| | |||||| | || | Sbjct 423 TGCAGTGCCGATTACTACAAAC-CAGGGAGAGGAATTAAAGAAACTGATAGGATCTCCAA 481 Query 771 -CTTACATCGAATGCAGTTCCAAA-ACTCAAG-AGAATGTGAAGGCGGTGTTTGACGCAG 827 || |||| ||||| ||||| ||| || || | |||||||||| || || |||||||||| Sbjct 482 TCT-ACATTGAATGTAGTTC-AAAGACGCA-GCAGAATGTGAAAGCAGTCTTTGACGCAG 538 Query 828 CCATCCGAGTGGTG-TTGCAACCGCC-AAAGCAGAAGAAGAAGAA 870 |||| ||||||| || || || || ||| |||||||||||||| Sbjct 539 CCATAAAAGTGGTGCTT-CAGCCACCGAAA-CAGAAGAAGAAGAA 581 > Ahg491155 jgi|Araly1|491155|fgenesh2_kg.7__588__AT4G35020.1 Length=1012 Score = 416 bits (225), Expect = 2e-115 Identities = 470/587 (80%), Gaps = 21/587 (4%) Strand=Plus/Plus Query 311 ATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAACT 370 ||||| ||||| ||||| | ||||| || || || || || || ||||| ||||| ||| Sbjct 203 ATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGGAAAGACT 262 Query 371 TGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGGATTATGTGCCTACCGTTTTC 430 |||||| | || || ||||| |||||||||||||| |||||||||||||| || || ||| Sbjct 263 TGTTTGCTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGTTC 322 Query 431 GATAATTTCAGTGCCAATGTTG-TGGTTA-AT-GGAAGCACTGTGAATCTT-GGATTGTG 486 ||||||||||||||||||| || | | || || |||| |||| | || ||| |||||||| Sbjct 323 GATAATTTCAGTGCCAATG-TGATTG-TAGATGGGAA-CACTATCAA-CTTGGGATTGTG 378 Query 487 GGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGAGTTACCGTGGAGCAGA 546 ||| ||||||||||||||||| ||||||||| ||||||| |||| || || || ||||| Sbjct 379 GGATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGA 438 Query 547 TGTTTTCATT--TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGAAAACGTCTCCAAA 604 ||| ||| || || || |||||||| | || ||||| || |||||||| || || ||| Sbjct 439 TGTCTTC-TTACTT-GCATTCTCTCTCGTTAGCAAAGCTAGCTATGAAAATGTTTCTAAA 496 Query 605 AAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCGTCCTTGTTGGAACA 664 |||||| | || || ||| |||||| || |||||||| |||||| |||| ||||||||| Sbjct 497 AAGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACA 556 Query 665 AAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTGGTGCTGTTCCGAT- 723 ||||||||||||||||||||||| || |||||| ||| || ||||||||||| || || Sbjct 557 AAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTATC 616 Query 724 TACTACTGCTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTACTTACATCGAATG 783 | |||| |||||||| || || || | ||||| || || |||||| |||| || ||||| Sbjct 617 T-CTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTGGGGCACCTGCTTATATTGAATG 675 Query 784 CAGTTCCAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCATCCGAG-TGGTGT 842 |||| | ||||||||| ||||||| || || |||||||| || || ||| || | || | Sbjct 676 CAGTGCAAAAACTCAACAGAATGTAAAAGCAGTGTTTGATGCGGCTATCA-AGGTCGT-T 733 Query 843 -TGCAACCGCCAAAG--CA-GAAGAAGAAGAAGAGCAAAGCGCAGAA 885 | || || ||||| || ||||||||||||||| ||| | ||||| Sbjct 734 CTCCAGCCACCAAAAAACAAGAAGAAGAAGAAGAGAAAATCTCAGAA 780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39495342012 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5